View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8292_high_1 (Length: 712)
Name: NF8292_high_1
Description: NF8292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8292_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 40 - 557
Target Start/End: Original strand, 40424242 - 40424757
Alignment:
| Q |
40 |
atgaacgagtcaaagattaaatcatattggtagataacggcaacggaatctgaccaaaaaatagttgcgaaaaggacaattaatgtacagaggatgtgtg |
139 |
Q |
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| T |
40424242 |
atgaacgagtcaaagattaaatcatattggtagataacggcaacggaatctgaccaaaa--tagttccgaaaaggacaattaatgtacagaggatgtgtg |
40424339 |
T |
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| Q |
140 |
ta--cgtaagttgctagatatgttttcccgtacagccgcccaagacaatgcaatgttctacgatccagacggtcttgttcttgttgtcatataatccaat |
237 |
Q |
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| T |
40424340 |
tatacgtaagttgctagatatgttttcccgtacagccgcccaagacaatgcaatgttctacgatccagacggtcttgttcttgttgtcatataatccaat |
40424439 |
T |
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| Q |
238 |
atacctgcggagtaataataaaaataatatactatacagattcctttcatagtctaannnnnnnnnnnnnnnncaaaagactaatatatacatacata-- |
335 |
Q |
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| T |
40424440 |
atacctgcggagtaataataa---taatatactatacagattcctttcatagtctaattttttcttttcttttcaaaagactaatatatacatacataca |
40424536 |
T |
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| Q |
336 |
--gacacagccaactcgttcttgtaagtttatcatcttaaacatttcgctcttataatcctcataattggggatatatggactatcataaagttatatta |
433 |
Q |
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| T |
40424537 |
tagacacagccaactcgttcttgtaagtttatcatcttaaacatttcgctcttataatcctcataattggggatatatggactatcataaaattatatta |
40424636 |
T |
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| Q |
434 |
atctcggtccatatttcgtatgtattccagcttgttcttgatctattctccnnnnnnnnnnnnnnata-----attaaaacttgatgttcaattcaaaat |
528 |
Q |
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| T |
40424637 |
atctcg--------ttcgtatgtattccagcttgttcttgacccattctccccttttttttttttttttttttattaaaacttgatattcaattcaaaat |
40424728 |
T |
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| Q |
529 |
cgactaatttgagagatcaatatcactgt |
557 |
Q |
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| T |
40424729 |
cgactaatttgaaagatcaatatcactgt |
40424757 |
T |
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