View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8293_high_12 (Length: 247)
Name: NF8293_high_12
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8293_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 51759787 - 51759568
Alignment:
| Q |
12 |
gaacctgtgttttgtcatgctagaacctattttgctgcttgattttgatctctaaaagcttcatcgtgacattgtgaagtatggattaacatcggagttg |
111 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51759787 |
gaacctatgttttgtcatgctagaacctattttgctgcttgattttgatctctaaaagcttcatcgtgacattgtgaagtatggattaacttcggagttg |
51759688 |
T |
|
| Q |
112 |
tttctggcatatattcaaaattgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaaccaactt |
211 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51759687 |
tttctggtatatattcaaaattgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaaccaactt |
51759588 |
T |
|
| Q |
212 |
ttgatttggaatgttagtat |
231 |
Q |
| |
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|||||||||||||||||||| |
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| T |
51759587 |
ttgatttggaatgttagtat |
51759568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 6685180 - 6684968
Alignment:
| Q |
19 |
tgttttgtcatgctagaacctattttgctgcttgattttgatctctaaaagcttcatcgtgacattgtgaagtatggattaacatcggagttgtttctgg |
118 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||| ||| |
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| T |
6685180 |
tgttttgtcatgctagaaccaattttgctggttgattttgatctctaagagcttcatgatgacattgtgaagtatggattaacttgggagttgtttttgg |
6685081 |
T |
|
| Q |
119 |
catatattcaaaattgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaaccaacttttgattt |
218 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6685080 |
catatattcaaaattgtcttctcagtccattcaacatagttatttggatattactagcttacatgtatgatatcagttttgtacaaccaacttttgattt |
6684981 |
T |
|
| Q |
219 |
ggaatgttagtat |
231 |
Q |
| |
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||||| ||||||| |
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| T |
6684980 |
ggaatattagtat |
6684968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 30822069 - 30821943
Alignment:
| Q |
105 |
ggagttgtttctggcatatattcaaaattgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaa |
204 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30822069 |
ggagttttttctggcatatattcaaaattgtcttctcaatccattcaacatagttatttggatattactagcttacatgtatgatatcagttttgtacaa |
30821970 |
T |
|
| Q |
205 |
ccaacttttgatttggaatgttagtat |
231 |
Q |
| |
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| T |
30821969 |
ccaacttttgatttggaatgttagtat |
30821943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 30812796 - 30812681
Alignment:
| Q |
116 |
tggcatatattcaaaattgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaaccaacttttga |
215 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
30812796 |
tggcatttattcaaaattgtcttctcagtccattcaacatagttatttggatattactagcttacatgtatgatattagttttgtacaaccaatttttga |
30812697 |
T |
|
| Q |
216 |
tttggaatgttagtat |
231 |
Q |
| |
|
|||| ||||||||||| |
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| T |
30812696 |
tttgaaatgttagtat |
30812681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 12592731 - 12592646
Alignment:
| Q |
146 |
cattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgttagtat |
231 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12592731 |
cattcaacatagttatttggatattactagcttacatgtatgttatcagttttgtacaaccaacttttgatttggaatgttagtat |
12592646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 27810826 - 27810681
Alignment:
| Q |
84 |
tgtgaagtatggattaacatcggagttgtttctggcatatattcaaaattgtcttctcaatccattcaacatagttatttagatattac--tagcttaca |
181 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||| |
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| T |
27810826 |
tgtgaagtatggattaacttgggagttttttctggcttatattcaaaattgtattctcagtccattcaacatagttatttggatattactatagcttaca |
27810727 |
T |
|
| Q |
182 |
tgtatgatatcagttttgtacaaccaacttttgatttggaatgtta |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27810726 |
tgtatgatatcagttttgtacaaccaacttttgatttggaatgtta |
27810681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 26357949 - 26357740
Alignment:
| Q |
32 |
tagaacctattttgctgcttgattttgatctctaaaagcttcatcgtgacattgtgaagtatggattaacatcggagttgtttctggcatatattcaaaa |
131 |
Q |
| |
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||||||||||||||||||||||| || ||||||| || ||| || | ||||||||||| |||||||||| | |||||||||||||||||||||| ||| |
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| T |
26357949 |
tagaacctattttgctgcttgatctttatctctagaatctttatgataacattgtgaaggatggattaacctgggagttgtttctggcatatatttgaaa |
26357850 |
T |
|
| Q |
132 |
ttgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatga----------tatcagttttgtacaaccaacttttgatttgga |
221 |
Q |
| |
|
||||||||||| ||||| ||||| ||| |||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |
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| T |
26357849 |
ttgtcttctcagtccatccaacacagtgatttggatattactagcttacatgtttgatatcagtgtttatcagtgttgtacaaccaacttttgatttggt |
26357750 |
T |
|
| Q |
222 |
atgttagtat |
231 |
Q |
| |
|
|||||||||| |
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|
| T |
26357749 |
atgttagtat |
26357740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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