View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8293_high_11 (Length: 250)
Name: NF8293_high_11
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8293_high_11 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 17027391 - 17027613
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
17027391 |
tggaggtcatggaagtgtttaccaagcagagttgcctattggacaagttgtagctgtgaagaaactccattcattacaacgtggagaaacgtccaatttg |
17027490 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17027491 |
aaagcttttgcaagtgagatcaaagctttaacagaaatccgacatagaaacattgctaagttatacgggtattgttcacatccattgcactcatttttag |
17027590 |
T |
|
| Q |
209 |
tttatgagctcttggagaaaggta |
232 |
Q |
| |
|
||||||||||| | |||||||||| |
|
|
| T |
17027591 |
tttatgagctcct-gagaaaggta |
17027613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 17557883 - 17558105
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
17557883 |
tggaggtcatggaagtgtttaccaagcagagttgcctattggacaagttgtagctgtgaagaaactccattcattacaacgtggagaaacgtccaatttg |
17557982 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17557983 |
aaagcttttgcaagtgagatcaaagctttaacagaaatccgacatagaaacattgctaagttatacgggtattgttcacatccattgcactcatttttag |
17558082 |
T |
|
| Q |
209 |
tttatgagctcttggagaaaggta |
232 |
Q |
| |
|
||||||||||| | |||||||||| |
|
|
| T |
17558083 |
tttatgagctcct-gagaaaggta |
17558105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 14504484 - 14504702
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
14504484 |
tggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatttg |
14504583 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| || ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
14504584 |
aaagcttttgcaagtgagataaaagctttaacagaaagccgacatcgaaacattgtgaagttatacgggtattgttcacatccattgcactcatttttgg |
14504683 |
T |
|
| Q |
209 |
tttatgagctcttggagaa |
227 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
14504684 |
tttatgagttcttggagaa |
14504702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 14483253 - 14483476
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| ||| || |
|
|
| T |
14483253 |
tggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctg |
14483352 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||| | ||||||||||||||| | |
|
|
| T |
14483353 |
aaagcttttgcaagtgagatccaacctttagcagaaatccgacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttgg |
14483452 |
T |
|
| Q |
209 |
tttatgagctcttggagaaaggta |
232 |
Q |
| |
|
|||||||| |||||||||| |||| |
|
|
| T |
14483453 |
tttatgagttcttggagaagggta |
14483476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 14468305 - 14468520
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| || |
|
|
| T |
14468305 |
tggaggacatggaagtgtttacaaagcagagttgcctacaggtcaagttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctg |
14468404 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| |||||||||| |||||||||| ||||||| ||| ||||||||||| ||||||||||||||||| | |
|
|
| T |
14468405 |
aaagcatttgcaagtgagatccaagctttaacagaaatccgacatcgaaacattgtgaagttatgcggttattgttcacatccattgcactcatttttgg |
14468504 |
T |
|
| Q |
209 |
tttatgagctcttgga |
224 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
14468505 |
tttatgagttcttgga |
14468520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 15032954 - 15033177
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||| ||| ||||| | ||||| || |
|
|
| T |
15032954 |
tggaggacatggaagtgtttacaaagcagagttgcccacaggtcaagttgtagctgtgaagaaacttcattcattacaaaatgaagaaatgcctaatctg |
15033053 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
|||||||| ||| ||||||| | ||||| |||| ||| |||||| | |||||||| ||||||||||||| ||||||||| | | | ||||||||||| | |
|
|
| T |
15033054 |
aaagctttcacaaatgagatccatgctttgacagaaattcgacatcgcaacattgtgaagttatacgggttttgttcacatcgactacactcatttttgg |
15033153 |
T |
|
| Q |
209 |
tttatgagctcttggagaaaggta |
232 |
Q |
| |
|
||||||| |||||||||| |||| |
|
|
| T |
15033154 |
tttatgaattcttggagaagggta |
15033177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 15017617 - 15017840
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |||| ||||||| ||| ||||| ||||||| || |
|
|
| T |
15017617 |
tggaggacatgcaagtgtttacaaagcagagttgccttcaggtcaagttgtagctgtgaagaaacttcatttattacaaaatgaagaaatgtctaatatg |
15017716 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
|||||||| ||| |||||| | ||||| |||| ||| |||||| | |||||||| ||||||||||||| ||||| ||| | | | ||||||||||| | |
|
|
| T |
15017717 |
aaagctttcacaaatgagattcatgctttgacagaaattcgacatcgcaacattgtgaagttatacgggttttgtttacatcgactacactcatttttgg |
15017816 |
T |
|
| Q |
209 |
tttatgagctcttggagaaaggta |
232 |
Q |
| |
|
||||||| |||||||||| |||| |
|
|
| T |
15017817 |
tttatgaattcttggagaagggta |
15017840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 14522227 - 14522011
Alignment:
| Q |
16 |
catggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttgaaagctt |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||| ||| | ||||||| |||||| | ||||||| |
|
|
| T |
14522227 |
catggaagtgtttacaaagcagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagctt |
14522128 |
T |
|
| Q |
116 |
ttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttagtttatga |
215 |
Q |
| |
|
||||| ||||||| | ||||| |||| |||||||||| | |||||||| |||||||| |||| ||||||||| | | | ||||||||||| |||||||| |
|
|
| T |
14522127 |
ttgcaggtgagattagtgctttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatga |
14522028 |
T |
|
| Q |
216 |
gctcttggagaaaggta |
232 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
14522027 |
attcttggagaagggta |
14522011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 15037521 - 15037744
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||| ||| |||| ||||||| || |
|
|
| T |
15037521 |
tggaggacatggaaatgtttacaaagcagagttgcccacaggtcaagttgtagctgtgaagaaacttcattcattacaaaatgaggaaatgtctaatctg |
15037620 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
||| |||| ||| ||||||| | ||||| |||| ||| |||||| | ||||||||||||||||| |||| ||||||||| | | | ||||| ||||| | |
|
|
| T |
15037621 |
aaatctttcacaaatgagatccatgctttgacagaaattcgacatcgcaacattgttaagttatatgggttttgttcacatcgactacactcgtttttgg |
15037720 |
T |
|
| Q |
209 |
tttatgagctcttggagaaaggta |
232 |
Q |
| |
|
||||||| |||||| ||| |||| |
|
|
| T |
15037721 |
tttatgaattcttggcgaagggta |
15037744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 14532355 - 14532140
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || ||||||||| ||| ||||| ||||||| || |
|
|
| T |
14532355 |
tggagggcatggaagtgtttacaaagcagagttgcctacaggtcaagttgttgctgtgaagaaacttcactcattacaaaatgaagaaatgtctaatctg |
14532256 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
||||| || ||| ||||||| | ||||| | || ||| |||||| | || ||||| ||||||||||| | ||||||||| | | | ||||||||||| | |
|
|
| T |
14532255 |
aaagcattcacaaatgagatccatgctttgaaagaaattcgacatcgcaatattgtgaagttatacggcttttgttcacatcgactacactcatttttgg |
14532156 |
T |
|
| Q |
209 |
tttatgagctcttgga |
224 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
14532155 |
tttatgaattcttgga |
14532140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 15011502 - 15011725
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| ||| ||||| | | ||| | |
|
|
| T |
15011502 |
tggaggacatggaaatgtttacaaagcagaactgcctacaggtcaagttgtagctgtgaagaaacttcactcattacaaaatgaagaaatgccaaatcgg |
15011601 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
|||||||| ||| ||||||| | ||||| |||| ||| |||||| | |||||||| ||||||||||| | ||||||||| | | | ||||||||||| | |
|
|
| T |
15011602 |
aaagctttcacaaatgagatccatgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttgg |
15011701 |
T |
|
| Q |
209 |
tttatgagctcttggagaaaggta |
232 |
Q |
| |
|
||||||| |||||||||| |||| |
|
|
| T |
15011702 |
tttatgaattcttggagaagggta |
15011725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 15041096 - 15041312
Alignment:
| Q |
16 |
catggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttgaaagctt |
115 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| || ||||| |||||||||||||||||||||||| ||| | ||||||| |||||| | ||||||| |
|
|
| T |
15041096 |
catggaagtgattacaaagcagagttgcctactggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagctt |
15041195 |
T |
|
| Q |
116 |
ttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttagtttatga |
215 |
Q |
| |
|
|||||||| |||| | |||| |||| |||||||||| | |||||||| |||||||| |||| ||||||||| | | | ||||||||||| |||||||| |
|
|
| T |
15041196 |
ttgcaagttagattagtgcttagacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatga |
15041295 |
T |
|
| Q |
216 |
gctcttggagaaaggta |
232 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
15041296 |
attcttggagaagggta |
15041312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 15002609 - 15002832
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| ||| ||||| | | ||| | |
|
|
| T |
15002609 |
tggaggacatggaaatgtttacaaagcagaactgcctacaggtcaagttgtagctgtgaagaaacttcactcattacaaaatgaagaaatgccaaatagg |
15002708 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
|||||||| ||| ||||||| | ||||| |||| ||| |||||| | |||||||| ||||||||||| | ||||||||| | | | ||||||||||| | |
|
|
| T |
15002709 |
aaagctttcacaaatgagatccatgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttgg |
15002808 |
T |
|
| Q |
209 |
tttatgagctcttggagaaaggta |
232 |
Q |
| |
|
||||||| |||||| ||| |||| |
|
|
| T |
15002809 |
tttatgaattcttggcgaagggta |
15002832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 6991 - 7211
Alignment:
| Q |
10 |
ggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttga |
109 |
Q |
| |
|
||||| || |||||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
6991 |
ggaggacacggaagtgtttacaaagcagagttccccacaggacaagttgtagcggtgaagaaactccattcattacaaaatggagagacgtccaatctga |
7090 |
T |
|
| Q |
110 |
aagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttagt |
209 |
Q |
| |
|
||||||| |||||||||||| |||||||||| | |||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
7091 |
aagctttcgcaagtgagatccaagctttaactgaaatccggcatcgaaacattgtgaagttatacgggtattgttcacatccattgcactcatttttggt |
7190 |
T |
|
| Q |
210 |
ttatgagctcttggagaaagg |
230 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
7191 |
ttatgagttcttggagaaagg |
7211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 13290 - 13513
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||| |||| ||||||||||||||||||||||| |||| |||| |||||| ||||| ||||||| || |
|
|
| T |
13290 |
tggaggacatggaaatgtttacaaagcagagttgccttcaggtcaagttgtagctgtgaagaaacttcatttattagaacatgaagaaatgtctaatatg |
13389 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
||||| || | ||||||| | ||||| |||| ||| |||||| | |||||||| ||||||||||| | ||||||||| | | | ||||||||||| | |
|
|
| T |
13390 |
aaagcattcaataatgagatccatgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttgg |
13489 |
T |
|
| Q |
209 |
tttatgagctcttggagaaaggta |
232 |
Q |
| |
|
||||||| | |||||||| |||| |
|
|
| T |
13490 |
tttatgaatttttggagaagggta |
13513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 7635 - 7855
Alignment:
| Q |
10 |
ggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttga |
109 |
Q |
| |
|
||||| || |||||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
7635 |
ggaggacacggaagtgtttacaaagcagagttccccacaggacaagttgtagcggtgaagaaactccattcattacaaaatggagagacgtccaatctga |
7734 |
T |
|
| Q |
110 |
aagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttagt |
209 |
Q |
| |
|
||||||| |||||||||||| |||||||||| | |||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
7735 |
aagctttcgcaagtgagatccaagctttaactgaaatccggcatcgaaacattgtgaagttatacgggtattgttcacatccattgcactcatttttggt |
7834 |
T |
|
| Q |
210 |
ttatgagctcttggagaaagg |
230 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
7835 |
ttatgagttcttggagaaagg |
7855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 13933 - 14156
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttg |
108 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||| |||| ||||||||||||||||||||||| |||| |||| |||||| ||||| ||||||| || |
|
|
| T |
13933 |
tggaggacatggaaatgtttacaaagcagagttgccttcaggtcaagttgtagctgtgaagaaacttcatttattagaacatgaagaaatgtctaatatg |
14032 |
T |
|
| Q |
109 |
aaagcttttgcaagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacacccattgcactcatttttag |
208 |
Q |
| |
|
||||| || | ||||||| | ||||| |||| ||| |||||| | |||||||| ||||||||||| | ||||||||| | | | ||||||||||| | |
|
|
| T |
14033 |
aaagcattcaataatgagatccatgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttgg |
14132 |
T |
|
| Q |
209 |
tttatgagctcttggagaaaggta |
232 |
Q |
| |
|
||||||| | |||||||| |||| |
|
|
| T |
14133 |
tttatgaatttttggagaagggta |
14156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 5168 - 4998
Alignment:
| Q |
19 |
ggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttgaaagcttttg |
118 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||||| || ||||| || |||||||||||| || | ||| |||| ||| || | ||| ||||| |
|
|
| T |
5168 |
ggaagtgtttacaaagcagagttgccctcaggtcaagtagttgctgttaaaaaactccattcaataacaaatgcggaaaattctgatctaaaatgttttg |
5069 |
T |
|
| Q |
119 |
caagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacac |
189 |
Q |
| |
|
||| ||||||||||||||| |||| ||| |||||| | |||||||| ||| |||| || |||||||||||| |
|
|
| T |
5068 |
caaatgagatcaaagctttgacagaaattcgacattgtaacattgtgaagctatatggatattgttcacac |
4998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 14001 - 13831
Alignment:
| Q |
19 |
ggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattcattacaacatggagaaacgtctaatttgaaagcttttg |
118 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||||| || ||||| || |||||||||||| || | ||| |||| ||| || | ||| ||||| |
|
|
| T |
14001 |
ggaagtgtttacaaagcagagttgccctcaggtcaagtagttgctgttaaaaaactccattcaataacaaatgcggaaaattctgatctaaaatgttttg |
13902 |
T |
|
| Q |
119 |
caagtgagatcaaagctttaacagtaatccgacatagaaacattgttaagttatacgggtattgttcacac |
189 |
Q |
| |
|
||| ||||||||||||||| |||| ||| |||||| | |||||||| ||| |||| || |||||||||||| |
|
|
| T |
13901 |
caaatgagatcaaagctttgacagaaattcgacattgtaacattgtgaagctatatggatattgttcacac |
13831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 15664842 - 15664780
Alignment:
| Q |
19 |
ggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattca |
81 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||| ||||| || ||||| || |||||||||||| |
|
|
| T |
15664842 |
ggaagtgtttacaaagcaaagttgcccacaggtcaagtagttgctgttaaaaaactccattca |
15664780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 14606406 - 14606478
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattca |
81 |
Q |
| |
|
|||||| ||||||||||| ||||||||| | |||| ||||| ||||| || |||||||| || ||||||||| |
|
|
| T |
14606406 |
tggagggcatggaagtgtctacaaagcaaagttgcacacaggtcaagtagttgctgtgaaaaagctccattca |
14606478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 16025583 - 16025655
Alignment:
| Q |
9 |
tggaggtcatggaagtgtttacaaagcagatttgcctacaggacaagttgtagctgtgaagaaactccattca |
81 |
Q |
| |
|
|||||| ||||||||||| ||||||||| | |||| ||||| ||||| || |||||||| || ||||||||| |
|
|
| T |
16025583 |
tggagggcatggaagtgtctacaaagcaaagttgcacacaggtcaagtagttgctgtgaaaaagctccattca |
16025655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University