View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8290_low_4 (Length: 502)
Name: NF8290_low_4
Description: NF8290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8290_low_4 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Complemental strand, 51861677 - 51861199
Alignment:
| Q |
17 |
aaagggaactaactagcttacaagtgtttcatccttagctttagagtctaaaacagcttcgtagcacttgtaaataggatcctcggatgaatcatcttca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51861677 |
aaagggaactaactagcttacaagtgtttcatccttagctttagagtctaaaacagcttcgtagcacttgtaaataggatcctcggatgaatcatcttca |
51861578 |
T |
|
| Q |
117 |
tttgcttgtttttcagaatcataaaaatagtccacaacagtaactgcatcattattttcaccatcagttatatagattgataaaatagaaccataaaagc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51861577 |
tttgcttgtttttcagaatcataaaaatagtccacaacagtaactgcatcattattttcaccatcagttatatagattgatacaatagaaccataaaagc |
51861478 |
T |
|
| Q |
217 |
nnnnnnnnnnnn-----atcattaattattagtaattttcttcatcagttctgtattttaccttctatagagttggctaagccttcaagcttcgatatgg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51861477 |
tttttttttatttttttatcattaattattagtaattttcttcatcagttctgtattttaccttctatagagttggctaagccttcaagctttgatatgg |
51861378 |
T |
|
| Q |
312 |
tggttttatgaaggtcttcacctgaccagtttggaaatacaaatagggtcatcacaagacaaatagcaacaccgatgcatatggtagagacgcggtcttt |
411 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
51861377 |
tggatttatgaaggtcttcacctgaccagtttggaaatacaaatagggtcatcacaagacaaatagcaacgccgatgcatatggtagagacgcgatcttt |
51861278 |
T |
|
| Q |
412 |
tgccaagctcaagatattatctacgcggtaacttgatacaatcatcaaattaaaggtcaagagaaatatcataacacca |
490 |
Q |
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| T |
51861277 |
tgccaagctcaagatattatctacgcggtaacttgatacaatcatcaaattaaaggtcaagagaaatatcataacacca |
51861199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 269 - 490
Target Start/End: Complemental strand, 51851268 - 51851047
Alignment:
| Q |
269 |
ttaccttctatagagttggctaagccttcaagcttcgatatggtggttttatgaaggtcttcacctgaccagtttggaaatacaaatagggtcatcacaa |
368 |
Q |
| |
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||||||||||| || |||||||| ||||||||||| |||||||||| |||||| || ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
51851268 |
ttaccttctatggatttggctaatccttcaagctttgatatggtggatttatggagttcttcccctgaccagtttggaaatacaaataggctcatcacaa |
51851169 |
T |
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| Q |
369 |
gacaaatagcaacaccgatgcatatggtagagacgcggtcttttgccaagctcaagatattatctacgcggtaacttgatacaatcatcaaattaaaggt |
468 |
Q |
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|||||| | |||| || |||||||||||| ||| ||| ||||| | | |||| ||| |||||| |||||||||||||||||||| |||||||||||||| |
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| T |
51851168 |
gacaaagaccaacgcctatgcatatggtatagatgcgatctttcccaatgctccagacattatcaacgcggtaacttgatacaattatcaaattaaaggt |
51851069 |
T |
|
| Q |
469 |
caagagaaatatcataacacca |
490 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
51851068 |
caacagaaatatcataacacca |
51851047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 267 - 490
Target Start/End: Complemental strand, 51821463 - 51821240
Alignment:
| Q |
267 |
ttttaccttctatagagttggctaagccttcaagcttcgatatggtggttttatgaaggtcttcacctgaccagtttggaaatacaaatagggtcatcac |
366 |
Q |
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|||||||||||| ||||||||||||||||||||| || |||||||||| ||||||||||||||| |||||||| || |||||||||||||| |||| || |
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| T |
51821463 |
ttttaccttctacagagttggctaagccttcaagttttgatatggtggatttatgaaggtcttcccctgaccaattcggaaatacaaatagactcataac |
51821364 |
T |
|
| Q |
367 |
aagacaaatagcaacaccgatgcatatggtagagacgcggtcttttgccaagctcaagatattatctacgcggtaacttgatacaatcatcaaattaaag |
466 |
Q |
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| T |
51821363 |
aagacaaagaccaacgccgatgcatatagttgagatgcgatcttttgccatcttcaagacattatcaacacggtaactcgatacaattatcaaattaaag |
51821264 |
T |
|
| Q |
467 |
gtcaagagaaatatcataacacca |
490 |
Q |
| |
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||||||||||||| |||||||||| |
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| T |
51821263 |
gtcaagagaaataccataacacca |
51821240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 51821768 - 51821594
Alignment:
| Q |
33 |
cttacaagtgtttcatccttagctttagagtctaaaacagcttcgtagcacttgtaaataggatcctcggatgaatcatcttcatttgcttgtttttcag |
132 |
Q |
| |
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||||| |||||||||||| |||||||||| |||||||| || || |||||||||||||| |||||||| |||||||||||||||||||||||||||| || |
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| T |
51821768 |
cttaccagtgtttcatccctagctttagaatctaaaacggcctcatagcacttgtaaatgggatcctctgatgaatcatcttcatttgcttgttttttag |
51821669 |
T |
|
| Q |
133 |
aatcataaaaatagtccacaacagtaactgcatcattattttcaccatcagttatatagattgataaaatagaac |
207 |
Q |
| |
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||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| | |||||||| |
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| T |
51821668 |
aatcagaaaaatattccacaacagtagctgcatcattattttcaccatcaattatatagattgagacaatagaac |
51821594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 51851530 - 51851385
Alignment:
| Q |
28 |
actagcttacaagtgtttcatccttagctttagagtctaaaacagcttcgtagcacttgtaaataggatcctcggatgaatcatcttcatttgcttgttt |
127 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
51851530 |
actagcttaccagtgtttcatccttagatttagagtctaaaacggcctcgtagcacttgtaaatgagatcctcagatgaatca---tcatttgcttgttt |
51851434 |
T |
|
| Q |
128 |
ttcagaatcataaaaatagtccacaacagtaactgcatcattattttca |
176 |
Q |
| |
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|||||||||||||||||| |||| |||| |||||||||||| |||||| |
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| T |
51851433 |
ttcagaatcataaaaatattccatgacagaaactgcatcattgttttca |
51851385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 453
Target Start/End: Original strand, 49808560 - 49808733
Alignment:
| Q |
276 |
ctatagagttggctaagccttcaagcttcgatatggtggttttatgaaggtcttcacctgaccagtttggaaatacaaatagggtca-tcacaagacaaa |
374 |
Q |
| |
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||||||| ||||||||||| |||||||| |||||||| | ||||| || ||||| ||| |||||||||||| ||||||| | ||| | ||||||||| |
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| T |
49808560 |
ctatagatttggctaagccatcaagctttgatatggtag-attatggagttcttccccttcccagtttggaaaaacaaataagctcattgccaagacaaa |
49808658 |
T |
|
| Q |
375 |
tagcaacaccgatgcatatggtagagacgcggtcttttgccaagctcaagatattatctacgcggtaacttgatacaat |
453 |
Q |
| |
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||||| |||||||||||| ||| ||| ||| | | | |||||||| |||||| ||||||||| ||||||||| |
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|
| T |
49808659 |
----gacacctatgcatatggtatagatgcgatctctcccgatgctcaagacattatcaacgcggtaaaatgatacaat |
49808733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 51375983 - 51376023
Alignment:
| Q |
78 |
tagcacttgtaaataggatcctcggatgaatcatcttcatt |
118 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||| |
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| T |
51375983 |
tagcacttgtaaacgggatcctcagatgaatcatcttcatt |
51376023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 415 - 490
Target Start/End: Complemental strand, 5233 - 5158
Alignment:
| Q |
415 |
caagctcaagatattatctacgcggtaacttgatacaatcatcaaattaaaggtcaagagaaatatcataacacca |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233 |
caagctcaagatattatctacgcggtaacttgatacaatcatcaaattaaaggtcaagagaaatatcataacacca |
5158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 274 - 357
Target Start/End: Original strand, 42454230 - 42454317
Alignment:
| Q |
274 |
ttctatagagttggctaagccttcaagcttcgatatggtgg----ttttatgaaggtcttcacctgaccagtttggaaatacaaatag |
357 |
Q |
| |
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|||||||||| ||||||||||||||||||| |||||||||| |||||||| || ||| ||| |||||||||||||||| ||||| |
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| T |
42454230 |
ttctatagagatggctaagccttcaagctttgatatggtggatttatttatgaacgttttcccctaaccagtttggaaatactaatag |
42454317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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