View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8293_high_1 (Length: 1307)

Name: NF8293_high_1
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8293_high_1
NF8293_high_1
[»] chr3 (5 HSPs)
chr3 (463-1291)||(46281487-46282313)
chr3 (17-392)||(46281042-46281416)
chr3 (201-286)||(6895821-6895906)
chr3 (1023-1080)||(51135474-51135531)
chr3 (1010-1056)||(29788329-29788375)
[»] chr6 (2 HSPs)
chr6 (205-355)||(1716428-1716577)
chr6 (1014-1086)||(20386845-20386917)
[»] chr1 (6 HSPs)
chr1 (997-1126)||(48181306-48181434)
chr1 (795-950)||(38570799-38570953)
chr1 (992-1134)||(43074790-43074931)
chr1 (859-939)||(43075131-43075211)
chr1 (1030-1077)||(11237314-11237361)
chr1 (992-1089)||(43074981-43075077)
[»] chr5 (5 HSPs)
chr5 (1023-1126)||(36519645-36519747)
chr5 (1014-1126)||(32695675-32695786)
chr5 (851-930)||(16556493-16556572)
chr5 (997-1126)||(22416408-22416537)
chr5 (1027-1080)||(18179792-18179845)
[»] chr7 (7 HSPs)
chr7 (992-1094)||(7443321-7443423)
chr7 (992-1091)||(45377229-45377328)
chr7 (1013-1157)||(18043881-18044024)
chr7 (713-773)||(34574507-34574566)
chr7 (1023-1086)||(1378722-1378785)
chr7 (1020-1126)||(1905825-1905930)
chr7 (998-1127)||(2670063-2670191)
[»] chr8 (7 HSPs)
chr8 (1023-1123)||(12573341-12573440)
chr8 (665-773)||(27842604-27842709)
chr8 (152-268)||(27841747-27841863)
chr8 (984-1126)||(21217759-21217900)
chr8 (995-1126)||(16796198-16796328)
chr8 (998-1085)||(21446172-21446259)
chr8 (1023-1128)||(19330084-19330188)
[»] chr4 (8 HSPs)
chr4 (752-950)||(18905531-18905725)
chr4 (1014-1124)||(29551997-29552106)
chr4 (663-769)||(588700-588805)
chr4 (663-868)||(7352294-7352495)
chr4 (992-1145)||(44648402-44648554)
chr4 (708-770)||(27059415-27059476)
chr4 (850-892)||(52432234-52432276)
chr4 (997-1126)||(49606444-49606572)
[»] scaffold0048 (1 HSPs)
scaffold0048 (1009-1086)||(87033-87110)
[»] chr2 (3 HSPs)
chr2 (685-769)||(34341205-34341288)
chr2 (956-1094)||(41755449-41755587)
chr2 (998-1135)||(37126688-37126824)


Alignment Details
Target: chr3 (Bit Score: 736; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 463 - 1291
Target Start/End: Original strand, 46281487 - 46282313
Alignment:
Q  463 atgtcactgatacctaaacaatttatgaatgaacgtacttgcttttcaatagattgtgtttgattttatgtattaatgattaaatgtatcattgaataaa 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46281487 atgtcactgatacctaaacaatttatgaatgaacgtacttgcttttcaatagattgtgtttgattttatgtattaatgattaaatgtatcattgaataaa 46281586  T
Q  563 gtaatggnnnnnnnnnnncataaaatcaagtttttggcaaaatgtgtagtttagcctctgtaattgataggagcaacaattaactgttgttgcagggatt 662  Q
    ||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46281587 gtaatg--aaaaaaaaaacataaaatcaagtttttggcaaaatgtgtagtttagcctctgtaattgataggagcaacaattaactgttgttgcagggatt 46281684  T
Q  663 ttttgtgtggttcaggttgcatcgacaatttttgttatcctcgaagcacgaaaacttatataaattgacgatgtctggttcatttgctgtaaaacacaac 762  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46281685 ttttgtgtggttcaggtttcatcgacaatttttgttatcctcgaagcacgaaaacttatataaattgacgatgtctggttcatttgctgtaaaacacaac 46281784  T
Q  763 aaagaaccatgtacgtttatctagtagatgagtgaaaaccaagttagctgcaatttactacaacagtgggaaaacccaatttgttacaggttcaggttga 862  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46281785 aaagaaccatgtacgtttatctagtagatgagtgaaaaccaagttagctgcaatttactacaaaagtgggaaaacccaatttgttacaggttcaggttga 46281884  T
Q  863 tgtcacactctttggcttgaatgatcaacttgaccaaattaaccgtcgactcaatcatagagacacaatgacggtggacaatgttgagatagttgtccat 962  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  46281885 tgtcacactctttggcttgaatgatcaactggaccaaattaaccgtcgactcaatcatagagacacgatgacagtggtcaatgttgagatagttgtccat 46281984  T
Q  963 ggaccgactcaaatggcaaccttcagctaacccagatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaa 1062  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46281985 gggccgactcagatggcaaccttcagctaacccagatgaagcttaggaacaacgatgacatgagaatcatgttctcgatatttggtcagtacaataccaa 46282084  T
Q  1063 aggagcaatcgagttggatgcttccttagtcatatctttttgaagatattcagaaaagtttgattcagtccagtaccgacgaagaaataagggcttacat 1162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  46282085 aggagcaatcgagttggatgcttccttagtcatatctttttgaagatattcagaaaagtttgattcaacccagtaccgacgaagaaataagggcttacat 46282184  T
Q  1163 ggaggaactagatggagaaattaatttggtagatccatagtttattatgttgttttacattgatggattatgttgttgaaattatgtcaaatgtatgttc 1262  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46282185 ggaggaactagatggagaaattaatttggtagatccatagtctattatgttgttttacgttgatggattatgttgttgaaattatgtcaaatgtatgttc 46282284  T
Q  1263 ttgttgttgttttgcatgaacatcgagtg 1291  Q
    |||||||||||||||||||||||||||||    
T  46282285 ttgttgttgttttgcatgaacatcgagtg 46282313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 46281042 - 46281416
Alignment:
Q  17 acatcatacatgagattggtaggggtccatatgtgagggatacatggcattatgcaccaggatacgtgggcatggttctatcaggtatctcacctgaagg 116  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46281042 acatcatacatgagattggtaggggtctatatgtgagggatacatggcattatgcaccaggatacgtgggtatggttctatcaggtatctcacctgaagg 46281141  T
Q  117 tactatgacctatcgagggagactcccataatatagctaatgaagaggtaatcattgagcatgaacatgctagaggtagtcctaattcattgatgatcat 216  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46281142 tactatgacctatcgagggagagtcccataatatagctaatgaagaggtaatcattgagcatgaacatgctagacgtagtcctaattcattgatgatcat 46281241  T
Q  217 caaaagttgcataaacatggtggatgcggggttgcatgatggtcaaacatacgaatacgtgcataatgttttattggatattagggatgagatgttccca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46281242 caaaagttgcataaacatggtggatgcggggttgcatgatggtcaaacatacgaatacgtgcataatgttttattggatattagggatgagatgttccc- 46281340  T
Q  317 aaccactacatacatgatttccaaaagaaggaggcagttaaggcggtccagagcaccgagcactgcgactgagatc 392  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  46281341 aaccactacatacatgatttccaaaagaaggaggcagttaaggcagtccagagcaccgagcactgtgactgagatc 46281416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 6895906 - 6895821
Alignment:
Q  201 attcattgatgatcatcaaaagttgcataaacatggtggatgcggggttgcatgatggtcaaacatacgaatacgtgcataatgtt 286  Q
    |||||||||||||||| | |||||||||||||||||| | || ||| ||||||||||||||||||||| || || ||||| |||||    
T  6895906 attcattgatgatcattagaagttgcataaacatggttgttgagggattgcatgatggtcaaacatacaaagacatgcatgatgtt 6895821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1023 - 1080
Target Start/End: Original strand, 51135474 - 51135531
Alignment:
Q  1023 tgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttgga 1080  Q
    |||||| ||||||||||||| |||||||||||| | | |||||| |||||||||||||    
T  51135474 tgagaaccatgttcttgatagttggtcagtacagttctaaaggaccaatcgagttgga 51135531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1010 - 1056
Target Start/End: Complemental strand, 29788375 - 29788329
Alignment:
Q  1010 aacaacgatgacatgagaatcatgttcttgatatttggtcagtacaa 1056  Q
    |||||||| |||||||| | |||||||||||||||||||||| ||||    
T  29788375 aacaacgacgacatgaggagcatgttcttgatatttggtcagcacaa 29788329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 205 - 355
Target Start/End: Complemental strand, 1716577 - 1716428
Alignment:
Q  205 attgatgatcatcaaaagttgcataaacatggtggatgcggggttgcatgatggtcaaacatacgaatacgtgcataatgttttattggatattagggat 304  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||||| ||| || ||| | ||||||| |||   ||||||  |    
T  1716577 attgatgatcatcagaagttgcataaacttggtggatgaggggttacatgatggtcaaacataagaagacttgcttgatgttttgttgatgattaggatt 1716478  T
Q  305 gagatgttcccaaaccactacatacatgatttccaaaagaaggaggcagtt 355  Q
    ||||||  ||| |||||||||||| | |||| ||| ||| |||||||||||    
T  1716477 gagatgcgccc-aaccactacatatacgattaccagaaggaggaggcagtt 1716428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1014 - 1086
Target Start/End: Original strand, 20386845 - 20386917
Alignment:
Q  1014 acgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttc 1086  Q
    |||| ||| |||||| |||||||| ||| |||||| |||||| |||||||||| | ||||||||||| |||||    
T  20386845 acgacgacgtgagaaccatgttctcgatctttggttagtacattaccaaaggaccgatcgagttggacgcttc 20386917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 5e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 997 - 1126
Target Start/End: Original strand, 48181306 - 48181434
Alignment:
Q  997 gatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcata 1096  Q
    ||||||||||||||||  ||||||| | |||| |||||||| |||||||||| |||||||||| |||||| | ||||||||||| ||| |  | |||| |    
T  48181306 gatgaagcttaggaacgccgatgacgtaagaaccatgttctcgatatttggttagtacaatactaaaggatcgatcgagttggacgctacggttgtcaga 48181405  T
Q  1097 tctttttgaagatattcagaaaagtttgat 1126  Q
    | || ||||||| |||||||||||||||||    
T  48181406 t-ttattgaagaaattcagaaaagtttgat 48181434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 795 - 950
Target Start/End: Original strand, 38570799 - 38570953
Alignment:
Q  795 tgaaaaccaagttagctgcaatttactacaacagtgggaaaacccaatttgttacaggttcaggttgatgtcacactctttggcttgaatgatcaacttg 894  Q
    |||| ||||||||| || ||||| |||||||| | |||||||| |||| | ||   ||||||||||||||| ||||| | |   || || |||||| | |    
T  38570799 tgaacaccaagttaactacaattaactacaac-gagggaaaactcaatcttttcagggttcaggttgatgttacactgtctttgttaaaggatcaattgg 38570897  T
Q  895 accaaattaaccgtcgactcaatcatagagacacaatgacggtggacaatgttgag 950  Q
    |||||||||||| ||||||||| || | ||||| || || ||||||||||||||||    
T  38570898 accaaattaaccatcgactcaaccacaaagacataaggagggtggacaatgttgag 38570953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 992 - 1134
Target Start/End: Complemental strand, 43074931 - 43074790
Alignment:
Q  992 acccagatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttag 1091  Q
    ||||| |||||||| |  ||| |||| ||| |||||| |||||||||||||||| ||||||| |||   ||| ||  |||||| |||||||||||||| |    
T  43074931 acccatatgaagctcattaacgacgacgacgtgagaaccatgttcttgatatttagtcagtataatttgaaatgacaaatcgatttggatgcttccttgg 43074832  T
Q  1092 tcatatctttttgaagatattcagaaaagtttgattcagtcca 1134  Q
    ||  |||  ||  |||||||||| ||||||||||||| |||||    
T  43074831 tcgaatc-cttcaaagatattcaaaaaagtttgattcggtcca 43074790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 859 - 939
Target Start/End: Complemental strand, 43075211 - 43075131
Alignment:
Q  859 ttgatgtcacactctttggcttgaatgatcaacttgaccaaattaaccgtcgactcaatcatagagacacaatgacggtgg 939  Q
    ||||||| ||||| | ||| ||||| |||||||| |||||||||||  |||||||||| || |||||||||| || |||||    
T  43075211 ttgatgttacactatctggattgaaagatcaactagaccaaattaattgtcgactcaaccacagagacacaaagagggtgg 43075131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1030 - 1077
Target Start/End: Complemental strand, 11237361 - 11237314
Alignment:
Q  1030 catgttcttgatatttggtcagtacaataccaaaggagcaatcgagtt 1077  Q
    ||||||||  |||||||||||||||||||| |||||| ||||||||||    
T  11237361 catgttctcaatatttggtcagtacaatactaaaggaccaatcgagtt 11237314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 992 - 1089
Target Start/End: Complemental strand, 43075077 - 43074981
Alignment:
Q  992 acccagatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttcctt 1089  Q
    ||||| |||||||| | ||||||| | ||| |||||| |||||||| ||||||| ||||||| | | | ||| || ||||||||||||| ||||||||    
T  43075077 acccatatgaagctcatgaacaac-acgacgtgagaaccatgttctcgatatttagtcagtatagttcgaaatgaccaatcgagttggacgcttcctt 43074981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 9e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 1023 - 1126
Target Start/End: Original strand, 36519645 - 36519747
Alignment:
Q  1023 tgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcatatctttttgaagatattcagaaaagtt 1122  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||   ||||||||||| ||||| || |||| ||| | ||||||| |||||||||||||    
T  36519645 tgagaaccatgttctcgatatttggtcagtacaatactaaaggactgatcgagttggacgcttcgttggtcaaatc-tgttgaagaaattcagaaaagtt 36519743  T
Q  1123 tgat 1126  Q
    ||||    
T  36519744 tgat 36519747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1014 - 1126
Target Start/End: Complemental strand, 32695786 - 32695675
Alignment:
Q  1014 acgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcatatctttttgaagatattc 1113  Q
    |||| ||| |||||||| |||||| ||| ||||||||||||||||| |||||| | ||||||||||| ||||  || |||| ||| | ||||| | ||||    
T  32695786 acgacgacgtgagaatcgtgttctcgatctttggtcagtacaatactaaaggaccgatcgagttggacgctttgttggtcagatc-tgttgaacaaattc 32695688  T
Q  1114 agaaaagtttgat 1126  Q
    |||||||||||||    
T  32695687 agaaaagtttgat 32695675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 851 - 930
Target Start/End: Original strand, 16556493 - 16556572
Alignment:
Q  851 ggttcaggttgatgtcacactctttggcttgaatgatcaacttgaccaaattaaccgtcgactcaatcatagagacacaa 930  Q
    ||||| ||||||||||| | | | | ||||||| |||||  | |||||||||||||||||||||||||  ||||||||||    
T  16556493 ggttcgggttgatgtcatattgtcttgcttgaaggatcagttggaccaaattaaccgtcgactcaatctcagagacacaa 16556572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 997 - 1126
Target Start/End: Original strand, 22416408 - 22416537
Alignment:
Q  997 gatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcata 1096  Q
    ||||||||| | |||| | |||||| |||||| ||||||||  | || ||||||||||| ||| |||||| |  |||||||||| ||||| || |||| |    
T  22416408 gatgaagctcaagaacgaagatgacgtgagaaccatgttctcaaaatgtggtcagtacagtactaaaggaccggtcgagttggacgcttcgttggtcaga 22416507  T
Q  1097 tctttttgaagatattcag-aaaagtttgat 1126  Q
    || | ||||||| |||||| |||||||||||    
T  22416508 tc-tgttgaagaaattcagcaaaagtttgat 22416537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1027 - 1080
Target Start/End: Complemental strand, 18179845 - 18179792
Alignment:
Q  1027 aatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttgga 1080  Q
    ||||||||||||||||||| ||||||| | ||| |||||| |||| ||||||||    
T  18179845 aatcatgttcttgatatttagtcagtaaagtactaaaggatcaattgagttgga 18179792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 3e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 992 - 1094
Target Start/End: Complemental strand, 7443423 - 7443321
Alignment:
Q  992 acccagatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttag 1091  Q
    ||||||||||| ||||||||  | || ||||||| ||||||||||||| ||||||||||||||||||  ||| || |||||||||| ||||||| ||| |    
T  7443423 acccagatgaatcttaggaatgatgaagacatgacaatcatgttcttggtatttggtcagtacaataataaatgaccaatcgagtttgatgctttcttgg 7443324  T
Q  1092 tca 1094  Q
    |||    
T  7443323 tca 7443321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 992 - 1091
Target Start/End: Original strand, 45377229 - 45377328
Alignment:
Q  992 acccagatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttag 1091  Q
    ||||| |||||| | |||||||| ||| |||||| || |||||| || |||||||||||||||||||  ||| ||   ||||||||||||||||||||||    
T  45377229 acccatatgaagttcaggaacaatgataacatgaaaaccatgttttttatatttggtcagtacaatattaaatgattgatcgagttggatgcttccttag 45377328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1013 - 1157
Target Start/End: Complemental strand, 18044024 - 18043881
Alignment:
Q  1013 aacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcatatctttttgaagatatt 1112  Q
    ||||| ||| ||| || ||| |||| ||||||| ||||||||||||| |||||| | || |||||| |  |||| || ||||  |||||  |||||||||    
T  18044024 aacgacgacgtgaaaaccatattctcgatattttgtcagtacaatactaaaggaccgattgagttgaactcttctttggtcaggtctttc-gaagatatt 18043926  T
Q  1113 cagaaaagtttgattcagtccagtaccgacgaagaaataagggct 1157  Q
    |||||||||||||||| | |||  | | |||||||||| ||||||    
T  18043925 cagaaaagtttgattcggcccaagaactacgaagaaattagggct 18043881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 713 - 773
Target Start/End: Complemental strand, 34574566 - 34574507
Alignment:
Q  713 aaaacttatataaattgacgatgtctggttcatttgctgtaaaacacaacaaagaaccatg 773  Q
    ||||||| |||||||||| | ||| |||||||||| ||||||||||||||||| |||||||    
T  34574566 aaaacttctataaattgatg-tgtttggttcatttactgtaaaacacaacaaataaccatg 34574507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1023 - 1086
Target Start/End: Complemental strand, 1378785 - 1378722
Alignment:
Q  1023 tgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttc 1086  Q
    |||||| |||||||| ||| ||||||||||||| ||| | |||| ||||| |||||||||||||    
T  1378785 tgagaaccatgttctcgatctttggtcagtacagtactagaggaccaatcaagttggatgcttc 1378722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1020 - 1126
Target Start/End: Original strand, 1905825 - 1905930
Alignment:
Q  1020 acatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcatatctttttgaagatattcagaaaa 1119  Q
    |||||| || |||||||| ||| |||||||| |||||||| | |||| | ||||||||||| ||||| || || | ||| ||||||| | ||||||||||    
T  1905825 acatgataaccatgttctcgatctttggtcattacaatactagaggaccgatcgagttggacgcttcgttggtaagatc-ttttgaacaaattcagaaaa 1905923  T
Q  1120 gtttgat 1126  Q
     ||||||    
T  1905924 ttttgat 1905930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 998 - 1127
Target Start/End: Complemental strand, 2670191 - 2670063
Alignment:
Q  998 atgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcatat 1097  Q
    ||||||| || |||| | || ||| ||||||  |||||||  ||||||||||| | || ||| |||||| | || |||||||| ||||| || || | ||    
T  2670191 atgaagcataagaacgatgacgacgtgagaacaatgttctcaatatttggtcaatgcattactaaaggaccgattgagttggacgcttcattggtaagat 2670092  T
Q  1098 ctttttgaagatattcagaaaagtttgatt 1127  Q
    ||||| ||||||||||| ||||||||||||    
T  2670091 ctttt-gaagatattcaaaaaagtttgatt 2670063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 5e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1023 - 1123
Target Start/End: Original strand, 12573341 - 12573440
Alignment:
Q  1023 tgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcatatctttttgaagatattcagaaaagtt 1122  Q
    |||||||||||||||| ||||||||||| |||| | | |||| | |||||||||||||||||||| | |||| ||  |||||||||| ||||||||||||    
T  12573341 tgagaatcatgttcttaatatttggtcaatacagttctaaagaaccaatcgagttggatgcttccatggtcagat-attttgaagattttcagaaaagtt 12573439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 665 - 773
Target Start/End: Original strand, 27842604 - 27842709
Alignment:
Q  665 ttgtgtggttcaggttgcatcgacaatttttgttatcctcgaagcacgaaaacttatataaattgacgatgtctggttcatttgctgtaaaacacaacaa 764  Q
    ||||||||||||||||||| |||||| || |||  ||| ||| ||||  |||||| ||||||||||   ||| || |||||||| |||||||||||||||    
T  27842604 ttgtgtggttcaggttgcaacgacaaattatgtggtccacgacgcacataaacttgtataaattga---tgtttgattcatttgttgtaaaacacaacaa 27842700  T
Q  765 agaaccatg 773  Q
    |||||||||    
T  27842701 agaaccatg 27842709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 268
Target Start/End: Original strand, 27841747 - 27841863
Alignment:
Q  152 gctaatgaagaggtaatcattgagcatgaacatgctagaggtagtcctaattcattgatgatcatcaaaagttgcataaacatggtggatgcggggttgc 251  Q
    |||||| | |||||| |||||||||| || |||| ||  | ||||| | ||||| |||||||||||| ||||||||||||||||||  ||| |||||| |    
T  27841747 gctaataaggaggtagtcattgagcaggagcatgttaaggatagtcttgattcaatgatgatcatcataagttgcataaacatggttcatgaggggtttc 27841846  T
Q  252 atgatggtcaaacatac 268  Q
     |||| |||||||||||    
T  27841847 gtgatagtcaaacatac 27841863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 984 - 1126
Target Start/End: Complemental strand, 21217900 - 21217759
Alignment:
Q  984 ttcagctaacccagatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgc 1083  Q
    ||||||| ||||| |||||| |||||||| | |||| | || ||| |||||||||||||||||||||||| | | | |||  | | ||||||||||| ||    
T  21217900 ttcagctcacccaaatgaagattaggaactatgatgtcttgggaaccatgttcttgatatttggtcagtatagttctaaataatcgatcgagttggacgc 21217801  T
Q  1084 ttccttagtcatatctttttgaagatattcagaaaagtttgat 1126  Q
    ||| || |||||||| |||  |||||||||  |||||||||||    
T  21217800 ttcattggtcatatc-tttcaaagatattcgaaaaagtttgat 21217759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 995 - 1126
Target Start/End: Original strand, 16796198 - 16796328
Alignment:
Q  995 cagatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtca 1094  Q
    ||||||||||| | |||| ||||  ||||||||| |||||||| ||| |||| |||||||  ||| |||| | | ||||||||||| ||||| || ||||    
T  16796198 cagatgaagctcatgaacgacgacaacatgagaaacatgttctcgatctttgctcagtacggtacaaaagcaacgatcgagttggacgcttcgttggtca 16796297  T
Q  1095 tatctttttgaagatattcagaaaagtttgat 1126  Q
     ||| | ||||||| ||||| |||||||||||    
T  16796298 gatc-tgttgaagaaattcataaaagtttgat 16796328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 998 - 1085
Target Start/End: Complemental strand, 21446259 - 21446172
Alignment:
Q  998 atgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgctt 1085  Q
    ||||||||  ||||| |||| |||||||||| |||||||||||||||| ||||||||| |||  ||||| | |||||| | |||||||    
T  21446259 atgaagctcgggaacgacgaagacatgagaaccatgttcttgatatttagtcagtacagtactgaaggaccgatcgagcttgatgctt 21446172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1023 - 1128
Target Start/End: Original strand, 19330084 - 19330188
Alignment:
Q  1023 tgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcatatctttttgaagatattcagaaaagtt 1122  Q
    |||||| ||||||||| || |||||| |||||||||| |||||| | ||| ||||||||||||| || |||| ||| | ||||| | ||||  |||||||    
T  19330084 tgagaaccatgttcttaatctttggtaagtacaatactaaaggaccgatcaagttggatgcttcattggtcaaatc-tattgaacaaattctaaaaagtt 19330182  T
Q  1123 tgattc 1128  Q
    ||||||    
T  19330183 tgattc 19330188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 752 - 950
Target Start/End: Complemental strand, 18905725 - 18905531
Alignment:
Q  752 taaaacacaacaaagaaccatgtacgtttatctagtagatgagtgaaaaccaagttagctgcaatttactacaacagtgggaaaacccaatttgttacag 851  Q
    ||||||||||| | |||||||| || |||||| ||||||| |  ||| ||||||||||| ||| ||||||||||| | | ||||||||||||||||   |    
T  18905725 taaaacacaactatgaaccatgaacatttatccagtagatca--gaacaccaagttagccgcagtttactacaac-gagagaaaacccaatttgtttagg 18905629  T
Q  852 gttcaggttgatgtcacactctttggcttgaatgatcaacttgaccaaattaaccgtcgactcaatcatagagacacaatgacggtggacaatgttgag 950  Q
    ||  ||||||||||||||   | ||| ||||| ||| | || ||||||| |||||||| |||||| || | |||||||| || |||||||| |||||||    
T  18905628 gtctaggttgatgtcacatagtctgggttgaaggataagctagaccaaa-taaccgtcaactcaaccacaaagacacaaggatggtggacattgttgag 18905531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1014 - 1124
Target Start/End: Original strand, 29551997 - 29552106
Alignment:
Q  1014 acgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcatatctttttgaagatattc 1113  Q
    |||| ||| |||||| |||||||| ||||||||||||||||| ||| |||||| |||||||||||||  |||| ||| ||| || || ||||||| | ||    
T  29551997 acgacgacgtgagaaccatgttctcgatatttggtcagtacagtactaaaggaacaatcgagttggagtcttcattattcagat-ttattgaagaaaatc 29552095  T
Q  1114 agaaaagtttg 1124  Q
    |||||||||||    
T  29552096 agaaaagtttg 29552106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 663 - 769
Target Start/End: Complemental strand, 588805 - 588700
Alignment:
Q  663 ttttgtgtggttcaggttgcatcgacaatttttgttatcctcgaagcacgaaaacttatataaattgacgatgtctggttcatttgctgtaaaacacaac 762  Q
    |||| |||||||||||||||||| |||||||| ||| ||| |||   || ||||||| ||||||||||  |||| ||||||||||  | |||||||||||    
T  588805 ttttttgtggttcaggttgcatctacaattttggttgtccacgacatacaaaaacttctataaattga-aatgtttggttcatttattataaaacacaac 588707  T
Q  763 aaagaac 769  Q
    |||||||    
T  588706 aaagaac 588700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 663 - 868
Target Start/End: Complemental strand, 7352495 - 7352294
Alignment:
Q  663 ttttgtgtggttcaggttgcatcgacaatttttgttatcctcgaagcacgaaaacttatataaattgacgatgtctggttcatttgctgtaaaacacaac 762  Q
    |||||||||||| |||||||| ||||||||| |||  ||| |||  ||  ||||||| || ||||||| ||  |  | ||||||||||||||||| ||||    
T  7352495 ttttgtgtggttgaggttgcaccgacaatttctgtagtccacgacacataaaaacttctaaaaattgatgaattgag-ttcatttgctgtaaaacccaac 7352397  T
Q  763 aaagaaccatgtacgtttatctagtagatgagtgaaaaccaagttagctgcaatttactacaacagtgggaaaacccaatttgttacaggttcaggttga 862  Q
    ||| ||||||| ||  |||||| ||||||   |||| |||||| |||||  | |||||||||||||| |||||||| ||| ||||   ||||| ||||||    
T  7352396 aaataaccatgaacacttatctggtagat--ttgaacaccaagctagctatagtttactacaacagt-ggaaaacctaatctgtttagggttcgggttga 7352300  T
Q  863 tgtcac 868  Q
    ||||||    
T  7352299 tgtcac 7352294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 992 - 1145
Target Start/End: Complemental strand, 44648554 - 44648402
Alignment:
Q  992 acccagatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttag 1091  Q
    |||||||| || || |||||||| ||||||   |||| | |||||| |||||||| ||| |||||| | ||| ||   ||||| || |||||||| || |    
T  44648554 acccagataaaactcaggaacaatgatgactcaagaaccttgttctcgatatttgatcaatacaattctaaaagactgatcgaattagatgcttcattgg 44648455  T
Q  1092 tcatatctttttgaagatattcagaaaagtttgattcagtccagtaccgacgaa 1145  Q
    |||||| |||  |||||||||||||||||||||||  | ||||||||| |||||    
T  44648454 tcatatatttc-gaagatattcagaaaagtttgatataatccagtacctacgaa 44648402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 708 - 770
Target Start/End: Original strand, 27059415 - 27059476
Alignment:
Q  708 gcacgaaaacttatataaattgacgatgtctggttcatttgctgtaaaacacaacaaagaacc 770  Q
    |||| ||||||| |||||||||  | ||| |||||||||||||||||||||||||||| ||||    
T  27059415 gcacaaaaacttctataaattggtg-tgtttggttcatttgctgtaaaacacaacaaaaaacc 27059476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 850 - 892
Target Start/End: Original strand, 52432234 - 52432276
Alignment:
Q  850 aggttcaggttgatgtcacactctttggcttgaatgatcaact 892  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||    
T  52432234 aggttcgggttgatgtcacactatttggcttgaaggatcaact 52432276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 997 - 1126
Target Start/End: Complemental strand, 49606572 - 49606444
Alignment:
Q  997 gatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcata 1096  Q
    ||||||||||| |||  |||| ||| |||||| |||||||| ||| |||||||| |||||||| | |||  | |||||||||||  |||| || |||| |    
T  49606572 gatgaagcttatgaatgacgacgacgtgagaaccatgttctcgatctttggtcaatacaatactagagggtcgatcgagttggacacttcgttggtcaga 49606473  T
Q  1097 tctttttgaagatattcagaaaagtttgat 1126  Q
    || | ||||| | ||||| |||||||||||    
T  49606472 tc-tgttgaacaaattcaaaaaagtttgat 49606444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1009 - 1086
Target Start/End: Original strand, 87033 - 87110
Alignment:
Q  1009 gaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttc 1086  Q
    |||| |||| ||| |||||| |||||||||||||||||||||||||| ||| | |||  ||||| ||||||| |||||    
T  87033 gaacgacgacgacgtgagaaccatgttcttgatatttggtcagtacagtactagagggtcaatcaagttggacgcttc 87110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 685 - 769
Target Start/End: Complemental strand, 34341288 - 34341205
Alignment:
Q  685 cgacaatttttgttatcctcgaagcacgaaaacttatataaattgacgatgtctggttcatttgctgtaaaacacaacaaagaac 769  Q
    |||||||||||||  ||| ||| |||| ||||||| |||||||||  | ||| ||||||||||| ||||||| ||||||||||||    
T  34341288 cgacaatttttgtggtccacgacgcacaaaaacttgtataaattggtg-tgtttggttcatttgttgtaaaagacaacaaagaac 34341205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 956 - 1094
Target Start/End: Original strand, 41755449 - 41755587
Alignment:
Q  956 tgtccatggaccgactcaaatggcaaccttcagctaacccagatgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtaca 1055  Q
    ||||||| |||| |||||||||| | | ||||| | || |  |||||||||||||||  ||| ||| |||||| ||||||||  ||||||||||| || |    
T  41755449 tgtccatcgaccaactcaaatggaagcgttcagttcacacgcatgaagcttaggaacttcgaggacgtgagaaccatgttctcaatatttggtcattata 41755548  T
Q  1056 ataccaaaggagcaatcgagttggatgcttccttagtca 1094  Q
     | | |||| | ||||||||||| || ||||||| ||||    
T  41755549 gtcctaaagtatcaatcgagttgaatccttccttggtca 41755587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 998 - 1135
Target Start/End: Original strand, 37126688 - 37126824
Alignment:
Q  998 atgaagcttaggaacaacgatgacatgagaatcatgttcttgatatttggtcagtacaataccaaaggagcaatcgagttggatgcttccttagtcatat 1097  Q
    |||||||| | |||| |||| ||| |||||| ||| |||| ||| ||| || |||||| ||| | |||  | ||||||||||| ||||| || |||| ||    
T  37126688 atgaagctcatgaacgacgacgacgtgagaaccattttctcgatctttagttagtacagtactagagggtcgatcgagttggacgcttcgttggtcacat 37126787  T
Q  1098 ctttttgaagatattcagaaaagtttgattcagtccag 1135  Q
    || || ||| | ||||||||||||||||||| ||||||    
T  37126788 ctgtt-gaacaaattcagaaaagtttgattcggtccag 37126824  T

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