View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8293_high_3 (Length: 798)
Name: NF8293_high_3
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8293_high_3 |
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| [»] scaffold0449 (1 HSPs) |
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| [»] scaffold0566 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 15 - 798
Target Start/End: Complemental strand, 2871 - 2094
Alignment:
| Q |
15 |
ataagtaacggagagcaatctcatacaaggtcctctccatccaatacatgcacaaaaacgcattgaagataaatccaaaaactcataaatcaattcttga |
114 |
Q |
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| T |
2871 |
ataagtaacggagagcaatctcatacaaggtcctctccatccaatatatgcacaaaaacacattgaagataaatccaaaaactcataaatcaattcttga |
2772 |
T |
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| Q |
115 |
accaaccattaaacccaaaacaagatatccagaaaaacgcattgaagaaacaagcaagaaagcttacgcagatggactgttacgtgagtccgtgacaagg |
214 |
Q |
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| T |
2771 |
accaaccattaaacccaaaacaagatatccagaaaaacgcattgaagaaacaagcaagaaagcttacgcaggtggactgttacatgagtccgtgacaagg |
2672 |
T |
|
| Q |
215 |
acgttcc-tgcaatcctcatagctatggaagctaggctgacactagaacgtggccccatatggaagagagtttgctgactgtgaccctagtagctatatg |
313 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
2671 |
acgttccctgcaatcctcatagctatggaagctaggctgacactagaacgtggccccatatggaagag--tttgctgactatgaccctagtagctatatg |
2574 |
T |
|
| Q |
314 |
ctgagctgcaaagacctgctcgtaataagcgtgagctatcctggctcgaggctatttgatctaaataggtgcagaagcatacgcaagagccccatgaacc |
413 |
Q |
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| T |
2573 |
ctgagctgcaaagacctgctcgtaataagcgtgagctatcctggctcgaggctatttgatctaaataggtgcagaagcatacgcaagagccccatgaacc |
2474 |
T |
|
| Q |
414 |
atagctccattgttggccattttttagcagaactgtctttggagagaaagatagtccttgaaaatttggcgctaactaacttgtttgattttctaaccga |
513 |
Q |
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| T |
2473 |
atagctccattgttggccattttttagcagaactgtctttggagagaaagatagttcttgaaaatttggcgctaactaacttgtttgattttctaaccga |
2374 |
T |
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| Q |
514 |
tgatgatcgtgactattcggttatgcgttcgttaattgcagcagctttacactatttataaattggataacgaacgtggatactaatgtttattttgtta |
613 |
Q |
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| T |
2373 |
taatgatcgtgactattcggttatgcgttcgttaattg---cagctttacactatttataaattggataacgaacgtggatactaatgcttattttgtta |
2277 |
T |
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| Q |
614 |
ttatgaaatggatttcatttgatatttttgtacactaatggtttatataaattaaatttattaaaaacttgaa-gtgagctcaaatactttattgtaaca |
712 |
Q |
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| T |
2276 |
ttatgaaatggatttcatttgatatttttgtacactaatggtttatataaattaaatttattaaaaacttgaaggtgagctcaaatactttattgtaaca |
2177 |
T |
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| Q |
713 |
ctctctgcaaattaaaatggnnnnnnnnacttaaacgcaaaattatttgtaatatttgatgtgttagacctgtcatttagtccatt |
798 |
Q |
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| T |
2176 |
ctctctacaaattaaaatgg-tttttttacttaaa--caaaattatttgtaatatttgatgtgttagacctgtcatttagttcatt |
2094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 3e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 182 - 479
Target Start/End: Complemental strand, 11086657 - 11086357
Alignment:
| Q |
182 |
gcagatggactgttacgtgagtccgtgacaaggacgtt----cctgcaatcctcatagctatggaagctaggctgacactagaacgtggccccatatgga |
277 |
Q |
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|||||||||| ||||||||||| |||| |||||| || || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
11086657 |
gcagatggacctttacgtgagtctgtgataaggacattatgccccgcaatcctcatagctattgaagcaaggctgacactagaacgtggccccatatgga |
11086558 |
T |
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| Q |
278 |
agagagtttgctgactgtgaccctagtagctatatgctgagctgcaaagacctgctcgtaataagcgtgagctatcctggctcgaggctatttgatctaa |
377 |
Q |
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| T |
11086557 |
agag--ttcgctgatggtaaccctagtagctacatgatgagctgcaaaaacctgctcgtaataagcacgggcaatcctagctcgaggatattggatcaaa |
11086460 |
T |
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| Q |
378 |
ataggtgcagaagcatacgcaagagccccatgaaccatagctccattgttggccattttttagcagaa-ctgtctttggagagaaagatagtccttgaaa |
476 |
Q |
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||||||||||||||||| |||||||||| ||||||||| |||||||||||| |||||||||||||||| | ||||| ||||||||||| || ||||||| |
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| T |
11086459 |
ataggtgcagaagcataagcaagagccctatgaaccatggctccattgttgaccattttttagcagaaccaatctttagagagaaagatggttcttgaaa |
11086360 |
T |
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| Q |
477 |
att |
479 |
Q |
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| T |
11086359 |
att |
11086357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 4086 - 4117
Alignment:
| Q |
29 |
gcaatctcatacaaggtcctctccatccaata |
60 |
Q |
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| T |
4086 |
gcaatctcatacaaggtcctctccatccaata |
4117 |
T |
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Back To:
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