View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8292_low_6 (Length: 357)

Name: NF8292_low_6
Description: NF8292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8292_low_6
NF8292_low_6
[»] chr3 (2 HSPs)
chr3 (2-136)||(25393053-25393186)
chr3 (206-309)||(25392885-25392983)
[»] chr5 (9 HSPs)
chr5 (10-96)||(40044613-40044698)
chr5 (10-91)||(27111112-27111192)
chr5 (10-91)||(35449207-35449287)
chr5 (12-91)||(4986554-4986632)
chr5 (53-96)||(10416234-10416276)
chr5 (12-81)||(12290944-12291012)
chr5 (10-91)||(40987786-40987866)
chr5 (10-86)||(33745822-33745897)
chr5 (10-86)||(41061694-41061769)
[»] chr8 (11 HSPs)
chr8 (10-91)||(4267812-4267892)
chr8 (38-91)||(27805006-27805058)
chr8 (27-91)||(10636316-10636379)
chr8 (11-94)||(11863974-11864056)
chr8 (11-90)||(17853875-17853954)
chr8 (10-91)||(1265552-1265632)
chr8 (10-91)||(6345743-6345823)
chr8 (10-91)||(31126840-31126920)
chr8 (10-91)||(37948524-37948604)
chr8 (10-91)||(43619619-43619699)
chr8 (47-91)||(10182827-10182870)
[»] chr4 (11 HSPs)
chr4 (10-91)||(34277406-34277486)
chr4 (21-94)||(47975226-47975298)
chr4 (21-91)||(7612489-7612558)
chr4 (10-92)||(670356-670437)
chr4 (11-91)||(42414129-42414207)
chr4 (10-60)||(23120345-23120395)
chr4 (13-78)||(15544017-15544081)
chr4 (19-80)||(23695507-23695567)
chr4 (13-86)||(24319510-24319582)
chr4 (10-91)||(24574737-24574817)
chr4 (14-91)||(47310427-47310503)
[»] chr1 (4 HSPs)
chr1 (10-91)||(41198077-41198157)
chr1 (12-95)||(11619591-11619673)
chr1 (21-96)||(24615224-24615298)
chr1 (10-91)||(28656024-28656104)
[»] chr7 (2 HSPs)
chr7 (21-92)||(8937355-8937425)
chr7 (10-91)||(1576290-1576370)
[»] chr6 (4 HSPs)
chr6 (10-91)||(30396011-30396091)
chr6 (10-96)||(10483967-10484052)
chr6 (10-91)||(16704944-16705024)
chr6 (10-91)||(7607862-7607942)
[»] chr2 (2 HSPs)
chr2 (11-91)||(21351880-21351959)
chr2 (10-91)||(42295374-42295454)
[»] scaffold0308 (1 HSPs)
scaffold0308 (32-95)||(20392-20454)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 25393186 - 25393053
Alignment:
Q  2 tggtggtgggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtttggataatta 101  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  25393186 tggtggtggaggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatcc-aaaataaaaatcacatgcagtttggtttggataatta 25393088  T
Q  102 ttttnnnnnnnttcgatccgatccaaatatatgcg 136  Q
    ||||       || |||||||||||||||||||||    
T  25393087 ttttaaaaaaatttgatccgatccaaatatatgcg 25393053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 25392983 - 25392885
Alignment:
Q  206 ctttggattatgaaattattagcctaaactgaattaatttctcaacacaccaccttaattcaggttagctaatacttccattccggtcaaacctcttagc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||    
T  25392983 ctttggattatgaaattattagcctaaactgaattaatttctcaacacaccacctt-----aggttagctaatacttccattccggtcaaacctcttagc 25392889  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 40044698 - 40044613
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtttggat 96  Q
    |||||||| ||||||||||||||||| ||||||| | |||| |||||||||||| |||||||||||||||||||||| |||||||||    
T  40044698 ggggtgttcgcggtgcggtttgaatcgattttgaggcaaaatgtcatccgatcc-aaaataaaaatcacatgcggttcggtttggat 40044613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 27111192 - 27111112
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||||||||||| |||| |||||| |||||| |||| ||||||| |||||||||||||||| ||||| ||||    
T  27111192 ggggtgtttgcggtgcggtttggatcagttttgaggtaaaatgtcaaccgatcc-aaaataaaaatcacatacggttcggtt 27111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 35449207 - 35449287
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| | ||||||||||| || | |||||| |||||| |||| ||||||| |||||||||||||||||||||| ||||    
T  35449207 ggggtgttcgtggtgcggtttggattagttttgaggtaaaatgtcaaccgatcc-aaaataaaaatcacatgcggttcggtt 35449287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 4986632 - 4986554
Alignment:
Q  12 ggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||| | ||||||||||||||| |||||||  ||||| ||||| |||| | ||||||||||| |||||||||||||||    
T  4986632 ggtgtttgtggtgcggtttgaatcgattttgagctaaaatgtcattcgat-ctaaaataaaaattacatgcggtttggtt 4986554  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 10416276 - 10416234
Alignment:
Q  53 tcatccgatccaaaaataaaaatcacatgcggtttggtttggat 96  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||    
T  10416276 tcatccgatccaaaa-taaaaattacatgcggtttggtttggat 10416234  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 12290944 - 12291012
Alignment:
Q  12 ggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatg 81  Q
    |||||| ||||| | ||||| ||| ||||||| |||||||||||| ||||||  ||||||||||||||||    
T  12290944 ggtgttcgcggttcagtttgtatcgattttgaggtaaaaagtcattcgatcc-gaaataaaaatcacatg 12291012  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 40987866 - 40987786
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||| ||||||| |||  |||||| || |||| ||| ||||||| |||||||||||||| ||||||| ||||    
T  40987866 ggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatcc-aaaataaaaatcacgtgcggttcggtt 40987786  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 33745822 - 33745897
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtt 86  Q
    |||| ||| ||||||||||||| ||| ||||||| ||||||  ||||| ||| | |||||||||||| |||||||||    
T  33745822 ggggagtttgcggtgcggtttgcatcgattttgaggtaaaatatcatctgattc-aaaataaaaatcgcatgcggtt 33745897  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 41061769 - 41061694
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtt 86  Q
    |||||||| ||||||||||||| |||  |||| | |||||| |||| ||||| | ||||||||||||||||| ||||    
T  41061769 ggggtgttcgcggtgcggtttggatcggttttaaggtaaaatgtcaaccgattc-aaaataaaaatcacatgtggtt 41061694  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 4267892 - 4267812
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||||||||||| ||| ||||||| |||||| |||| ||||||| |||||||||||||||||||||| ||||    
T  4267892 ggggtgttcgcggtgcggtttggatcgattttgaggtaaaatgtcaaccgatcc-aaaataaaaatcacatgcggttcggtt 4267812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 27805006 - 27805058
Alignment:
Q  38 ttttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||| ||||    
T  27805006 ttttgaagtaaaatgtcatccgatcc-aaaataaaaatcacatgcggttcggtt 27805058  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 10636316 - 10636379
Alignment:
Q  27 gtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    ||||||||| ||||||| |||||| ||||||| ||| |||||||||||||||| |||||||||||    
T  10636316 gtttgaatcgattttgaggtaaaatgtcatccaatc-aaaaataaaaatcacacgcggtttggtt 10636379  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 11864056 - 11863974
Alignment:
Q  11 gggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtttgg 94  Q
    ||||||| ||||||||||||| ||   |||||| |||||| ||||  |||||||||| ||||||| |||||||||| |||||||    
T  11864056 gggtgttcgcggtgcggtttggattggttttgaggtaaaatgtcaatcgatccaaaa-taaaaattacatgcggttcggtttgg 11863974  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 17853875 - 17853954
Alignment:
Q  11 gggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggt 90  Q
    ||||||| ||| ||| ||||  ||||||||| |||||||| ||||| |||||| |||  ||||||| |||||||||||||    
T  17853875 gggtgttcgcgatgcagtttagatcaattttaaagtaaaatgtcattcgatccgaaataaaaaatctcatgcggtttggt 17853954  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 1265632 - 1265552
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||| ||||||| |||  |||||| || |||| ||| ||||||| |||||||||||||| ||||||| ||||    
T  1265632 ggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatcc-aaaataaaaatcacgtgcggttcggtt 1265552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 6345823 - 6345743
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||| ||||||| |||  |||||| || |||| ||| ||||||| |||||||||||||| ||||||| ||||    
T  6345823 ggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatcc-aaaataaaaatcacgtgcggttcggtt 6345743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 31126840 - 31126920
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||| ||||||| |||  |||||| || |||| ||| ||||||| |||||||||||||| ||||||| ||||    
T  31126840 ggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatcc-aaaataaaaatcacgtgcggttcggtt 31126920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 37948524 - 37948604
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||| ||||||| |||  |||||| || |||| ||| ||||||| |||||||||||||| ||||||| ||||    
T  37948524 ggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatcc-aaaataaaaatcacgtgcggttcggtt 37948604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 43619619 - 43619699
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||| ||||||| |||  |||||| || |||| ||| ||||||| |||||||||||||| ||||||| ||||    
T  43619619 ggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatcc-aaaataaaaatcacgtgcggttcggtt 43619699  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 10182827 - 10182870
Alignment:
Q  47 aaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||| |||||||||||||||| |||||||||||||||||| ||||    
T  10182827 aaaacgtcatccgatccaaaa-taaaaatcacatgcggttcggtt 10182870  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 34277486 - 34277406
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||||||||||| |||  |||||| |||||| |||| ||||||| |||||||||||||||||||||| ||||    
T  34277486 ggggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatcc-aaaataaaaatcacatgcggttcggtt 34277406  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 47975226 - 47975298
Alignment:
Q  21 ggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtttgg 94  Q
    ||||||||||| || | |||| | ||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  47975226 ggtgcggtttggattagtttttaggtaaaaagtcatccgatcc-aaaataaaaatcacatgcggttcggtttgg 47975298  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 7612558 - 7612489
Alignment:
Q  21 ggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    ||||||||||| ||||||||||| |||||| |||||||||| | ||| |||||||||||||||||| ||||    
T  7612558 ggtgcggtttggatcaattttgaggtaaaatgtcatccgattc-aaagtaaaaatcacatgcggttcggtt 7612489  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 670356 - 670437
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggttt 92  Q
    |||||||| | |||||||||||||||| ||||||   |||| ||||| |||||| ||||||||||||||||| |||| |||||    
T  670356 ggggtgttcgtggtgcggtttgaatcagttttgagacaaaatgtcatacgatcc-aaaataaaaatcacatgtggttcggttt 670437  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 42414129 - 42414207
Alignment:
Q  11 gggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    ||||||| ||||||||||||| |||  |||||| |||||| |||| ||||| |  ||||||||||||||||||||| ||||    
T  42414129 gggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgattc--aaataaaaatcacatgcggttcggtt 42414207  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 23120395 - 23120345
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccga 60  Q
    |||||||| |||||||||||||| || |||||||||  |||||||||||||    
T  23120395 ggggtgttcgcggtgcggtttgattcgattttgaaggtaaaagtcatccga 23120345  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 15544081 - 15544017
Alignment:
Q  13 gtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcac 78  Q
    ||||| |||||||| |||| |||| |||||| ||||||| || |||||||| ||||||||||||||    
T  15544081 gtgtttgcggtgcgatttggatcagttttgaggtaaaaaatcgtccgatcc-aaaataaaaatcac 15544017  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 23695507 - 23695567
Alignment:
Q  19 gcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacat 80  Q
    ||||||| ||||| ||  ||||||| |||||| |||||||||||| ||||||||||||||||    
T  23695507 gcggtgcagtttggatggattttgaggtaaaatgtcatccgatcc-aaaataaaaatcacat 23695567  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 24319582 - 24319510
Alignment:
Q  13 gtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtt 86  Q
    ||||| ||||||||||||| ||| ||||| | |||||| ||||||  |||| ||||||||||||||| ||||||    
T  24319582 gtgtttgcggtgcggtttggatcgatttttaggtaaaatgtcatcttatcc-aaaataaaaatcacacgcggtt 24319510  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 24574737 - 24574817
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||| ||||||| |||  |||||| || |||| ||| ||||| ||||| |||||||||||||||||| ||||    
T  24574737 ggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatacaaaa-taaaaatcacatgcggttcggtt 24574817  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 47310503 - 47310427
Alignment:
Q  14 tgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||| ||||||||||||||||  |||||||   |||| |||||||||| | ||||||| |||||||||||||| ||||    
T  47310503 tgtttgcggtgcggtttgaattgattttgagtcaaaatgtcatccgat-ctaaaataagaatcacatgcggttcggtt 47310427  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 41198077 - 41198157
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||||| ||||| ||| ||||||| |||||| |||| ||||||| |||||||||||||||||||||| ||||    
T  41198077 ggggtgttcgcggtgcagtttggatcgattttgaggtaaaatgtcaaccgatcc-aaaataaaaatcacatgcggttcggtt 41198157  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 11619591 - 11619673
Alignment:
Q  12 ggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtttgga 95  Q
    |||||| ||||||||||||| |||| |||||| | | || |||||||||||| ||||||||||||||||| |||| ||||||||    
T  11619591 ggtgtttgcggtgcggtttggatcagttttgaggcagaatgtcatccgatcc-aaaataaaaatcacatgtggttcggtttgga 11619673  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 24615298 - 24615224
Alignment:
Q  21 ggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtttggat 96  Q
    ||||| ||||| |||  |||||| |||||| |||| |||||| |||| |||||||||||||||||| |||||||||    
T  24615298 ggtgcagtttggatcggttttgaggtaaaatgtcaaccgatctaaaa-taaaaatcacatgcggttcggtttggat 24615224  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 28656104 - 28656024
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||||| |||||||||  ||||||   |||| |||||||||| ||||| |||||||||||||| ||| ||||    
T  28656104 ggggtgtttgcggtgcagtttgaatcggttttgagacaaaatgtcatccgattcaaaa-taaaaatcacatgcagttcggtt 28656024  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 8937355 - 8937425
Alignment:
Q  21 ggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggttt 92  Q
    ||||||||||| |||| |||||| |||||| |||||||||||| |||||||||||||||| ||||| |||||    
T  8937355 ggtgcggtttggatcagttttgaggtaaaatgtcatccgatcc-aaaataaaaatcacattcggttcggttt 8937425  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 1576370 - 1576290
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||| ||||||| |||  |||||| || |||| ||| ||||||| |||||||||||||| ||||||| ||||    
T  1576370 ggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatcc-aaaataaaaatcacgtgcggttcggtt 1576290  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 30396091 - 30396011
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||| ||||||| |||  |||||| ||||||||||| ||||||| ||||||||||||||| |||| ||||||    
T  30396091 ggggtgttcgcggtccggtttggatcggttttgaggtaaaaagtcaaccgatcc-aaaataaaaatcacacgcggcttggtt 30396011  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 10483967 - 10484052
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtttggat 96  Q
    |||||||| | ||||||||||| |||  |||||| |||||| ||||||| ||| |||| ||||||||||||| |||| |||||||||    
T  10483967 ggggtgtttgtggtgcggtttggatcggttttgaggtaaaatgtcatccaatctaaaa-taaaaatcacatgtggttcggtttggat 10484052  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 16704944 - 16705024
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||| ||||||| |||  |||||| || |||| ||| ||||||||||| |||||||||| ||||||||||||    
T  16704944 ggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaa-taaaaatcacgtgcggtttggtt 16705024  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 7607862 - 7607942
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    |||||||| ||||| ||||||| |||  |||||| || |||| ||| ||||||| |||||||||||||| ||||||| ||||    
T  7607862 ggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatcc-aaaataaaaatcacgtgcggttcggtt 7607942  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 21351880 - 21351959
Alignment:
Q  11 gggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    ||||||| ||||||||||||| |||  |||||| |||||| |||| ||||||| |||||||||||||||||| ||| ||||    
T  21351880 gggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatcc-aaaataaaaatcacatgcagttcggtt 21351959  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 42295374 - 42295454
Alignment:
Q  10 ggggtgttagcggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtt 91  Q
    ||||||||  |||||||||||| |||| |||||| |||||| | || ||||||| ||||||||||||||||| |||| ||||    
T  42295374 ggggtgttcacggtgcggtttggatcagttttgaggtaaaatgccaaccgatcc-aaaataaaaatcacatgtggttcggtt 42295454  T

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Target: scaffold0308 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 20392 - 20454
Alignment:
Q  32 aatcaattttgaagtaaaaagtcatccgatccaaaaataaaaatcacatgcggtttggtttgga 95  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||| |||| |||  |||||||    
T  20392 aatcaattttgaggtaaaaactcatccgat-caaaaataaaaatcaaatgcagttatgtttgga 20454  T

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