View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8290_low_7 (Length: 255)

Name: NF8290_low_7
Description: NF8290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8290_low_7
NF8290_low_7
[»] chr8 (28 HSPs)
chr8 (1-239)||(32917252-32917489)
chr8 (20-158)||(37250740-37250877)
chr8 (20-153)||(16249616-16249748)
chr8 (20-153)||(16312826-16312958)
chr8 (85-147)||(759871-759933)
chr8 (20-148)||(16311109-16311237)
chr8 (20-153)||(34801193-34801325)
chr8 (78-165)||(19222877-19222964)
chr8 (78-165)||(43216187-43216274)
chr8 (41-146)||(40886476-40886581)
chr8 (20-148)||(37249068-37249196)
chr8 (97-153)||(15342645-15342700)
chr8 (97-153)||(15431710-15431765)
chr8 (97-153)||(15523014-15523069)
chr8 (105-153)||(16307352-16307400)
chr8 (41-168)||(14374208-14374335)
chr8 (6-108)||(37250035-37250136)
chr8 (97-146)||(360725-360774)
chr8 (94-147)||(14716099-14716152)
chr8 (20-148)||(34802887-34803014)
chr8 (112-148)||(10279439-10279475)
chr8 (78-165)||(12159659-12159746)
chr8 (6-144)||(16248853-16248986)
chr8 (6-144)||(16312063-16312196)
chr8 (78-153)||(19223997-19224072)
chr8 (6-144)||(34801923-34802056)
chr8 (97-147)||(20874945-20874995)
chr8 (105-166)||(35225125-35225186)
[»] scaffold1737 (1 HSPs)
scaffold1737 (5-171)||(1161-1329)
[»] chr6 (11 HSPs)
chr6 (5-171)||(20874830-20874998)
chr6 (20-153)||(20872844-20872976)
chr6 (20-148)||(9449959-9450088)
chr6 (20-153)||(23409666-23409798)
chr6 (47-136)||(10190744-10190835)
chr6 (97-148)||(21985945-21985996)
chr6 (84-166)||(4791139-4791221)
chr6 (97-148)||(33348521-33348572)
chr6 (97-143)||(10190082-10190128)
chr6 (20-148)||(23407923-23408049)
chr6 (99-148)||(24359914-24359963)
[»] scaffold0119 (1 HSPs)
scaffold0119 (20-146)||(40955-41080)
[»] chr3 (19 HSPs)
chr3 (78-165)||(9264791-9264878)
chr3 (20-153)||(19816981-19817113)
chr3 (41-146)||(39183780-39183885)
chr3 (41-146)||(40057240-40057345)
chr3 (47-143)||(34026297-34026393)
chr3 (41-141)||(34850200-34850300)
chr3 (36-166)||(40418604-40418731)
chr3 (31-148)||(53274-53392)
chr3 (97-147)||(20789988-20790038)
chr3 (47-144)||(34849067-34849165)
chr3 (33-146)||(40415917-40416028)
chr3 (97-148)||(2250652-2250703)
chr3 (84-167)||(34853859-34853942)
chr3 (79-166)||(32264760-32264849)
chr3 (78-153)||(52284-52359)
chr3 (94-144)||(34025066-34025116)
chr3 (7-72)||(35686139-35686205)
chr3 (22-67)||(14240961-14241006)
chr3 (23-108)||(37836161-37836246)
[»] chr5 (12 HSPs)
chr5 (20-158)||(7332512-7332649)
chr5 (20-148)||(4063616-4063744)
chr5 (20-153)||(29865451-29865583)
chr5 (20-148)||(8128015-8128142)
chr5 (97-148)||(23570942-23570993)
chr5 (20-153)||(4062520-4062652)
chr5 (20-148)||(29863734-29863861)
chr5 (7-139)||(24541378-24541509)
chr5 (84-166)||(7929086-7929168)
chr5 (6-144)||(29864696-29864829)
chr5 (41-74)||(30325251-30325284)
chr5 (97-145)||(27593829-27593876)
[»] chr7 (6 HSPs)
chr7 (20-153)||(29912952-29913084)
chr7 (7-148)||(29865571-29865714)
chr7 (41-136)||(6678715-6678811)
chr7 (85-144)||(6191290-6191349)
chr7 (94-139)||(6677941-6677986)
chr7 (20-143)||(24708812-24708933)
[»] chr4 (18 HSPs)
chr4 (20-144)||(24181373-24181498)
chr4 (20-148)||(55051507-55051635)
chr4 (85-148)||(35695674-35695737)
chr4 (94-144)||(37530505-37530555)
chr4 (94-144)||(50162726-50162776)
chr4 (20-153)||(55050406-55050538)
chr4 (20-153)||(26289575-26289707)
chr4 (23-153)||(22680814-22680943)
chr4 (94-147)||(13669006-13669059)
chr4 (94-147)||(13681863-13681916)
chr4 (33-153)||(22678582-22678702)
chr4 (78-148)||(313974-314045)
chr4 (95-170)||(11793759-11793834)
chr4 (94-148)||(284820-284874)
chr4 (97-143)||(22193088-22193134)
chr4 (84-166)||(37529157-37529239)
chr4 (35-153)||(4280018-4280136)
chr4 (97-153)||(50164641-50164697)
[»] chr2 (13 HSPs)
chr2 (78-165)||(45660608-45660695)
chr2 (23-153)||(27879452-27879582)
chr2 (41-146)||(34425239-34425344)
chr2 (41-165)||(6912712-6912836)
chr2 (84-144)||(45055177-45055237)
chr2 (96-147)||(14904813-14904864)
chr2 (85-136)||(17681280-17681331)
chr2 (20-143)||(29976259-29976382)
chr2 (41-139)||(39404639-39404738)
chr2 (20-74)||(14909793-14909847)
chr2 (97-143)||(17681990-17682036)
chr2 (96-146)||(29977004-29977054)
chr2 (99-168)||(5788426-5788495)
[»] chr1 (13 HSPs)
chr1 (41-146)||(7843879-7843984)
chr1 (20-148)||(17001523-17001651)
chr1 (20-153)||(17006071-17006203)
chr1 (97-148)||(19103076-19103127)
chr1 (22-153)||(34159891-34160020)
chr1 (94-144)||(28963143-28963193)
chr1 (95-148)||(21468038-21468091)
chr1 (20-148)||(34161609-34161737)
chr1 (20-115)||(3837618-3837713)
chr1 (78-144)||(3982424-3982490)
chr1 (84-166)||(28964459-28964541)
chr1 (84-166)||(28972583-28972665)
chr1 (78-143)||(26529302-26529367)
[»] scaffold0061 (1 HSPs)
scaffold0061 (8-139)||(37523-37654)
[»] scaffold0017 (1 HSPs)
scaffold0017 (8-139)||(161125-161256)
[»] scaffold2049 (1 HSPs)
scaffold2049 (94-143)||(638-687)
[»] scaffold0012 (1 HSPs)
scaffold0012 (94-143)||(95140-95189)
[»] scaffold0036 (1 HSPs)
scaffold0036 (99-168)||(49778-49847)
[»] scaffold0051 (1 HSPs)
scaffold0051 (9-148)||(12296-12434)
[»] scaffold0169 (2 HSPs)
scaffold0169 (9-74)||(2890-2955)
scaffold0169 (85-145)||(3666-3726)
[»] scaffold0159 (1 HSPs)
scaffold0159 (99-168)||(32799-32868)
[»] scaffold0114 (1 HSPs)
scaffold0114 (85-145)||(1028-1089)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32917252 - 32917489
Alignment:
Q  1 tgtaaaaatggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32917252 tgtaaaaatggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgggtgtaatttt 32917351  T
Q  101 ttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactcattatannnnnnnatactgtcacagacaaacacaa 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||||||    
T  32917352 ttggtaaaataattggccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactcattata-ttttttatactgtcatagacaaacacaa 32917450  T
Q  201 cccttannnnnnnnncatttatcttttctatcatgttca 239  Q
    ||||||         | ||||||||||||||||||||||    
T  32917451 cccttatttttttttcctttatcttttctatcatgttca 32917489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 37250877 - 37250740
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| |||||||| || ||||| |||||||||||| ||| |||||| ||||| | |||  ||||||| |  | |||||| |||||||||||| |||    
T  37250877 atgtgttatgttgagttcacaaaatacatgtttattagatatt-taaaattatgtagcatttcttaattgaatcaatttttttagtaaaataattaccca 37250779  T
Q  120 aaaatctccaactccttcaacaaactcatcaaatgacca 158  Q
    ||||||||||||||||| ||||||||||| |||| ||||    
T  37250778 aaaatctccaactcctttaacaaactcataaaatcacca 37250740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 16249748 - 16249616
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| || ||||| |||||||||||||||| |||||| ||||  | |||  ||||||| |  | |||||| |||||||||||| |||    
T  16249748 atgtgttatgctgagttcacaaaatacatgtttattagacatt-taaaattatgtggcatttcttaattgactcaatttttttagtaaaataattaccca 16249650  T
Q  120 aaaatctccaactccttcaacaaactcatcaaat 153  Q
    |||||||| |||||||| ||||||||||| ||||    
T  16249649 aaaatctcaaactcctttaacaaactcataaaat 16249616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 16312958 - 16312826
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| || ||||| |||||||||||||||| |||||| ||||  | |||  ||||||| |  | |||||| |||||||||||| |||    
T  16312958 atgtgttatgctgagttcacaaaatacatgtttattagacatt-taaaattatgtggcatttcttaattgactcaatttttttagtaaaataattaccca 16312860  T
Q  120 aaaatctccaactccttcaacaaactcatcaaat 153  Q
    |||||||| |||||||| ||||||||||| ||||    
T  16312859 aaaatctcaaactcctttaacaaactcataaaat 16312826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 759871 - 759933
Alignment:
Q  85 aattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactca 147  Q
    |||| ||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  759871 aattaagtctaattttttggtaaattaattatccaaaaatccccaactccttcaacaaactca 759933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 16311237 - 16311109
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| | | ||||||| ||||| |||||||||| ||||| ||||||||||| || ||||| ||||| ||  ||| ||||||||||  || ||| ||    
T  16311237 atgtgttatgctaagttgacaaaatacatgtttattatacatt-taaaatgatgtgatatttttataattaaggctaaatttttggtaatgtagttaccc 16311139  T
Q  119 aaaaatctccaactccttcaacaaactcat 148  Q
    |||||||| ||| |||||||||||||||||    
T  16311138 aaaaatcttcaaatccttcaacaaactcat 16311109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 34801193 - 34801325
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| || ||||| |||||||||||||||| |||||| ||||  | |||  ||||||| |  | |||||| |||||| ||||| |||    
T  34801193 atgtgttatgctgagttcacaaaatacatgtttattagacatt-taaaattatgtggcatttcttaattgactcaatttttttagtaaaacaattaccca 34801291  T
Q  120 aaaatctccaactccttcaacaaactcatcaaat 153  Q
    |||||||| |||||||| ||||||||||| ||||    
T  34801292 aaaatctcaaactcctttaacaaactcataaaat 34801325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 19222964 - 19222877
Alignment:
Q  78 tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactc 165  Q
    ||||| ||||||| | |||||||||||||||||||||| ||| || | ||||||| ||||||||||||||| | || |||| ||||||    
T  19222964 tttttttaattgaatctaattttttggtaaaataattacccagaactatccaacttcttcaacaaactcataatattaccaacaactc 19222877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 43216274 - 43216187
Alignment:
Q  78 tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactc 165  Q
    ||||| ||||||||| ||||||||||||||| |||||  ||||| ||||| ||||||||||||||||  || |||| ||||| |||||    
T  43216274 tttttttaattgagtttaattttttggtaaattaattgcccaaatatctcaaactccttcaacaaaccgataaaattaccagaaactc 43216187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 40886476 - 40886581
Alignment:
Q  41 aaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaatttt-ttggtaaaataattagccaaaaatctccaactccttcaa 139  Q
    ||||| |||||||||| | ||| |||||| ||||  | |||| ||||||| | ||||||| ||||||||||||||| ||||||||||||| || ||||||    
T  40886476 aaatacatgtttattacatatt-taaaattatgtggcgttttttaattgaatctaatttttttggtaaaataattatccaaaaatctccatcttcttcaa 40886574  T
Q  140 caaactc 146  Q
    |||||||    
T  40886575 caaactc 40886581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 37249196 - 37249068
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| | | ||||||| ||||| |||||||||| ||||| ||||||||||  || ||||| ||||| ||| ||| ||||||||||  || ||| ||    
T  37249196 atgtgttatgctaagttgacaaaatacatgtttattatacatt-taaaatgatgagatatttttataattaagtctaaatttttggtaatgtagttaccc 37249098  T
Q  119 aaaaatctccaactccttcaacaaactcat 148  Q
    |||||||| ||| || ||||||||||||||    
T  37249097 aaaaatcttcaaatctttcaacaaactcat 37249068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 15342700 - 15342645
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaat 153  Q
    ||||||||||||||| |||  |||||||||| |||||||||||||||||||||||||    
T  15342700 ttttttggtaaaatatttactcaaaaatctc-aactccttcaacaaactcatcaaat 15342645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 15431765 - 15431710
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaat 153  Q
    ||||||||||||||| |||  |||||||||| |||||||||||||||||||||||||    
T  15431765 ttttttggtaaaatatttactcaaaaatctc-aactccttcaacaaactcatcaaat 15431710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 15523069 - 15523014
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaat 153  Q
    ||||||||||||||| |||  |||||||||| |||||||||||||||||||||||||    
T  15523069 ttttttggtaaaatatttactcaaaaatctc-aactccttcaacaaactcatcaaat 15523014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 16307400 - 16307352
Alignment:
Q  105 taaaataattagccaaaaatctccaactccttcaacaaactcatcaaat 153  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  16307400 taaaataattacccaaaaatctccaactcctttaacaaactcataaaat 16307352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 14374208 - 14374335
Alignment:
Q  41 aaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaac 140  Q
    ||||| |||||||||| ||||| |||| |||| || | || | ||| ||||| |||| ||||||||  ||||||| |||| | | |||||||||||||||    
T  14374208 aaataaatgtttattaaacattttaaattgatttagcattctataaatgagtataatattttggtagcataattacccaatattgtccaactccttcaac 14374307  T
Q  141 aaactcatcaaatgaccagcaactcatt 168  Q
    ||| |||| |||| |  |||||||||||    
T  14374308 aaattcataaaattaatagcaactcatt 14374335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 37250136 - 37250035
Alignment:
Q  6 aaatggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggt 105  Q
    ||||||||||| | |||| ||| ||||||||||| ||||||||| ||| |||| |||  ||||||| || | ||||| ||||||||| || |||||||||    
T  37250136 aaatggaaaaaaagatgtattatgttgagttgacaaaatatatgcttagtagaaatttgaaaatgaagtgtattttt-taattgagtctatttttttggt 37250038  T
Q  106 aaa 108  Q
    |||    
T  37250037 aaa 37250035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 360725 - 360774
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactc 146  Q
    |||||||||||||| |||| |||||||||| |||| ||||||||||||||    
T  360725 ttttttggtaaaatgattatccaaaaatcttcaacgccttcaacaaactc 360774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 14716099 - 14716152
Alignment:
Q  94 taattttttggtaaaataattagccaaaaatctccaactccttcaacaaactca 147  Q
    |||||||||||||| ||||||| |||||||||  |||||| |||||||||||||    
T  14716099 taattttttggtaagataattatccaaaaatcctcaactctttcaacaaactca 14716152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 34802887 - 34803014
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| | | ||||||| ||||| |||||||||| | ||| ||||||||||| || ||||| ||||| ||| ||| |||| |||||  || ||| ||    
T  34802887 atgtgttatgctaagttgacaaaatacatgtttattataaatt-taaaatgatgtgatatttttataattaagtctaaatttt-ggtaatgtagttaccc 34802984  T
Q  119 aaaaatctccaactccttcaacaaactcat 148  Q
    |||||||| ||| |||||||||||||||||    
T  34802985 aaaaatcttcaaatccttcaacaaactcat 34803014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 10279439 - 10279475
Alignment:
Q  112 attagccaaaaatctccaactccttcaacaaactcat 148  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10279439 attacccaaaaatctccaactccttcaacaaactcat 10279475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 12159659 - 12159746
Alignment:
Q  78 tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactc 165  Q
    ||||| ||||||| | || ||||||||||||||||||| ||| |||  || |||| ||||||||||||||| | || |||| ||||||    
T  12159659 tttttttaattgaatctatttttttggtaaaataattacccagaaaaatcaaacttcttcaacaaactcataatattaccaacaactc 12159746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 16248986 - 16248853
Alignment:
Q  6 aaatggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggt 105  Q
    ||||||||||| | |||| ||| ||||||||||| ||||||||  ||| |||| |||  ||||||| || | ||||| ||||||||| ||||||||||||    
T  16248986 aaatggaaaaa-agatgtattatgttgagttgacaaaatatatacttagtagaaatttgaaaatgaagtgtattttt-taattgagtctaattttttggt 16248889  T
Q  106 aaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    ||| |||  | || ||||||||||| | |||||||||||    
T  16248888 aaa-taa--accccaaaatctccaaattcttcaacaaac 16248853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 16312196 - 16312063
Alignment:
Q  6 aaatggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggt 105  Q
    ||||||||||| | |||| ||| ||||||||||| ||||||||  ||| |||| |||  ||||||| || | ||||| ||||||||| ||||||||||||    
T  16312196 aaatggaaaaa-agatgtattatgttgagttgacaaaatatatacttagtagaaatttgaaaatgaagtgtattttt-taattgagtctaattttttggt 16312099  T
Q  106 aaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    ||| |||  | || ||||||||||| | |||||||||||    
T  16312098 aaa-taa--accccaaaatctccaaattcttcaacaaac 16312063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 19224072 - 19223997
Alignment:
Q  78 tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaat 153  Q
    ||||| ||||| ||| |||||||||||||||||| ||| | | |||||||  ||||||| ||||||||||| ||||    
T  19224072 tttttttaattaagtataattttttggtaaaatagttaccaagaaatctcttactccttaaacaaactcataaaat 19223997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 34801923 - 34802056
Alignment:
Q  6 aaatggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggt 105  Q
    ||||||||||| | |||| ||| ||||||||||| ||||||||  ||| |||| |||  ||||||| || | ||||| ||||||||| ||||||||||||    
T  34801923 aaatggaaaaa-agatgtattatgttgagttgacaaaatatatacttagtagaaatttgaaaatgaagtgtattttt-taattgagtctaattttttggt 34802020  T
Q  106 aaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    ||| |||  | || ||||||||||| | |||||||||||    
T  34802021 aaa-taa--accccaaaatctccaaattcttcaacaaac 34802056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 20874945 - 20874995
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactca 147  Q
    |||||| ||||||||| || | ||||||||||||||| |||||||||||||    
T  20874945 ttttttagtaaaataactacctaaaaatctccaactctttcaacaaactca 20874995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 35225186 - 35225125
Alignment:
Q  105 taaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactca 166  Q
    ||||||||||| |||||||| | ||| ||||||||||||||| | |||| ||| ||||||||    
T  35225186 taaaataattatccaaaaatattcaattccttcaacaaactcgtaaaattaccggcaactca 35225125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1737 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold1737
Description:

Target: scaffold1737; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 1161 - 1329
Alignment:
Q  5 aaaatggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaat--tgagtgtaatttttt 102  Q
    ||||||||||||| |||||||||   |||||||| |||||| ||  |||||||||||| |||||||||||| |||||||||||  || || |||||||||    
T  1161 aaaatggaaaaatgcatgtgttatactgagttgaagaaatacatacttattagacattttaaaatgatgtagctttttgtaatagtgggtataatttttt 1260  T
Q  103 ggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactcattata 171  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| |||  ||| ||||||||    
T  1261 ggtaaaataattagccaaaaatcttgaactccttcaacaaactcatcaaattacctacaattcattata 1329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 20874830 - 20874998
Alignment:
Q  5 aaaatggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaat--tgagtgtaatttttt 102  Q
    |||||| |||||| |||||||||  ||||||||| |||||| ||  |||||||||||| |||||||||||| |||||||||||  || || |||||||||    
T  20874830 aaaatgaaaaaatgcatgtgttatattgagttgaagaaatacatacttattagacattttaaaatgatgtagctttttgtaatagtgggtataatttttt 20874929  T
Q  103 ggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactcattata 171  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| |||  ||| ||||||||    
T  20874930 ggtaaaataattagccaaaaatcttgaactccttcaacaaactcatcaaattacctacaattcattata 20874998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 20872844 - 20872976
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| |||||||| || ||||| |||||||| |||||||| ||||| ||||  | |||  ||||||| |  | |||||| |||||||||||| |||    
T  20872844 atgtgttatgttgagttcacaaaatacatgtttataagacatta-aaaataatgtggcatttcttaattgaatcaatttttttagtaaaataattaccca 20872942  T
Q  120 aaaatctccaactccttcaacaaactcatcaaat 153  Q
    ||||||||||||||||| ||||||||||| ||||    
T  20872943 aaaatctccaactcctttaacaaactcataaaat 20872976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 9450088 - 9449959
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| | | ||||||| ||||| | |||||||||||||| ||||||||||| || ||||| ||||| ||| |||  |||||||||  || ||| ||    
T  9450088 atgtgttatgctaagttgacaaaatacacgtttattagacattttaaaatgatgtgatatttttataattaagtctaaaattttggtaatgtacttaccc 9449989  T
Q  119 aaaaatctccaactccttcaacaaactcat 148  Q
    |||||||| ||| |||||||||||||||||    
T  9449988 aaaaatcttcaaatccttcaacaaactcat 9449959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 23409798 - 23409666
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| || ||||| |||||||||||||||| |||||| ||||  | |||  ||||||| |  | |||||| |||||||||||| |||    
T  23409798 atgtgttatgatgagttcacaaaatacatgtttattagacatt-taaaattatgtggcatttcttaattgactcaatttttttagtaaaataattaccca 23409700  T
Q  120 aaaatctccaactccttcaacaaactcatcaaat 153  Q
    |||||||| |||||||| ||||||||||| ||||    
T  23409699 aaaatctcaaactcctttaacaaactcataaaat 23409666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 10190744 - 10190835
Alignment:
Q  47 atgtttattagacattataaaatgatgtatctttttgtaa--ttgagtgtaattttttggtaaaataattagccaaaaatctccaactcctt 136  Q
    |||||| ||| ||||| ||||||||||| | ||||| |||  || ||| ||| |||||||||||||||||| ||||| ||||||||||||||    
T  10190744 atgtttgttaaacattttaaaatgatgtttttttttttaaaattaagtctaactttttggtaaaataattacccaaatatctccaactcctt 10190835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 21985945 - 21985996
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactcat 148  Q
    ||||||| |||||| |||| |||||||||| |||||||||||||||||||||    
T  21985945 ttttttgctaaaatgattatccaaaaatcttcaactccttcaacaaactcat 21985996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 4791221 - 4791139
Alignment:
Q  84 taattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactca 166  Q
    ||||||| | |||||||||||||||||||||| |||||||||||  |||| |||||| ||| |||  ||| ||| ||||||||    
T  4791221 taattgaatctaattttttggtaaaataattatccaaaaatctcggactcattcaaccaacccatacaataaccggcaactca 4791139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 33348572 - 33348521
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactcat 148  Q
    |||||||||||||| |||| | |||||||| |||||||||||| ||||||||    
T  33348572 ttttttggtaaaatgattatctaaaaatcttcaactccttcaaaaaactcat 33348521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 10190082 - 10190128
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaa 143  Q
    ||||||| |||||||| || || ||||||||||||||||||||||||    
T  10190082 ttttttgctaaaataactaccccaaaatctccaactccttcaacaaa 10190128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 23408049 - 23407923
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| | | ||||||| ||||| |||||||||| ||||| ||||||||||| || ||||| ||||| ||| ||| |||| |||||  || ||| ||    
T  23408049 atgtgttatgctaagttgacaaaatacatgtttattatacatt-taaaatgatgtgatatttttataattaagtctaaatttt-ggtaatgtagttaccc 23407952  T
Q  119 aaaaatctccaactccttcaacaaactcat 148  Q
    |||| ||| ||| |||||||||||||||||    
T  23407951 aaaa-tcttcaaatccttcaacaaactcat 23407923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 24359963 - 24359914
Alignment:
Q  99 ttttggtaaaataattagccaaaaatctccaactccttcaacaaactcat 148  Q
    |||||||||  |||||| |||||||||||||||| ||||||||| |||||    
T  24359963 ttttggtaagttaattatccaaaaatctccaacttcttcaacaatctcat 24359914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 40955 - 41080
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| |||||||| || ||||| ||||||||||||||||| ||||| ||||  | |||  ||||||| |  | |||||| |||||||||||| |||    
T  40955 atgtgttatgttgagttcacaaaatacatgtttattagacatta-aaaattatgtggcatttcttaattgaatcaatttttttagtaaaataattaccca 41053  T
Q  120 aaaatctccaactccttcaacaaactc 146  Q
    ||||||||||||||||| |||||||||    
T  41054 aaaatctccaactcctttaacaaactc 41080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 9264791 - 9264878
Alignment:
Q  78 tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactc 165  Q
    ||||| ||||||||| ||||||||||||||| |||||| ||||| ||||| ||||||||||||||||  ||||||| ||||| |||||    
T  9264791 tttttttaattgagtttaattttttggtaaattaattacccaaatatctcaaactccttcaacaaaccgatcaaattaccagaaactc 9264878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 19817113 - 19816981
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| || ||||| |||||||||||||||| |||||| ||||  | |||  ||||||| |  | |||||| |||||||||||| |||    
T  19817113 atgtgttatgctgagttcacaaaatacatgtttattagacatt-taaaattatgtggcatttcttaattgactcaatttttttagtaaaataattaccca 19817015  T
Q  120 aaaatctccaactccttcaacaaactcatcaaat 153  Q
    |||||||| |||||||| ||||||||||| ||||    
T  19817014 aaaatctcaaactcctttaacaaactcataaaat 19816981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 39183780 - 39183885
Alignment:
Q  41 aaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaatttt-ttggtaaaataattagccaaaaatctccaactccttcaa 139  Q
    ||||| |||||||||| | ||| |||||| ||||| | |||| ||||||| | ||||||| |||||||||||||||  ||||||||||||||| ||||||    
T  39183780 aaatacatgtttattacatatt-taaaattatgtagcgttttttaattgaatctaatttttttggtaaaataattattcaaaaatctccaacttcttcaa 39183878  T
Q  140 caaactc 146  Q
    |||||||    
T  39183879 caaactc 39183885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 40057240 - 40057345
Alignment:
Q  41 aaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaatttt-ttggtaaaataattagccaaaaatctccaactccttcaa 139  Q
    ||||| |||||||||| | ||| |||||| ||||  | |||| ||||||| | ||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  40057240 aaatacatgtttattacatatt-taaaattatgtggcgttttttaattgaatctaatttttttggtaaaataattatccaaaaatctccaacttcttcaa 40057338  T
Q  140 caaactc 146  Q
    |||||||    
T  40057339 caaactc 40057345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 34026297 - 34026393
Alignment:
Q  47 atgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaa 143  Q
    |||||||||| | ||| |||||||||||  |||||| ||||| ||| |||||||||| ||||||||||| |  ||||||| ||| ||||||||||||    
T  34026297 atgtttattatatattttaaaatgatgtgactttttttaattaagtttaattttttgttaaaataattacctcaaaatctacaaatccttcaacaaa 34026393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 34850300 - 34850200
Alignment:
Q  41 aaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaac 140  Q
    ||||||||  |||||||| ||| |||||||||||  | |||| ||||||||| || |||||| |||||||||||| || ||||||||| | |||||||||    
T  34850300 aaatatatacttattagaaattttaaaatgatgtgacgttttttaattgagtctatttttttcgtaaaataattaccccaaaatctcctaatccttcaac 34850201  T
Q  141 a 141  Q
    |    
T  34850200 a 34850200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 40418604 - 40418731
Alignment:
Q  36 tgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactcct 135  Q
    |||||||||| || ||||||||||||| ||||| || ||  | |||| ||||| |||  ||||||||| ||||||||||| |||||||     |||||||    
T  40418604 tgacgaaatacatatttattagacattttaaaaagacgtgaccttttttaattaagttaaattttttgataaaataattacccaaaaaat---aactcct 40418700  T
Q  136 tcaacaaactcatcaaatgaccagcaactca 166  Q
    ||||||||| ||| |||| ||||||||||||    
T  40418701 tcaacaaacccataaaattaccagcaactca 40418731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 53274 - 53392
Alignment:
Q  31 tgagttgacgaaatatatgtttattagacattataaaatgatgt---atctttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctc 127  Q
    ||||||||| ||||||||||| |||||||||| ||||||  |||   || ||||| ||||||| | ||||||||||| |||||||||| ||| || | ||    
T  53274 tgagttgacaaaatatatgttcattagacatt-taaaattttgtggtattttttt-taattgaatctaattttttggcaaaataattacccagaactatc 53371  T
Q  128 caactccttcaacaaactcat 148  Q
    ||||| |||||||||||||||    
T  53372 caacttcttcaacaaactcat 53392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 20789988 - 20790038
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactca 147  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||||||    
T  20789988 ttttttggtaaaatgattatccaaaaatcttcaactccttcaacaaactca 20790038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 34849165 - 34849067
Alignment:
Q  47 atgtttattagacattataaaatgatgtatct-ttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    ||||||||||||||||  ||||||| ||  |  |||| ||||| ||| |||||||||||||||||||||| |||||||||| ||||  |||||||||||    
T  34849165 atgtttattagacatttgaaaatgacgtgacgcttttttaattaagtttaattttttggtaaaataattacccaaaaatcttcaaccacttcaacaaac 34849067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 40415917 - 40416028
Alignment:
Q  33 agttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaac 131  Q
    ||||||| |||||||||||||||||||||| ||||||||| | | | |||| ||||| ||| | |||| ||| ||||||||||| | ||||||    |||    
T  40415917 agttgacaaaatatatgtttattagacattttaaaatgatttgaccgttttttaattaagtctgatttcttgataaaataattaccaaaaaat---taac 40416013  T
Q  132 tccttcaacaaactc 146  Q
    |||||||||||||||    
T  40416014 tccttcaacaaactc 40416028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 2250652 - 2250703
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactcat 148  Q
    |||||||||||||| |||| |||||| ||| |||||||||||||||||||||    
T  2250652 ttttttggtaaaatgattatccaaaattctacaactccttcaacaaactcat 2250703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 34853942 - 34853859
Alignment:
Q  84 taattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactcat 167  Q
    ||||||| | |||||||||||||||||||||| |||||||||||  |||| |||||| ||| ||  |||| ||| |||||||||    
T  34853942 taattgaatctaattttttggtaaaataattacccaaaaatctcggactcattcaaccaacccagaaaataaccggcaactcat 34853859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 32264849 - 32264760
Alignment:
Q  79 ttttgtaattgagtgtaatttttt--ggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactca 166  Q
    |||| ||||||| | |||||||||  ||||||| ||| | |||||||||||||| ||||||||||||||||   ||| ||||||||||||    
T  32264849 ttttttaattgaatctaatttttttaggtaaaacaataatccaaaaatctccaagtccttcaacaaactcaaataattaccagcaactca 32264760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 52284 - 52359
Alignment:
Q  78 tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaat 153  Q
    ||||| ||||| ||| |||||||||| ||||||| ||| | | |||||||  ||||||||||||||||||| ||||    
T  52284 tttttttaattaagtataattttttgataaaatagttaccaagaaatctcttactccttcaacaaactcataaaat 52359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 34025066 - 34025116
Alignment:
Q  94 taattttttggtaaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    |||||||||||||||||||| | ||| |||||| ||||||| |||||||||    
T  34025066 taattttttggtaaaataatcacccataaatcttcaactccgtcaacaaac 34025116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 35686139 - 35686205
Alignment:
Q  7 aatggaaaa-atacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgat 72  Q
    ||||||||| |||||||||||| | ||| || || ||||| |||||||||||||||| |||||||||    
T  35686139 aatggaaaatatacatgtgttatgatgaattaacaaaatacatgtttattagacattttaaaatgat 35686205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 14241006 - 14240961
Alignment:
Q  22 gtgttaggttgagttgacgaaatatatgtttattagacattataaa 67  Q
    |||||| ||||||||||| ||||| |||||||||||||||| ||||    
T  14241006 gtgttatgttgagttgacaaaatacatgtttattagacattttaaa 14240961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 37836246 - 37836161
Alignment:
Q  23 tgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaa 108  Q
    ||||| ||||||||||| ||||| |||||||||||||||  | ||||| | |  |||||| ||||||| | ||| |||||||||||    
T  37836246 tgttatgttgagttgacaaaatacatgtttattagacatgtttaaatgttttgactttttttaattgaatataactttttggtaaa 37836161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 7332649 - 7332512
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| || |||||  ||||||||||||||| |||||| ||||  | |||  ||||||| |  | |||||| |||||||||||| |||    
T  7332649 atgtgttatgatgagttcacaaaatacgtgtttattagacatt-taaaattatgtgacatttcttaattgaatcaatttttttagtaaaataattaccca 7332551  T
Q  120 aaaatctccaactccttcaacaaactcatcaaatgacca 158  Q
    ||||||||||||||||| ||||||||||| |||| ||||    
T  7332550 aaaatctccaactcctttaacaaactcataaaatcacca 7332512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 4063616 - 4063744
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| | | ||||||| ||||| |||||||||| ||||| |||| |||||| || ||||| ||||| ||| ||| ||||||||||  || ||| ||    
T  4063616 atgtgttatgctaagttgacaaaatacatgtttattatacatt-taaagtgatgtgatatttttataattaagtctaaatttttggtaatgtagttaccc 4063714  T
Q  119 aaaaatctccaactccttcaacaaactcat 148  Q
    |||||||| ||| |||||||||||||||||    
T  4063715 aaaaatcttcaaatccttcaacaaactcat 4063744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 29865583 - 29865451
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| || ||||| |||||||||||||||| |||||| ||||  | |||  ||| ||| |  | |||||| |||||||||||| |||    
T  29865583 atgtgttatgctgagttcacaaaatacatgtttattagacatt-taaaattatgtggcatttcttaactgactcaatttttttagtaaaataattaccca 29865485  T
Q  120 aaaatctccaactccttcaacaaactcatcaaat 153  Q
    |||||||| |||||||| ||||||||||| ||||    
T  29865484 aaaatctcaaactcctttaacaaactcataaaat 29865451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 8128142 - 8128015
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| || ||||| |||||||||||||||| |||||| ||||  | |||  ||||||| |  | |||||| |||||||||||| |||    
T  8128142 atgtgttatgctgagttcacaaaatacatgtttattagacatt-taaaattatgtgacatttcttaattgaatcaatttttttagtaaaataattaccca 8128044  T
Q  120 aaaatctccaactccttcaacaaactcat 148  Q
    |||||||| |||||||| ||||| |||||    
T  8128043 aaaatctcaaactcctttaacaagctcat 8128015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 23570993 - 23570942
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactcat 148  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||||||||    
T  23570993 ttttttggtaaaatgattatccaaaaatcttcaactccttcaacaaactcat 23570942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 4062520 - 4062652
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| |  ||||| |||||||||||| ||| |||||| ||||  | |||  ||||||| |  | |||||| ||||| |||||| |||    
T  4062520 atgtgttatgctgagttcagaaaatacatgtttattagagatt-taaaattatgtggcatttcttaattgaatcaatttttttagtaaagtaattaccca 4062618  T
Q  120 aaaatctccaactccttcaacaaactcatcaaat 153  Q
    ||||||||||||||||| ||||||||||| ||||    
T  4062619 aaaatctccaactcctttaacaaactcataaaat 4062652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 29863861 - 29863734
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| | | ||||||| ||||| |||||||||| ||||| ||||||||||| || ||||| ||||| ||| ||| |||| |||||  || ||| ||    
T  29863861 atgtgttatgctaagttgacaaaatacatgtttattatacatt-taaaatgatgtgatatttttataattaagtctaaatttt-ggtaatgtagttaccc 29863764  T
Q  119 aaaaatctccaactccttcaacaaactcat 148  Q
    |||||||| ||| |||||||||||||||||    
T  29863763 aaaaatcttcaaatccttcaacaaactcat 29863734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 24541378 - 24541509
Alignment:
Q  7 aatggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggta 106  Q
    |||||||||||  |||||||| |||||||| || |||||  |||||||||||||||  ||| ||||||  | |||| ||| ||||| |||  ||||||||    
T  24541378 aatggaaaaatgtatgtgttatgttgagtttacaaaatacttgtttattagacatttaaaattgatgtgacattttttaa-tgagtctaaaattttggta 24541476  T
Q  107 aaataattagccaaaaatctccaactccttcaa 139  Q
      ||||||| |||  ||||||||||||||||||    
T  24541477 gcataattatccagtaatctccaactccttcaa 24541509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 7929086 - 7929168
Alignment:
Q  84 taattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactca 166  Q
    ||||||| | |||||||||||||||||||||| |||||||||||  |||| |||||| ||| ||| |||| | | ||||||||    
T  7929086 taattgaatctaattttttggtaaaataattacccaaaaatctcggactcattcaaccaacccataaaataatcggcaactca 7929168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 29864829 - 29864696
Alignment:
Q  6 aaatggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggt 105  Q
    ||||||||||| | |||| ||| ||||||||||| ||||||||  ||| |||| |||  ||||||| || | ||||| ||||||||| ||||||||||||    
T  29864829 aaatggaaaaa-agatgtattatgttgagttgacaaaatatatacttagtagaaatttgaaaatgaagtgtattttt-taattgagtctaattttttggt 29864732  T
Q  106 aaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    ||| |||  | || ||||||||||| | |||||||||||    
T  29864731 aaa-taa--accccaaaatctccaaattcttcaacaaac 29864696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 30325284 - 30325251
Alignment:
Q  41 aaatatatgtttattagacattataaaatgatgt 74  Q
    |||||||||||||||||||||| |||||||||||    
T  30325284 aaatatatgtttattagacattttaaaatgatgt 30325251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 27593876 - 27593829
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaact 145  Q
    ||||||||||||||||||| || ||||||| ||||| ||||||||||||    
T  27593876 ttttttggtaaaataattatcc-aaaatcttcaacttcttcaacaaact 27593829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 29912952 - 29913084
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| || ||||| |||||||||||||||| |||||| ||||  | |||  ||||||| |  | |||||| |||||||||||| |||    
T  29912952 atgtgttatgctgagttcacaaaatacatgtttattagacatt-taaaattatgtggcatttcttaattgaataaatttttttagtaaaataattaccca 29913050  T
Q  120 aaaatctccaactccttcaacaaactcatcaaat 153  Q
    || |||||||||||||| ||||||||||| ||||    
T  29913051 aatatctccaactcctttaacaaactcataaaat 29913084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 29865714 - 29865571
Alignment:
Q  7 aatggaaaaatacatgt--gttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatcttt-ttgtaattgagtgtaattttttg 103  Q
    ||||||||| |||||||  |||| ||| | ||||| ||||| |||||||||||||||| |||| | ||||  | || || || |||| | |||||||||     
T  29865714 aatggaaaactacatgtatgttatgttaaattgacaaaatacatgtttattagacatt-taaagtcatgttacgttcttttatttgaatttaattttttc 29865616  T
Q  104 gtaaaataattagccaaaaatctccaactccttcaacaaactcat 148  Q
    ||||||||||||  ||||||| ||| |||||||||||||||||||    
T  29865615 gtaaaataattaatcaaaaatatccgactccttcaacaaactcat 29865571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 6678811 - 6678715
Alignment:
Q  41 aaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagc-caaaaatctccaactcctt 136  Q
    ||||| |||||||||||||||| ||||| |||    | |||| ||||| ||| |||||||||||||||||||||| | |||||||||| ||||||||    
T  6678811 aaatacatgtttattagacattttaaaaagatcagacattttttaattaagtctaattttttggtaaaataattaccgcaaaaatctcgaactcctt 6678715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 6191290 - 6191349
Alignment:
Q  85 aattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    |||||||| ||||||||||||||| |||||| ||||| ||||| |||| |||||||||||    
T  6191290 aattgagtttaattttttggtaaattaattacccaaatatctcaaactacttcaacaaac 6191349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 6677986 - 6677941
Alignment:
Q  94 taattttttggtaaaataattagccaaaaatctccaactccttcaa 139  Q
    |||||||||||||||||| ||| || ||||||||||| ||||||||    
T  6677986 taattttttggtaaaatatttatccgaaaatctccaattccttcaa 6677941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 24708812 - 24708933
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| ||||| ||||  ||||| ||| |||||||||||| |||| ||||||  | |||| | |  |||| |||| ||||||||  ||||||| |||    
T  24708812 atgtgttatgttgaattgataaaatacatgcttattagacattttaaattgatgtgacatttttttaaagagtctaatattttggtagcataattatcca 24708911  T
Q  120 aaaatctccaactccttcaacaaa 143  Q
    | ||  ||||||||||||||||||    
T  24708912 ataa--tccaactccttcaacaaa 24708933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 24181498 - 24181373
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatc-tttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| ||||||||||| ||||| ||||||||| |||||| | ||||| |||  | ||||| ||| |||||  |||||||||||||| |||||| ||    
T  24181498 atgtgttatgttgagttgacaaaatacatgtttattggacatttttaaatgttgtggcatttttttaactgagttgaattttttggtaaattaattaccc 24181399  T
Q  119 aaaaatctccaactccttcaacaaac 144  Q
    ||| ||||| |||| |||||||||||    
T  24181398 aaatatctcaaacttcttcaacaaac 24181373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 55051507 - 55051635
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| | | ||||||| ||||| |||||||||| ||||| |||| |||||| || ||||| ||||| ||| ||| ||||||||||  || ||| ||    
T  55051507 atgtgttatgctaagttgacaaaatacatgtttattatacatt-taaagtgatgtgatatttttataattaagtctaaatttttggtaatgtagttaccc 55051605  T
Q  119 aaaaatctccaactccttcaacaaactcat 148  Q
    |||||||| ||| |||||||||||||||||    
T  55051606 aaaaatcttcaaatccttcaacaaactcat 55051635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 35695674 - 35695737
Alignment:
Q  85 aattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcat 148  Q
    |||||| | ||||||||||||||| | |||| ||||||||||||||||||||||| ||||||||    
T  35695674 aattgaatctaattttttggtaaagttattatccaaaaatctccaactccttcaataaactcat 35695737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 37530555 - 37530505
Alignment:
Q  94 taattttttggtaaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    |||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  37530555 taattttttggtaaaataattatccaaaaatcttcaactctttcaacaaac 37530505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 50162726 - 50162776
Alignment:
Q  94 taattttttggtaaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    |||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  50162726 taattttttggtaaaataattacccaaaaatcttcaactctttcaacaaac 50162776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 55050406 - 55050538
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| | |||||| |  ||||| |||||||||||||||| |||||| |||| || ||| | ||||||| |  | |||||| ||||| |||||| ||    
T  55050406 atgtgttatgctgagttcagaaaatacatgtttattagacatt-taaaatcatgtgatatttct-taattgaattaatttttttagtaaagtaattaccc 55050503  T
Q  119 aaaaatctccaactccttcaacaaactcatcaaat 153  Q
    |||||||||||||||||| ||||||||||| ||||    
T  55050504 aaaaatctccaactcctttaacaaactcataaaat 55050538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 26289707 - 26289575
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| || ||| | |||||||||| ||||| |||||| ||||  | |||  ||||||| |  | |||||| |||||||||||| |||    
T  26289707 atgtgttatgctgagttcacaaaagacatgtttattacacatt-taaaattatgtgacatttcttaattgaatcaatttttttagtaaaataattaccca 26289609  T
Q  120 aaaatctccaactccttcaacaaactcatcaaat 153  Q
    |||||||| |||||||| ||||||||||| ||||    
T  26289608 aaaatctcaaactcctttaacaaactcataaaat 26289575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 22680943 - 22680814
Alignment:
Q  23 tgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgta-tctttttgtaattgagtgtaattttttggtaaaataattagccaaa 121  Q
    ||||| ||||||||||| ||||| |||||||||||||||| || ||| ||||| | ||||| ||| ||||| ||||||||| |||||||| | |  ||||    
T  22680943 tgttatgttgagttgacaaaatacatgtttattagacatt-tacaattatgtattgtttttttaaatgagtataatttttt-gtaaaatagtcactcaaa 22680846  T
Q  122 aatctccaactccttcaacaaactcatcaaat 153  Q
    |||||| ||||| | |||||||| ||| ||||    
T  22680845 aatctctaactcatacaacaaacccataaaat 22680814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 13669059 - 13669006
Alignment:
Q  94 taattttttggtaaaataattagccaaaaatctccaactccttcaacaaactca 147  Q
    ||||||||| ||||| |||||| | ||||||||||||| |||||||||||||||    
T  13669059 taattttttagtaaattaattatctaaaaatctccaaccccttcaacaaactca 13669006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 13681916 - 13681863
Alignment:
Q  94 taattttttggtaaaataattagccaaaaatctccaactccttcaacaaactca 147  Q
    ||||||||| ||||| |||||| | ||||||||||||| |||||||||||||||    
T  13681916 taattttttagtaaattaattatctaaaaatctccaaccccttcaacaaactca 13681863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 22678702 - 22678582
Alignment:
Q  33 agttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaact 132  Q
    ||||||| ||||| || |||| |  ||||| |||||||||||  | |||| ||||| ||| |||||||||||||||||| ||| | | |||||||  |||    
T  22678702 agttgacaaaatacatatttagtcaacattttaaaatgatgtgacattttttaattaagtataattttttggtaaaatagttaccaagaaatctcttact 22678603  T
Q  133 ccttcaacaaactcatcaaat 153  Q
     ||||||||||| ||| ||||    
T  22678602 acttcaacaaacccataaaat 22678582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 313974 - 314045
Alignment:
Q  78 tttttgtaattgagtgtaattttttggtaaaataattagccaaa-aatctccaactccttcaacaaactcat 148  Q
    ||||| ||||||| | |||||||||||||||||| ||  ||||| ||||||||||||||| || ||||||||    
T  313974 tttttttaattgaatctaattttttggtaaaatagttgtccaaagaatctccaactccttgaagaaactcat 314045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 11793759 - 11793834
Alignment:
Q  95 aattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactcattat 170  Q
    |||| ||||| |||||||||| ||||||||||||||||||| | |||||| ||| |||| ||   |||||||||||    
T  11793759 aattgtttggaaaaataattatccaaaaatctccaactcctccgacaaacccataaaattactgacaactcattat 11793834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 284820 - 284874
Alignment:
Q  94 taattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcat 148  Q
    |||| ||||||||  ||||||| ||| |||||||||||| |||||||||||||||    
T  284820 taatattttggtagtataattatccataaatctccaacttcttcaacaaactcat 284874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 22193088 - 22193134
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaa 143  Q
    |||||||||||| |||| | ||||||||||||||| |||||||||||    
T  22193088 ttttttggtaaattaatcatccaaaaatctccaaccccttcaacaaa 22193134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 37529239 - 37529157
Alignment:
Q  84 taattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactca 166  Q
    ||||||||| |||||||||||  ||||||||| | ||||| ||| | ||| ||||||||| |||| |||| |||| |||||||    
T  37529239 taattgagtctaattttttggataaataattaccaaaaaaactctatctctttcaacaaaatcataaaattaccaacaactca 37529157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 4280136 - 4280018
Alignment:
Q  35 ttgacgaaatatatgtttattagacattataaaatgatgtatc--tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaact 132  Q
    ||||| |||||||||||||||| ||||| |||||| ||||  |  ||||| ||||||| | |  |||||| ||||||||||||  ||||||| || ||||    
T  4280136 ttgacaaaatatatgtttattacacatt-taaaattatgtggcgctttttttaattgaatatg-ttttttagtaaaataattacgcaaaaatttcaaact 4280039  T
Q  133 ccttcaacaaactcatcaaat 153  Q
    | |||||||||||||| ||||    
T  4280038 ctttcaacaaactcataaaat 4280018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 50164641 - 50164697
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaat 153  Q
    ||||||||||||||||||| ||||||| ||| | ||| ||||||||| |||| ||||    
T  50164641 ttttttggtaaaataattacccaaaaaactcaatctctttcaacaaaatcataaaat 50164697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 45660608 - 45660695
Alignment:
Q  78 tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactc 165  Q
    ||||| ||||||||| ||||||||||||||| |||||| ||||| ||||| ||||||||||||||||  || |||| ||||| |||||    
T  45660608 tttttttaattgagtttaattttttggtaaattaattacccaaatatctcaaactccttcaacaaaccgataaaattaccagaaactc 45660695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 27879452 - 27879582
Alignment:
Q  23 tgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagccaaaa 122  Q
    ||||| ||||||||||| ||||| || ||||||| | ||| |||||| ||||  | |||| ||||| ||| |||||||| |||||||||||||   |||     
T  27879452 tgttatgttgagttgacaaaatacatatttattaaatattttaaaattatgtgacattttttaattaagtataatttttgggtaaaataattacttaaat 27879551  T
Q  123 atctccaactccttcaacaaactcatcaaat 153  Q
    || ||  ||||||||||||||||||| ||||    
T  27879552 atttcatactccttcaacaaactcataaaat 27879582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 34425344 - 34425239
Alignment:
Q  41 aaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaatttttt-ggtaaaataattagccaaaaatctccaactccttcaa 139  Q
    ||||| |||||||||| | ||| |||||| ||||  | |||| ||||||| | ||||||||| |||||||||||||  ||||||||||||||| ||||||    
T  34425344 aaatacatgtttattacatatt-taaaattatgtggcgttttttaattgaatctaatttttttggtaaaataattattcaaaaatctccaacttcttcaa 34425246  T
Q  140 caaactc 146  Q
    |||||||    
T  34425245 caaactc 34425239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 6912712 - 6912836
Alignment:
Q  41 aaatatatgtttattagacattataaaatgatgtatc-tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaa 139  Q
    ||||||||||| |||||||||| |||||| | ||  | ||||| ||||||| | |||||||||||||||||||||  ||| |||| || |||| ||||||    
T  6912712 aaatatatgttcattagacatt-taaaattacgtggcatttttttaattgaatctaattttttggtaaaataattgcccagaaatatctaacttcttcaa 6912810  T
Q  140 caaactcatcaaatgaccagcaactc 165  Q
    ||||||||| | || |||| ||||||    
T  6912811 caaactcataatattaccaacaactc 6912836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 45055237 - 45055177
Alignment:
Q  84 taattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    ||||||||| || |||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  45055237 taattgagtttatttttttggtaaattaattacccaaatatctcaaactccttcaacaaac 45055177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 14904813 - 14904864
Alignment:
Q  96 attttttggtaaaataattagccaaaaatctccaactccttcaacaaactca 147  Q
    |||||||||||||||||||| ||||||||||  ||||| |||||||||||||    
T  14904813 attttttggtaaaataattacccaaaaatctataactcgttcaacaaactca 14904864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 17681331 - 17681280
Alignment:
Q  85 aattgagtgtaattttttggtaaaataattagccaaaaatctccaactcctt 136  Q
    |||| ||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  17681331 aattaagtctaactttttggtaaaataattatccaaaaatctccaactcctt 17681280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 29976382 - 29976259
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||  ||||||||||  ||||||||| || || || ||| ||||||||||| || ||||| ||||||||| ||| |||||| |||||||||||       
T  29976382 atgtgttttgttgagttgaaaaaatatatgattgtttgaaattttaaaatgatgtgatgtttttttaattgagtctaa-tttttgataaaataattatat 29976284  T
Q  119 aaaaatctccaactccttcaacaaa 143  Q
     ||||||| ||| ||||||||||||    
T  29976283 caaaatcttcaattccttcaacaaa 29976259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 39404738 - 39404639
Alignment:
Q  41 aaatatatgtttattagacattataaaatgatgtatc-tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaa 139  Q
    ||||| ||| |||||||| ||| |||||| |||| || ||||| | ||| ||| |||||||||||||||||| ||| || |||||||| || ||||||||    
T  39404738 aaatacatgcttattagaaattttaaaataatgtgtcattttttttatttagtctaattttttggtaaaatacttatccgaaaatctcaaattccttcaa 39404639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 14909793 - 14909847
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt 74  Q
    |||||||| |||||||||| |||||| ||| ||||||||||||  ||||||||||    
T  14909793 atgtgttatgttgagttgatgaaatacatgattattagacatttaaaaatgatgt 14909847  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 17682036 - 17681990
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaa 143  Q
    ||||||| |||||||| || || ||||||||||||||||||||||||    
T  17682036 ttttttgctaaaataactaccccaaaatctccaactccttcaacaaa 17681990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 29977054 - 29977004
Alignment:
Q  96 attttttggtaaaataattagccaaaaatctccaactccttcaacaaactc 146  Q
    ||||||||||||||||||||  ||||||| || ||||| ||||||||||||    
T  29977054 attttttggtaaaataattacacaaaaatttcaaactctttcaacaaactc 29977004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 5788495 - 5788426
Alignment:
Q  99 ttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactcatt 168  Q
    ||||||||  ||||||  |||| ||| |||||||||||||||||| |||| |||| |||||||| |||||    
T  5788495 ttttggtagcataattgcccaataatttccaactccttcaacaaattcataaaattaccagcaaatcatt 5788426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 7843984 - 7843879
Alignment:
Q  41 aaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaatttttt-ggtaaaataattagccaaaaatctccaactccttcaa 139  Q
    ||||| |||||||||| | ||| |||||| ||||  | |||| ||||||| | ||||||||| ||||||||||||| |||||||||||||||| ||||||    
T  7843984 aaatacatgtttattacatatt-taaaattatgtggcgttttttaattgaatctaatttttttggtaaaataattatccaaaaatctccaacttcttcaa 7843886  T
Q  140 caaactc 146  Q
    |||||||    
T  7843885 caaactc 7843879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 17001651 - 17001523
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| | | ||||||| ||||| |||||||||| ||||| |||| |||||| || ||||| ||||| ||| ||| ||||||||||  || ||| ||    
T  17001651 atgtgttatgctaagttgacaaaatacatgtttattatacatt-taaagtgatgtgatatttttataattaagtttaaatttttggtaatgtagttaccc 17001553  T
Q  119 aaaaatctccaactccttcaacaaactcat 148  Q
    |||||||| ||| |||||||||||||||||    
T  17001552 aaaaatcttcaaatccttcaacaaactcat 17001523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 17006203 - 17006071
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagcca 119  Q
    |||||||| | |||||| |  ||||| |||||||||||||||| |||||| ||||  | |||  ||||||| |  | |||||| |||||||||||| |||    
T  17006203 atgtgttatgctgagttcaaaaaatacatgtttattagacatt-taaaattatgtgacatttcttaattgaatcaatttttttagtaaaataattaccca 17006105  T
Q  120 aaaatctccaactccttcaacaaactcatcaaat 153  Q
    |||||||| |||||||| ||||||||||| ||||    
T  17006104 aaaatctctaactcctttaacaaactcataaaat 17006071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 19103127 - 19103076
Alignment:
Q  97 ttttttggtaaaataattagccaaaaatctccaactccttcaacaaactcat 148  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||||||||    
T  19103127 ttttttggtaaaatgattatccaaaaatcttcaactccttcaacaaactcat 19103076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 34159891 - 34160020
Alignment:
Q  22 gtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataattagccaaa 121  Q
    |||||| | |||||| || ||||| |||||||||||| ||| |||||| ||||  | |||  ||||||| |  |||||||| |||||||||||| |||||    
T  34159891 gtgttatgctgagttcacaaaatacatgtttattagagatt-taaaattatgtggcatttcttaattgaatc-aatttttttgtaaaataattatccaaa 34159988  T
Q  122 aatctccaactccttcaacaaactcatcaaat 153  Q
    |||||||||||| || ||||||||||| ||||    
T  34159989 aatctccaactcttttaacaaactcataaaat 34160020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 28963143 - 28963193
Alignment:
Q  94 taattttttggtaaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    |||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  28963143 taattttttggtaaaataattatccaaaaatcttcaactctttcaacaaac 28963193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 21468091 - 21468038
Alignment:
Q  95 aattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcat 148  Q
    |||||||||||||||| |||| |||||| ||| |||||||||||||||||||||    
T  21468091 aattttttggtaaaatgattatccaaaattctacaactccttcaacaaactcat 21468038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 34161609 - 34161737
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaaaataattagcc 118  Q
    |||||||| | | ||||||| ||||| |||||||||| ||||| |||| |||||| || ||||| ||||| ||| ||| |||||| |||  || ||| ||    
T  34161609 atgtgttatgctaagttgacaaaatacatgtttattatacatt-taaagtgatgtgatatttttataattaagtctaaatttttgttaatgtagttaccc 34161707  T
Q  119 aaaaatctccaactccttcaacaaactcat 148  Q
    |||||||| ||| |||||||||||||||||    
T  34161708 aaaaatcttcaaatccttcaacaaactcat 34161737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 3837713 - 3837618
Alignment:
Q  20 atgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaaaataatta 115  Q
    |||||||| | |||||| || ||||| ||| |||||| ||||| |||||||||  |  ||||| ||||| ||| |||||| |||||||||||||||    
T  3837713 atgtgttatgctgagtttacaaaatacatgattattaaacattttaaaatgatagagttttttttaattaagtctaatttgttggtaaaataatta 3837618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 3982424 - 3982490
Alignment:
Q  78 tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaac 144  Q
    ||||| ||||||| |  |||||||||  |||||||||| ||||||||||| |||||||| |||||||    
T  3982424 tttttttaattgaatcaaattttttgaaaaaataattacccaaaaatctcaaactcctttaacaaac 3982490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 28964459 - 28964541
Alignment:
Q  84 taattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactca 166  Q
    ||||||||| |||||||||||  ||||||||| | ||||| ||| | ||| ||||||||| |||| |||| |||| |||||||    
T  28964459 taattgagtctaattttttggataaataattaccaaaaaaactctatctctttcaacaaaatcataaaattaccaacaactca 28964541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 28972583 - 28972665
Alignment:
Q  84 taattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactca 166  Q
    ||||||||| |||||||||||  ||||||||| | ||||| ||| | ||| ||||||||| |||| |||| |||| |||||||    
T  28972583 taattgagtctaattttttggataaataattaccaaaaaaactctatctctttcaacaaaatcataaaattaccaacaactca 28972665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 26529367 - 26529302
Alignment:
Q  78 tttttgtaattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaa 143  Q
    ||||| ||||| ||| || |||||| |||||||| ||| |||||||||||||| ||| ||||||||    
T  26529367 tttttttaattaagtctatttttttcgtaaaatatttacccaaaaatctccaattccatcaacaaa 26529302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 37523 - 37654
Alignment:
Q  8 atggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaa 107  Q
    |||||||| ||||||||||| ||||||||||  | ||||||| |||||||| |||  ||||| ||||  | |||| | ||| | | ||||||||||||||    
T  37523 atggaaaattacatgtgttatgttgagttgaaaacatatatgattattagaaattcaaaaataatgtggcatttttttatttactctaattttttggtaa 37622  T
Q  108 aataattagccaaaaatctccaactccttcaa 139  Q
    || | ||| |||||||| || |||||||||||    
T  37623 aacatttaaccaaaaatttctaactccttcaa 37654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 161256 - 161125
Alignment:
Q  8 atggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgtatctttttgtaattgagtgtaattttttggtaa 107  Q
    |||||||| ||||||||||| ||||||||||  | ||||||| |||||||| |||  ||||| ||||  | |||| | ||| | | ||||||||||||||    
T  161256 atggaaaattacatgtgttatgttgagttgaaaacatatatgattattagaaattcaaaaataatgtggcatttttttatttactctaattttttggtaa 161157  T
Q  108 aataattagccaaaaatctccaactccttcaa 139  Q
    || | ||| |||||||| || |||||||||||    
T  161156 aacatttaaccaaaaatttctaactccttcaa 161125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2049 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold2049
Description:

Target: scaffold2049; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 687 - 638
Alignment:
Q  94 taattttttggtaaaataattagccaaaaatctccaactccttcaacaaa 143  Q
    |||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  687 taattttttggtaaaataattatccaaaaatcttcaactctttcaacaaa 638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 95189 - 95140
Alignment:
Q  94 taattttttggtaaaataattagccaaaaatctccaactccttcaacaaa 143  Q
    |||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  95189 taattttttggtaaaataattatccaaaaatcttcaactctttcaacaaa 95140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 49847 - 49778
Alignment:
Q  99 ttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactcatt 168  Q
    ||||||||  ||||||| |||| ||| |||||||| ||||||||| |||| |||| ||||||||||||||    
T  49847 ttttggtagcataattacccaacaatttccaactcattcaacaaattcataaaattaccagcaactcatt 49778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 12296 - 12434
Alignment:
Q  9 tggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt-atctttttgtaattgagtgtaattttttggtaa 107  Q
    ||||||| ||||||||||| | |||| |||  ||||| |||||||||||| ||| ||||||  ||| || ||||| ||||| ||| || ||||| |||||    
T  12296 tggaaaattacatgtgttatgctgagctgagaaaatacatgtttattagaaatt-taaaattttgtgatgttttt-taattaagtctactttttgggtaa 12393  T
Q  108 aataattagccaaaaatctccaactccttcaacaaactcat 148  Q
    ||||||    ||||||||||||||||||| || ||||||||    
T  12394 aataatgtctcaaaaatctccaactccttgaagaaactcat 12434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 2890 - 2955
Alignment:
Q  9 tggaaaaatacatgtgttaggttgagttgacgaaatatatgtttattagacattataaaatgatgt 74  Q
    ||||||||| ||||||||| ||||||||| | || || |||| ||||||||||| |||||| ||||    
T  2890 tggaaaaatgcatgtgttatgttgagttgtcaaagtacatgtgtattagacattttaaaataatgt 2955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 3666 - 3726
Alignment:
Q  85 aattgagtgtaattttttggtaaaataattagccaaaaatctccaactccttcaacaaact 145  Q
    |||| ||| |||| ||||| |||| |||||| || |||||| |||||||||||||||||||    
T  3666 aattaagtctaatgttttgataaattaattatcctaaaatccccaactccttcaacaaact 3726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 32868 - 32799
Alignment:
Q  99 ttttggtaaaataattagccaaaaatctccaactccttcaacaaactcatcaaatgaccagcaactcatt 168  Q
    ||||||||  ||||||  |||| ||| |||||||||||||||||| |||| |||| |||||||| |||||    
T  32868 ttttggtagcataattgcccaataatttccaactccttcaacaaattcataaaattaccagcaaatcatt 32799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 1028 - 1089
Alignment:
Q  85 aattgagtgtaattttttggtaaaataattagccaaaaatc-tccaactccttcaacaaact 145  Q
    |||| ||| |||||| ||||||||||||||| ||||||||| || |||||||| ||||||||    
T  1028 aattaagtctaatttattggtaaaataattacccaaaaatcttctaactcctttaacaaact 1089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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