View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8292_high_4 (Length: 415)
Name: NF8292_high_4
Description: NF8292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8292_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 9567577 - 9567959
Alignment:
| Q |
19 |
atccatacattttaacactattgaactcaaatggaactttacaagtttttgcacaatcttctagcttttttcctacaatatcaagttttccacctctagc |
118 |
Q |
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| T |
9567577 |
atccatacattttaacactattgaactcaaatggaactttacaagtttttgcacaatcttctagcttttttcctacaatatcaagttttccacctctagc |
9567676 |
T |
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| Q |
119 |
atgaaacgattgcgagtcatcgatacctgttacacgaatgaacggaggtccgccgggtttatgcttgagagcatgcaaaagtaacatccactgtgatcct |
218 |
Q |
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| T |
9567677 |
atgaaacgattgcgagtcatcgatacctgttacacgaatgaacggaggtccgccgggtttatgcttgagagcatgcaaaagtaacatccactgtgatcct |
9567776 |
T |
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| Q |
219 |
tgtgcaatttggaagtcaattatgtgaattcttgattcatttttcatttcttcacaaatgacagcattggatgatatataagcaaactgaaaatatgggc |
318 |
Q |
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| T |
9567777 |
tgtgcaatttggaagtcaattatgtgaattcttgattcattttgcatttcttcacaaatgacagcattggatgatatataagcaaactgaaaatatgggc |
9567876 |
T |
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| Q |
319 |
aaatctgatacaaaatgtgcatagcacttatcaactctatgcttgttggttcttcacatttcaaggctttataaattgcactc |
401 |
Q |
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| T |
9567877 |
aaatctgatacaaaatgtgcatagcactcatcaactctatgcttgttggttcttcacatttcaaggctttataaattgcactc |
9567959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 210 - 382
Target Start/End: Original strand, 55913614 - 55913786
Alignment:
| Q |
210 |
tgtgatccttgtgcaatttggaagtcaattatgtgaattcttgattcatttttcatttcttcacaaatgacagcattggatgatatataagcaaactgaa |
309 |
Q |
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| T |
55913614 |
tgtgttccctgtgcgatttggaaatcaattatatgaatcctggattcatttgccattgcttcagaaataacagcatttgcagatatgtatgcaaacttaa |
55913713 |
T |
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| Q |
310 |
aatatgggcaaatctgatacaaaatgtgcatagcacttatcaactctatgcttgttggttcttcacatttcaa |
382 |
Q |
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| T |
55913714 |
aatatggacaaatctgatacagcatgtgcatgtaagtcattagctctttgctcgttggttgttcacatttcaa |
55913786 |
T |
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