View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8291_low_2 (Length: 402)
Name: NF8291_low_2
Description: NF8291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8291_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 18460085 - 18459709
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnn-ggcgatttccttttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
18460085 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccatttgttttttttggcgatttccttttga |
18459986 |
T |
|
| Q |
117 |
tcacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaac |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| | |||||||| |||||| |
|
|
| T |
18459985 |
tcacgtcatatgatctgtactgaaacgttctggaatttcaaatccggactgcattcatgcgttccggattttgaatttcggatagaaccagtgcagaaac |
18459886 |
T |
|
| Q |
217 |
tgtgttcat-ttttgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtg |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18459885 |
tgtgttcatcttttgactctgcttcgcactgctttcagtcatggttgttcctgttgatgccccacatgatgatccaccttagaatgaacctcctattgtg |
18459786 |
T |
|
| Q |
316 |
ttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
392 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18459785 |
ttgacgcttcttttacttgaagatgcgcatgatgacggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
18459709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 24133438 - 24133346
Alignment:
| Q |
29 |
gttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtca |
124 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| |||| |||||||||||||| |||| |
|
|
| T |
24133438 |
gttaacatcatcattttcgactgaattcaaaggtaatgtgtat---ataaaccttccctcattcgatttctaggcgctttccttttgatcatgtca |
24133346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 6162364 - 6162002
Alignment:
| Q |
19 |
atcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatc |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| | ||| ||||||| ||||||||| |
|
|
| T |
6162364 |
atcaaggggggttaacatcatcattttcgtctgaatgcaaaggtaatgtgtatataa---acctttccctagtcgatttttaggcgattaacttttgatc |
6162268 |
T |
|
| Q |
119 |
acgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactg |
218 |
Q |
| |
|
|||| |||||| | | || | |||| ||||| | ||||||| |||||||||||||||| |||||||| ||| ||| | ||||||| |||||||| |
|
|
| T |
6162267 |
acgttgtatgatattcattgtactgttccggaatgttaaatccggtctgcattcatgcgttctggatttcggattccggagagcaccagtgcagaaactg |
6162168 |
T |
|
| Q |
219 |
tgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgtt |
317 |
Q |
| |
|
|||||||||| ||||||| ||||||||| |||||||||| |||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6162167 |
tgttcattttctgactctacttcgcactgttttcagtcatggttgttcctgttgatcccctaaatgatgatccacctcagaatgaacctcctattgtgtt |
6162068 |
T |
|
| Q |
318 |
gccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccacc |
383 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6162067 |
gctgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgagaatcccccaccacc |
6162002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 52972762 - 52972390
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttccccc-attcgnnnnnnnggcgatttccttttga |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||| |||||| |
|
|
| T |
52972762 |
catcaaggggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtgtataa---accttccccccattcgttttttaggcgatttctttttga |
52972666 |
T |
|
| Q |
117 |
tcacgtcatatgatctatactgaa-acgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaa |
215 |
Q |
| |
|
|||||||||||||| | |||| | | |||| ||| | | ||||| | |||| ||||||||||||||||||| ||| | ||||| |||| | ||||| |
|
|
| T |
52972665 |
tcacgtcatatgatttgtactctacatgttc-ggactgtaaaatctggactggattcatgcgttccggattttgaaatctggactgcaccaatacagaaa |
52972567 |
T |
|
| Q |
216 |
ctgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgt |
314 |
Q |
| |
|
||||||||||||| ||||| || | ||||| ||| ||| | ||||||| ||||||||||| ||| |||||||||| ||| ||||| ||||| ||| |
|
|
| T |
52972566 |
ctgtgttcattttctgactatgtct-gcactgtttacagatatggttgttttggttgatgccccaaatgttgatccacctgagattgaacatcctaatgt |
52972468 |
T |
|
| Q |
315 |
gttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
392 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
52972467 |
gttgtctcttcttttacttgaagatgcgcatgattccggtaatgccaaatccgagaatcccccatcaccgccaccaaa |
52972390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 54586320 - 54586689
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| | ||| |||||||| ||| ||||||||||||| |
|
|
| T |
54586320 |
catcaaggggggttaacatcatcattttcgtctgaatgcaaaggtagtgtgtatataaaat---ttctcccattcgttttttaggcaatttccttttgat |
54586416 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaact |
217 |
Q |
| |
|
||||||||| ||||| ||||| | || | || | || || | ||||||||||| ||| |||||| | | | | |||| |||||| | ||| | |
|
|
| T |
54586417 |
cacgtcatacgatctgtactggatttatccgaaaaataaattcgggactgcattcatatgtttaggatttagtaatccgaacaacaccagtacaaaaatt |
54586516 |
T |
|
| Q |
218 |
gtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgt |
316 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||| | ||||||||| ||||||||||| ||||||||||| || ||| ||||| || ||| |||| |
|
|
| T |
54586517 |
atgttcattttctgactctgcttcgcattgttttcagttatggttgttccggttgatgccccaaatgatgatccagctgagattgaacatcatatcgtgt |
54586616 |
T |
|
| Q |
317 |
tgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccacc |
389 |
Q |
| |
|
||||| |||||||||||||||||| |||| |||| |||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
54586617 |
tgccggttcttttacttgaagatgtgcataattcgggaaatgccaaatccgagaagcccccaccaccaccacc |
54586689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 6e-81; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 23710848 - 23710480
Alignment:
| Q |
19 |
atcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatc |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
23710848 |
atcaaggggggttaacatcatcattttcgtctgaatgcaaaggtaatgtgtatataa---accttcccccattcgttttttaggcgatttccttttgatc |
23710752 |
T |
|
| Q |
119 |
acgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactg |
218 |
Q |
| |
|
|||||||||||| | ||||| ||||||| |||| | |||| || |||||||||||||||||||||||||||||| | ||| |||||| | ||||| |
|
|
| T |
23710751 |
acgtcatatgatatgtactgtaacgttccagaatatgaaattcggactgcattcatgcgttccggatttcgaattctagactgcaccagtacataaacta |
23710652 |
T |
|
| Q |
219 |
tgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgtt |
317 |
Q |
| |
|
|||||||||| ||||| ||| | |||| |||| || | ||||||| | ||||||||||| |||||||||||||| | | |||||||| |||| |||| |
|
|
| T |
23710651 |
tgttcattttctgactatgcatgacactgtttttagatatggttgtttcggttgatgccccaaatgatgatccacctgaaattgaacctcatattatgtt |
23710552 |
T |
|
| Q |
318 |
gccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccacc |
389 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| ||||||||||| | |||||||||||||| |||||| |
|
|
| T |
23710551 |
gccgcttcttttacttgaagatgtgtatgattccgggaatgccaaatctgagaatcccccaccactaccacc |
23710480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 753988 - 754337
Alignment:
| Q |
13 |
atggacatcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttcctt |
112 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
753988 |
atggccatcaaggggggttgacatcatcatttttgactgaatgcaaagataatgtgtatataa---accttcccccattcgttttttaggcgatttcctt |
754084 |
T |
|
| Q |
113 |
ttgatcacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtag |
212 |
Q |
| |
|
|||||||| ||||||||||| ||||| | ||||| |||| | ||||||| |||||||||||||||||| ||||| ||| | || ||||| || |
|
|
| T |
754085 |
ttgatcacttcatatgatctgtactgtaccgttccagaatatgaaatccggactgcattcatgcgttccagattttgaaatccagagtgcaccagcacag |
754184 |
T |
|
| Q |
213 |
aaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctat |
311 |
Q |
| |
|
|||||||||||||||| | ||| ||| | || | |||| || | ||||||||| ||||||||||| ||| |||||||||| ||| ||||||| |||| |
|
|
| T |
754185 |
aaactgtgttcattttctaactatgcctgtcaatgtttttagatatggttgttccggttgatgccccaaatgctgatccacctaagattgaaccttctat |
754284 |
T |
|
| Q |
312 |
tgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaat |
364 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
754285 |
tgtgttgctgcttcttttacttgaagatgcacatgattccgggaatgccaaat |
754337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 9174034 - 9173677
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||||||| |
|
|
| T |
9174034 |
catcaaagggggttaacatcatcatttttgactgaatgcaaaggtaatgtgtatataa---accttcccccattcgttttttaggagattttcttttgat |
9173938 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaact |
217 |
Q |
| |
|
||||||||||||||| |||| | || || ||| ||| |||||||||||||||||||| || | ||| |||||| ||||||| |
|
|
| T |
9173937 |
cacgtcatatgatctgtactctaccggtccgga--------------ctggattcatgcgttccggatttcaaaatccagactgcaccagtacagaaact |
9173852 |
T |
|
| Q |
218 |
gtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgt |
316 |
Q |
| |
|
|||||||||| ||||| ||| | ||||| ||||||| | ||||| ||| ||||| |||| ||| |||||||||| ||| ||||| ||||| ||||| |
|
|
| T |
9173851 |
atgttcattttctgactatgcct-gcactgttttcagatatggttgctccggttgatatcccaaatgttgatccacctgagattgaacatcctaatgtgt |
9173753 |
T |
|
| Q |
317 |
tgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
392 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9173752 |
tgccacttcttttacttgaagatacgcatgattccggtaatgccaaatccgagaatcccccaccaccaccaccaaa |
9173677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 14822461 - 14822616
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||| | || |||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| || |
|
|
| T |
14822461 |
catcaaggggggttaacatcatcatttttgtctaaatgtaaaggtaatgtgtat---ataaaccttcccccattcgaattttaagcgatttccttttaat |
14822557 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgc |
176 |
Q |
| |
|
||| |||||||||| ||||| ||| ||| |||| | ||||||| ||||||||||||| |
|
|
| T |
14822558 |
cacatcatatgatccgtactggaacattccggaaaattaaatccggactgcattcatgc |
14822616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 9710572 - 9710464
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
9710572 |
catcaaggggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatat----aaccttcccccattcattttttaggcaattttcttttgat |
9710477 |
T |
|
| Q |
118 |
cacgtcatatgat |
130 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
9710476 |
catgtcatatgat |
9710464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 38619165 - 38619536
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| | ||||||||||||||||| |
|
|
| T |
38619165 |
catcaaggggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa---acctttcccaatttgttttttaggcgatttccttttgat |
38619261 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaact |
217 |
Q |
| |
|
||||||||||||||| ||||| | | ||| ||| | | |||||| |||| ||||||||||| |||||||||| | | ||| |||||| ||||||| |
|
|
| T |
38619262 |
cacgtcatatgatctgtactgtacctttccggactatgcaatccggactggattcatgcgttatggatttcgaaatctagactgcaccagtacagaaact |
38619361 |
T |
|
| Q |
218 |
gtgttcattttt-gactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgt |
316 |
Q |
| |
|
|||||||||||| |||| ||| | | ||| ||||||| | ||||||||| |||||||| || ||| |||||||||| ||| ||||||||||| || || |
|
|
| T |
38619362 |
gtgttcattttttgactatgcct-gtactgttttcagatatggttgttccgattgatgcctcaaatgttgatccacctgagattgaacctcctaatgcgt |
38619460 |
T |
|
| Q |
317 |
tgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
392 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38619461 |
tgccgcttcttttacttgaagacgcgcatgattccggtaatgccaaatccgagaatcccccaccaccaccaccaaa |
38619536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 17312844 - 17312488
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |
|
|
| T |
17312844 |
catcaaagggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa---accttctcccattcgttttttaggcgatttccttttgat |
17312748 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaact |
217 |
Q |
| |
|
||||||||||||| | |||| | || || || | | |||||||||||| |||| | ||| | ||||||||| | |||| |||||| ||||||| |
|
|
| T |
17312747 |
cacgtcatatgatttgtactctaccggtccagactctgaaatccgaactgggttcacgtgtttcagatttcgaaatccggactgcaccagtacagaaact |
17312648 |
T |
|
| Q |
218 |
gtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgt |
316 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||||| | |||||||| ||||||||||| ||| |||||||||| ||| ||||| ||||| ||||| |
|
|
| T |
17312647 |
gtgttcattttctgactatgctt-gcactgttttcagatatggttgttctggttgatgccccaaatgttgatccacctgagattgaacatcctaatgtgt |
17312549 |
T |
|
| Q |
317 |
tgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatccccc |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
17312548 |
tgccgcttcttttacttgaagatgcgcatgattccggtaatgccaaatccgagaaaccccc |
17312488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 9635351 - 9635722
Alignment:
| Q |
18 |
catcaagggaggttaaca--tcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttg |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||| |||||||| ||| | |||| |||||||||| |
|
|
| T |
9635351 |
catcaagggaggttaacacatcatcattttcatctgagtgcaaagataatgtgtatataa---accttcccttatttgaattttaggcgctttccttttg |
9635447 |
T |
|
| Q |
116 |
atcacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaa |
215 |
Q |
| |
|
||||||||||||||||| ||||| | | | | || | ||||| | ||||||||||||| || | ||||| | | | |||| |||||| | ||| |
|
|
| T |
9635448 |
atcacgtcatatgatctgtactggagcaatacgaaaaataaaatctggactgcattcatgcatttcagattttttaatccgaacaacaccagtacaaaaa |
9635547 |
T |
|
| Q |
216 |
ctgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgt |
314 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||| |||||||| | |||||||||| ||||||||||| |||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
9635548 |
ctgtgctcattttctgagtctgcttcgcactgttttcagttatggttgttcctgttgatgccccaaatgatgatccacctgagattgatcctcctattgt |
9635647 |
T |
|
| Q |
315 |
gttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccacc |
389 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9635648 |
gttgccggttcttttacttgaagatgtgcatgattccgaaaatgccaaatccgagaatcccccaccaccaccacc |
9635722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 19991679 - 19991633
Alignment:
| Q |
29 |
gttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa |
75 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19991679 |
gttaacatcatcattttcgaatgaatgcaaaggtaatgtgtatataa |
19991633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 26262693 - 26262739
Alignment:
| Q |
29 |
gttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa |
75 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
26262693 |
gttaacaacatcatttttgtctgaatgcaaaggtaatgtgtatataa |
26262739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 41257665 - 41257304
Alignment:
| Q |
28 |
ggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41257665 |
ggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa---acctttccccattcgttttttaggcgatttccttttgatcacgtcatat |
41257569 |
T |
|
| Q |
128 |
gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt |
227 |
Q |
| |
|
||| | ||||| | | || ||| | | |||| | | || |||||||||||| |||||||||| | |||| |||||| |||||||||||| |||| |
|
|
| T |
41257568 |
gatatgtactgtaccttttcggactatgcaatctggattggattcatgcgttctggatttcgaaatccggactgcaccagtacagaaactgtgtttattt |
41257469 |
T |
|
| Q |
228 |
t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttct |
326 |
Q |
| |
|
| ||||| ||| | ||||| ||||||| | ||||||||| ||||||||||| ||| |||||||||| ||| ||||||||||| || |||||||||||| |
|
|
| T |
41257468 |
tctgactatgcct-gcactgttttcagatatggttgttccgattgatgccccaaatgttgatccacctgagattgaacctcctaatgcgttgccgcttct |
41257370 |
T |
|
| Q |
327 |
tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41257369 |
tttacttgaagatgcgcatgattccggtaatgccaaatccgagaatcccccaccaccaccaccaaa |
41257304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 19215449 - 19215819
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |||| |||||||| |
|
|
| T |
19215449 |
catcaaggggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa---accttcccccattagttttttaggcaattttcttttgat |
19215545 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaact |
217 |
Q |
| |
|
||||||||||||||| || || | | ||| ||| | | |||||| |||| |||||||||||||||| |||||| | || || | |||| ||||||| |
|
|
| T |
19215546 |
cacgtcatatgatctgtattgtacctttcaggactatgcaatccggactggattcatgcgttccggagttcgaaatctgaactgcatcagtacagaaact |
19215645 |
T |
|
| Q |
218 |
gtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgt |
316 |
Q |
| |
|
|||| |||||| ||||| ||| | ||||| ||||||| ||||||||| ||||||||||| ||| |||||||||| ||| |||||||| || || | |
|
|
| T |
19215646 |
gtgt-cattttctgactatgcct-gcactgttttcagatgtggttgttccggttgatgccccaaatgttgatccacctgagactgaacctcttaatgcat |
19215743 |
T |
|
| Q |
317 |
tgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19215744 |
tgccgcttcttttacttgaagatgcgcatgattccggtaatgccaaatccgagaatcccccaccaccaccaccaaa |
19215819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 202 - 388
Target Start/End: Original strand, 15889269 - 15889456
Alignment:
| Q |
202 |
aaccagtgtagaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaat |
300 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||| |||| ||||| |||||||| | ||||||||| ||||||||||| ||||||||||| || ||| | |
|
|
| T |
15889269 |
aaccagtacagaaactatgttcattttctgactaagcttggcactgttttcagttatggttgttccggttgatgccccaaatgatgatccagctgagatt |
15889368 |
T |
|
| Q |
301 |
gaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccac |
388 |
Q |
| |
|
|||| |||||| | |||| | |||||||||||||||||| ||||||||| ||| | |||||| || |||||||||||||| ||||| |
|
|
| T |
15889369 |
gaacatcctatcgctttgctggttcttttacttgaagatgtgcatgattcttgaatttccaaattcgagaatcccccaccactaccac |
15889456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 8e-74; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 50515252 - 50515623
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||| |
|
|
| T |
50515252 |
catcaaggggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa---acctttccccatttgttttttaggcgatttccttttgat |
50515348 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaact |
217 |
Q |
| |
|
||||||||||||||| ||||| | | ||| ||| | | |||||| |||| |||||||| ||||||| |||||| | |||| | |||||| | ||||| |
|
|
| T |
50515349 |
cacgtcatatgatctgtactgtacctttccggactatgcaatccggactggattcatgctttccggaattcgaaatccggactacaccagtacaaaaact |
50515448 |
T |
|
| Q |
218 |
gtgttcattttt-gactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgt |
316 |
Q |
| |
|
|||||||||||| |||| ||| | ||||| |||||| | ||||||||| ||||| ||||| ||| |||||||||| ||| ||||||| | | || | |
|
|
| T |
50515449 |
gtgttcattttttgactatgcat-gcactgttttcatatatggttgttccggttgataccccaaatgttgatccacctgagattgaaccttcaaatgcat |
50515547 |
T |
|
| Q |
317 |
tgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
50515548 |
tgccgcttcttttacttgaagatgcgcatgattccggtaatgccaaatccgagaatcccccaccaacaccaccaaa |
50515623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 44713415 - 44713048
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
44713415 |
catcaaggggggttaacatcatcattttcggttgaatgcaaaggtaatgtgtat---ataaacctttccccattcgttttttaggcgatttccttttgat |
44713319 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaact |
217 |
Q |
| |
|
||||||||||||||| ||||| | | ||| ||| | | |||| | ||| |||||||| ||||||| || ||| || |||| |||||| | ||||| |
|
|
| T |
44713318 |
cacgtcatatgatctgtactgtacctttccggactatgcaatctggactagattcatgcattccggagttagaaattaggactgcaccagtacaaaaact |
44713219 |
T |
|
| Q |
218 |
gtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgt |
316 |
Q |
| |
|
||||||||||| ||||| ||| | ||| | ||||||| | ||||||||| ||||||||||| ||| |||||||| | ||| | ||||||||| ||||| |
|
|
| T |
44713218 |
gtgttcattttctgactatgcct-gcattgttttcagatatggttgttccggttgatgccccaaatgttgatccacatgagattcaacctcctaatgtgt |
44713120 |
T |
|
| Q |
317 |
tgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccac |
388 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||| ||| ||||||| ||| | |||||||||||||||||||| |
|
|
| T |
44713119 |
tgccacttattttacttgaagatgtgcatgattacggtaatgccatatctgagaatcccccaccaccaccac |
44713048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 45910727 - 45910454
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||| || |||||||||||||| |
|
|
| T |
45910727 |
catcaaggggggttagcatcatcatttttgactgaatgcaaaggtaatgtatatataa---acctttccccattcattttttaggtgatttccttttgat |
45910631 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaact |
217 |
Q |
| |
|
|| |||||||||||| ||||| | | ||| ||| | | |||||| |||| |||||||||||| ||| |||||| || |||| |||||| ||||||| |
|
|
| T |
45910630 |
catgtcatatgatctgtactgtacctttccggactatgcaatccggactggattcatgcgttctggagttcgaaattcggactgcaccagtacagaaact |
45910531 |
T |
|
| Q |
218 |
gtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacct |
294 |
Q |
| |
|
||||||||||| ||||| ||| | ||||| ||||||| | ||||||||| || |||||||| ||| |||||||||| |
|
|
| T |
45910530 |
gtgttcattttctgactatgcct-gcactgttttcagatatggttgttccggttaatgccccaaatgttgatccacct |
45910454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 16768066 - 16768021
Alignment:
| Q |
30 |
ttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa |
75 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16768066 |
ttaacatcatcattctcgactgaatgcaaaggtaatgtgtatataa |
16768021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 10548339 - 10548379
Alignment:
| Q |
29 |
gttaacatcatcattttcgactgaatgcaaaggtaatgtgt |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10548339 |
gttaacatcatcattttcgactgaatgcaaaggtaatgtgt |
10548379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 6851438 - 6851381
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa |
75 |
Q |
| |
|
||||||||| || |||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
6851438 |
catcaaggggtgtaaacatcatcattttcgtctgactgcaaaggtaatgtgtatataa |
6851381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 29 - 392
Target Start/End: Complemental strand, 13851022 - 13850662
Alignment:
| Q |
29 |
gttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatatg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13851022 |
gttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa--acctttcccccattcgttttta-ggcgatttccttttgatcacgtcatatg |
13850926 |
T |
|
| Q |
129 |
atctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcatttt |
228 |
Q |
| |
|
|| | ||||| | | ||| ||| | | |||||| |||| ||||||| ||||||| |||| | | |||| |||||| |||||||||||||||||| |
|
|
| T |
13850925 |
atttgtactgtacctttccggactatgcaatccgcactggattcatggtttccggagttcgtaatccggactgcaccagtacagaaactgtgttcatttt |
13850826 |
T |
|
| Q |
229 |
-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgttgccgcttctt |
327 |
Q |
| |
|
||||| ||| | ||| | |||| || | ||||||||| ||||||||||| ||| |||||||||| ||| | ||||||||| |||||||||||||||| |
|
|
| T |
13850825 |
ctgactatgcat-gcattgtttttagatatggttgttccagttgatgccccaaatgttgatccacctgagatttaacctcctaatgtgttgccgcttctt |
13850727 |
T |
|
| Q |
328 |
ttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
392 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13850726 |
ttacttgaagatgcgcatgatttcggtaatgccaaatccgagaatcccccaccaccaccaccaaa |
13850662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 25761158 - 25761529
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||| |||| |||||||| |
|
|
| T |
25761158 |
catcaaggggggttaacatcatcatttttgactgaatgcaaaggtaatgtgtatataa---acctttccccattgattttttaggctattttcttttgat |
25761254 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaact |
217 |
Q |
| |
|
||||||||||||| | ||||| | | ||| ||| | | ||||| |||| |||||||||||||||| |||||| | |||| |||||| | ||||| |
|
|
| T |
25761255 |
cacgtcatatgatatgtactgtacctttccggactatgcaatccagactggattcatgcgttccggagttcgaaatccggactgcaccagtacaaaaact |
25761354 |
T |
|
| Q |
218 |
gtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgt |
316 |
Q |
| |
|
||||||||||| ||||| ||| | ||||| ||||||| | ||||||||| ||||||||||| ||| |||||||||| ||| ||||||||||| || || |
|
|
| T |
25761355 |
gtgttcattttctgactatgcct-gcactgttttcagatatggttgttccggttgatgccccaaatgttgatccacctgagattgaacctcctaatgcgt |
25761453 |
T |
|
| Q |
317 |
tgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
392 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| ||||||||||| | | ||||||||||||||| |||||| |
|
|
| T |
25761454 |
ttccgcttcttttacttgaagatgcgcatggttccggtaatgccaaatctgagtatcccccaccaccacgaccaaa |
25761529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 38965566 - 38965934
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||| ||||||| |||||||| |||||||| |
|
|
| T |
38965566 |
catcaagggggattaacatcatcattttcgtctgaattcaaatgtaatgtgtatataa---accttcctccattcgttttttaggcgattttcttttgat |
38965662 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaact |
217 |
Q |
| |
|
|| |||||||||| | |||||| |||| |||| || |||| ||| ||||||||| ||| |||||||||| | |||| | |||||| ||||||| |
|
|
| T |
38965663 |
catgtcatatgatatgtactgact-gttccggaaaacgaattccggactacattcatgcattctggatttcgaaatccggactacaccagtacagaaact |
38965761 |
T |
|
| Q |
218 |
gtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgt |
316 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||| | | ||||||||| ||||||||||| ||||||||||| || ||| ||||| |||||| ||| |
|
|
| T |
38965762 |
gtgttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatgatccagctgagattgaacatcctatcatgt |
38965861 |
T |
|
| Q |
317 |
tgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccacc |
389 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
38965862 |
tgccggttcttttacttgaagatgtgcatgattccagaattgccaaatccgagaatcccccactaccaccacc |
38965934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 20236491 - 20236122
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| | ||||||||||||||||| |
|
|
| T |
20236491 |
catcaaggggggttaacatcatcattttcgactgaatgctaaggtaatgtgtatataa---accttccccgatttgttttta-ggcgatttccttttgat |
20236396 |
T |
|
| Q |
118 |
cacgtcatatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaact |
217 |
Q |
| |
|
||||||||||||| | || | | || ||| ||| |||||||||||| ||||||||||||||||||||||| | |||| |||||| | ||| | |
|
|
| T |
20236395 |
cacgtcatatgatatgtaatcttcagatccggactttgaaatccgaactggattcatgcgttccggatttcgaaatccggactgcaccagtacataaatt |
20236296 |
T |
|
| Q |
218 |
gtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcctattgtgt |
316 |
Q |
| |
|
|||||||||| ||||| ||| | ||||| ||||||| | | ||| ||| ||||||||||| ||| | ||||||| | | || | |||||| ||||| |
|
|
| T |
20236295 |
atgttcattttctgactatgcct-gcactgttttcagatatg-ttgctccggttgatgccccaaatgttaatccaccagatattggatctcctaatgtgt |
20236198 |
T |
|
| Q |
317 |
tgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
392 |
Q |
| |
|
|| |||||||||||||||||||||| || ||||||| |||||||||| || |||||||||||||||| ||||||| |
|
|
| T |
20236197 |
cgcggcttcttttacttgaagatgcgtattattccggtaatgccaaatacgagaatcccccaccaccatcaccaaa |
20236122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 211 - 392
Target Start/End: Complemental strand, 34834024 - 34833843
Alignment:
| Q |
211 |
agaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgatgatccacctcagaatgaacctcct |
309 |
Q |
| |
|
|||||||||||||||||| ||||| | | | ||||| ||||||| | ||||||||| ||||||||||| || ||||| |||| ||| |||||||||| |
|
|
| T |
34834024 |
agaaactgtgttcattttctgactatacat-gcactgttttcagatatggttgttccgattgatgccccaaattttgatctacctaagattgaacctcct |
34833926 |
T |
|
| Q |
310 |
attgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaccaccaaa |
392 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34833925 |
aatgcgttgctgcttcttttacttgaagatgcgcatgattccggtaatgccaaatccgagaatcccccaccaccaccaccaaa |
34833843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 23352307 - 23352198
Alignment:
| Q |
18 |
catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
23352307 |
catcaagggcggttaacatcatcattttcgactgaatgcaaaggtaatgtgtat---ataaacctttccccattcgttttttaggcaatttccttttgat |
23352211 |
T |
|
| Q |
118 |
cacgtcatatgat |
130 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23352210 |
cacgtcatatgat |
23352198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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