View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8290_low_5 (Length: 485)
Name: NF8290_low_5
Description: NF8290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8290_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 5 - 455
Target Start/End: Original strand, 9892737 - 9893188
Alignment:
| Q |
5 |
gtgttaggatcatacaagttgaatgttgcgtgtaatggttgtttacgtatccatgtcaattgaccttgttttggcaaaaagttggtcaagaaattcaaag |
104 |
Q |
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| T |
9892737 |
gtgttaggatcatacaagttgaatgttgcatgtaatggttgtttacgtatccatgtcaattgaccttgttttggcaaaaagttggtcaagaaattcaaag |
9892836 |
T |
|
| Q |
105 |
gtactccttgtttcaaaacataattaggtttttcattcacaatgatgaaatgtaactcttctgaattttcaggcaaatcattttcaacaaagagggaaag |
204 |
Q |
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| T |
9892837 |
gtactccttgtttcaaaacataattaggtttttcattcacaatgatgaaatgtaactcttctgaattttcaggcaaatcattttcaacaaagagggaaag |
9892936 |
T |
|
| Q |
205 |
tactttttctgcaggaggtcgttcgtaagattgaatagagactctactaccaaaagctgaattattgaaagacataacaatcacaagtaataacaagaaa |
304 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9892937 |
tactttttctgcaggaggtcgttcataagattgaatagagactctactaccaaaagttgaattattgaaagacataacaatcacaagtaataacgagaaa |
9893036 |
T |
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| Q |
305 |
gatgtatgaattgaaatagacattttgttgacaagggatttttcacaattg-ttttttctgttttctctaccatttcattctattatatatatgaaattt |
403 |
Q |
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| T |
9893037 |
gatttatgaattgaaatagacattttgttgacaagggatttttgacaattgcttttttctgttttctctaccatttcattctattatatatatgaaattt |
9893136 |
T |
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| Q |
404 |
gggctgtgcttcttttgtttgtgaaaataagactagtcaatattccctaaat |
455 |
Q |
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| T |
9893137 |
gggctgtgcttcttttgtttgtgaaaataagactagtcaatattccctaaat |
9893188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 9212479 - 9212153
Alignment:
| Q |
7 |
gttaggatcatacaagttgaatgttgcgtgtaatggttgtttacgtatccatgtcaattgaccttgttttggcaaaaagttggtcaagaaattcaaaggt |
106 |
Q |
| |
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||||||||||||||||||||||||||| |||| |||||||| ||| | |||||||| | | ||||| |||| | |||||||| |||||| | ||| |
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| T |
9212479 |
gttaggatcatacaagttgaatgttgcatgtagtggttgttgacgcacccatgtcatctcagcttgtcttggtacaaagttggaaaagaaaactacagga |
9212380 |
T |
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| Q |
107 |
actccttgtttcaaaacataattaggtttttcattcacaatgatgaaatgtaactcttctgaattttcaggcaaatcattttcaacaaagagggaaagta |
206 |
Q |
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| T |
9212379 |
gctcctcttttcaaaacgttccttggtttttcattgataatatggaagtataactctcctgaattttctggtaaatcattttcaaccgagagtaaaagta |
9212280 |
T |
|
| Q |
207 |
ctttttctgcaggaggt-cgttcgtaagattgaatagagactctactaccaaaagctgaattattgaaagacataacaatcacaagtaataacaagaaag |
305 |
Q |
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| T |
9212279 |
ttttttctggtggaggttcagtggggag-tgaaatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaacaaag |
9212181 |
T |
|
| Q |
306 |
atgtatgaattgaaatagacattttgtt |
333 |
Q |
| |
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|| ||| ||||| | ||||||||||| |
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| T |
9212180 |
atacatggtttgaagtggacattttgtt |
9212153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 7250355 - 7250451
Alignment:
| Q |
237 |
gaatagagactctactaccaaaagctgaattattgaaagacataacaatcacaagtaataacaagaaagatgtatgaattgaaatagacattttgtt |
333 |
Q |
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| T |
7250355 |
gaatagagactctgctgccaaaagttaaattattgaaacacatagcaatcaaaagtagtaaaaagaaggatacatggatagaaatagacattttgtt |
7250451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 7250223 - 7250285
Alignment:
| Q |
108 |
ctccttgtttcaaaacataattaggtttttcattcacaatgatgaaatgtaactcttctgaat |
170 |
Q |
| |
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| T |
7250223 |
ctcctagtttcaaaagatattttggtttttcattcacaatgtggaaatctaactctcctgaat |
7250285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 29252658 - 29252727
Alignment:
| Q |
108 |
ctccttgtttcaaaacataattaggtttttcattcacaatgatgaaatgtaactcttctgaattttcagg |
177 |
Q |
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| T |
29252658 |
ctcctagtttcaaaatgtattttggtttttcattcacaatgttgaaatgcaactctcctgaattatcagg |
29252727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 29252803 - 29252877
Alignment:
| Q |
247 |
tctactaccaaaagctgaattattgaaagacataacaatcacaagtaataacaagaaagatgtatgaattgaaat |
321 |
Q |
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| T |
29252803 |
tctactgccaaaggttgaattactgaaacacatagcaatcacaagtagtaacaagaaggatacatggattgaaat |
29252877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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