View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8292_low_2 (Length: 682)
Name: NF8292_low_2
Description: NF8292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8292_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 7 - 665
Target Start/End: Complemental strand, 3324375 - 3323719
Alignment:
| Q |
7 |
ttatgcacatgacaataaattaaacatcggcacaaacgtcaaacacgacactgatactaacatgcagactttagtaataatttgagaaaatagaactgat |
106 |
Q |
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| T |
3324375 |
ttatgcacatgacaataaattaaatatcggcacaaacgtcaaacacgacactgatactaacatgtagacttcagtaataatttgagaaaatagaactgat |
3324276 |
T |
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| Q |
107 |
tatacatgtaaaagcgttgtgtcggtgttggaacacttgtcgggcatgtgatatgcttttaatctgaagtgtcgaagctatttttgcatttgaagcagac |
206 |
Q |
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| T |
3324275 |
ta--catgtaacggcgttgtgtcggtgttggaacacttgtcggacatgtgatatacttttaatctgaagtgtcgaagctatttttgtatttgaagcagac |
3324178 |
T |
|
| Q |
207 |
tgaagggcttctgtttgaggaaaaaatattatcctgctatgaattcattgaaaagtttattggatgcatatcagatcatcttgaagaattaattaagcag |
306 |
Q |
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| T |
3324177 |
tgaagggcttctgtttgaggaaaaaatattatcctgctatgaattcattgaaaagtttattggatgcatatcagatcatcttgaagaattaattaagcag |
3324078 |
T |
|
| Q |
307 |
aggtgtgcttttcaattctcaaacatgaaaaaatagcatgataatcattgttttgaatagcaactaaaaaatcatacctcttcttatttatataatatga |
406 |
Q |
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| T |
3324077 |
aggtgtgcttttcaattctcaaacatgaaaaaatagcatgataatcattgttttgaatagcaactcaaaaatcaaacctcttcttatttatataatatga |
3323978 |
T |
|
| Q |
407 |
actaatttcttatatagtgaatgccctgaggaatgcaaggaagctataccatcattgatgtatgctgcagccagaatttctgacctaccagaattgcgtg |
506 |
Q |
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| T |
3323977 |
actaatttcttatatagtgaatgccctgaggaatgcaaggaagctataccatcattgatgtatgctgcagcaagaatttctgacctaccagaattgcgtg |
3323878 |
T |
|
| Q |
507 |
accttagaactttgtttacagaaaaatatggaaattctcttgaaccatacataaataaagaggtaaaaccaatgatccacccttgtagagtatatttatt |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3323877 |
accttagaactttgtttacagaaaaatatggaaattctcttgaaccatacataaataaagaggtaaaaccaatgatccacccttgtagagtatatttatt |
3323778 |
T |
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| Q |
607 |
attattgtttctaaggattgattaaataattgttgttccttagtttgttgagaagttga |
665 |
Q |
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| T |
3323777 |
attattgtttctaaggattgattaaataattgttgttccttagtttgttgagaagttga |
3323719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 8013924 - 8013863
Alignment:
| Q |
46 |
caaacacgacactgatactaacatgcagactttagtaataatttgagaaaatagaactgatt |
107 |
Q |
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| T |
8013924 |
caaacacgacactgatactaacatgtagacactagtaataatttgaaaaaatataagtgatt |
8013863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 1116368 - 1116428
Alignment:
| Q |
48 |
aacacgacactgatactaacatgcagactttagtaataatttgagaaaatagaactgatta |
108 |
Q |
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| T |
1116368 |
aacacaacactgacactaacatgtagacattggtaataatttgagaaaattgaagtgatta |
1116428 |
T |
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