View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8292_low_4 (Length: 449)
Name: NF8292_low_4
Description: NF8292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8292_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 24 - 433
Target Start/End: Original strand, 371244 - 371661
Alignment:
| Q |
24 |
tgttgtgtttttgatgaaatacaatctagctagttcaagtctacccaccaaaccagaaatgataaaaccaagagacacaaataagttatttagatctatc |
123 |
Q |
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| T |
371244 |
tgttgtgtttttgatgaaatacaatctaggtagttcaagtctacccaccaaaccagaaatgataaaaccaagagacacaaataagttatttagatatatc |
371343 |
T |
|
| Q |
124 |
aattcgatcttacccaatc---taattaacacacaacacaaagtatatacatgttgattgacttgagattggaaatgaacattgaa---------attat |
211 |
Q |
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| T |
371344 |
aattcgatcttacccaatcatctaattaacacacaacacaaagtatatacatgttgattgacttgagattggaaatgaacattgaagaataagaaattat |
371443 |
T |
|
| Q |
212 |
atggtgaggttgtgcttaattggtgggtggaatattattatcagcagctttcaaggtcttttcaataagcttacgagcttttctgcttcgaatctcaacc |
311 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
371444 |
atggtgaggttgtgctt----ggtggggggaatattattatcagcagctttcaaggtcttttcaataagcttacgagcttttctgcttcgaatctcaacc |
371539 |
T |
|
| Q |
312 |
ttaacacttgcactcttgtccatctttatgtatggcttctttcctttcttcatcttcaacgttgacttcacctttgactttattgattccaccagatttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
371540 |
ttaacacttgcactcttgtccatctttatgtatggcttctttcctttcttcatcttcaacgttgacttcacctttgactttattgattccaccagatttc |
371639 |
T |
|
| Q |
412 |
caagctgattcgccattcttct |
433 |
Q |
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|||| ||||||||||||||||| |
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| T |
371640 |
caagttgattcgccattcttct |
371661 |
T |
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