View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8290_low_3 (Length: 559)
Name: NF8290_low_3
Description: NF8290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8290_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 26276046 - 26276596
Alignment:
| Q |
1 |
acagccccttttcgtaagattctcatcagtcggcatcttgttgttagctaatctccagaaaatgaaagacctagagggagggacgaaattgttccaaact |
100 |
Q |
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| T |
26276046 |
acagccccttttcgtaagattctcatcagtcggcatcttgttgttagctaatctccagaaaatgaaagacctagagg-agggacgaaattgttccaaact |
26276144 |
T |
|
| Q |
101 |
aacttacaccacctcaccttaggaccaaagatgcgcaaggtgttataggcgcaattttgctagtaagttttccatcaacggaggccctccaattcagcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26276145 |
aacttacaccacctcaccttaggaccaaagatgcgcaaggtgttataggcgcaattttgctagtaagttttccatcaacagaggccctccaattcagcct |
26276244 |
T |
|
| Q |
201 |
atcatgggaatcatcaatagagagggtaaccgtgagaatttgctttgctaactctttagacttttgtaccagatacatggggatattccaattaccatcc |
300 |
Q |
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| T |
26276245 |
atcatgggaatcatcaatagagagggtaaccgtgagaatttgctttgctaactctttagacttttgtatcagatacatggggatattccaattaccatcc |
26276344 |
T |
|
| Q |
301 |
agaatgtaatctgctaccttcatgttaagggcagggtgcatgtgcagagggatattaagagattccacaatagattgttctaaccatttatctgtccaga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26276345 |
agaatgtaatctgctaccttcatgttaagggcagggtgcatgtgcagagggatattaagagattccacaatagattgttctaaccatttgtctgtccaga |
26276444 |
T |
|
| Q |
401 |
agttgacagtgttcccattacctattgaccatgaggattgctcagcaatcattctgagatggactctcattcccgaccaaactgaagacgctctattgta |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
26276445 |
agttgacagtgttcccattacctattgaccatgaggattgctcagcattcattctgagatggactatcattcccgaccaaaatgaagacgctctattgta |
26276544 |
T |
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| Q |
501 |
ggtgataggctttccattctttaagtaccgggttctacacattgatgtccat |
552 |
Q |
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| T |
26276545 |
ggtgataggctttccattctttaagtaccgggttctacacatttgtgtccat |
26276596 |
T |
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