View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8293_high_7 (Length: 497)

Name: NF8293_high_7
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8293_high_7
NF8293_high_7
[»] chr2 (20 HSPs)
chr2 (144-479)||(4981273-4981608)
chr2 (61-108)||(42283136-42283183)
chr2 (24-105)||(3091842-3091923)
chr2 (24-105)||(13104580-13104661)
chr2 (64-106)||(14714127-14714169)
chr2 (24-105)||(32750099-32750180)
chr2 (25-105)||(7086013-7086093)
chr2 (68-104)||(9202406-9202442)
chr2 (67-107)||(34138923-34138963)
chr2 (67-106)||(7428572-7428611)
chr2 (24-105)||(11164265-11164346)
chr2 (106-135)||(4981230-4981259)
chr2 (75-108)||(12066065-12066098)
chr2 (64-105)||(34249722-34249763)
chr2 (64-105)||(36133115-36133156)
chr2 (68-109)||(45693352-45693393)
chr2 (67-107)||(5455340-5455380)
chr2 (67-107)||(11229208-11229248)
chr2 (64-108)||(12600189-12600233)
chr2 (73-105)||(19913935-19913967)
[»] chr8 (17 HSPs)
chr8 (24-105)||(23258133-23258214)
chr8 (64-109)||(9046956-9047001)
chr8 (24-105)||(28927782-28927863)
chr8 (24-105)||(40413252-40413333)
chr8 (68-106)||(37101573-37101611)
chr8 (64-105)||(5502503-5502544)
chr8 (73-105)||(40842074-40842106)
chr8 (67-114)||(34474095-34474142)
chr8 (24-102)||(38128418-38128496)
chr8 (67-105)||(1370184-1370222)
chr8 (67-105)||(11879378-11879416)
chr8 (67-105)||(11896794-11896832)
chr8 (67-105)||(30925543-30925581)
chr8 (67-105)||(39719130-39719168)
chr8 (67-105)||(45101540-45101578)
chr8 (64-105)||(21273599-21273640)
chr8 (68-105)||(42768010-42768047)
[»] chr7 (20 HSPs)
chr7 (64-114)||(12142025-12142075)
chr7 (24-110)||(46651773-46651859)
chr7 (64-105)||(43445548-43445589)
chr7 (64-111)||(8792483-8792530)
chr7 (61-108)||(21858885-21858932)
chr7 (24-105)||(5978680-5978761)
chr7 (64-106)||(10591293-10591335)
chr7 (66-104)||(21839023-21839061)
chr7 (67-116)||(7390652-7390701)
chr7 (64-107)||(40717125-40717169)
chr7 (70-105)||(32171024-32171059)
chr7 (67-105)||(7807199-7807237)
chr7 (24-105)||(37351879-37351960)
chr7 (24-105)||(44894363-44894444)
chr7 (64-105)||(6353870-6353911)
chr7 (67-108)||(40842551-40842592)
chr7 (68-105)||(43657147-43657184)
chr7 (67-107)||(25887727-25887767)
chr7 (67-103)||(32154441-32154477)
chr7 (68-104)||(36990185-36990221)
[»] chr4 (27 HSPs)
chr4 (24-105)||(31275247-31275328)
chr4 (24-107)||(5234358-5234441)
chr4 (61-111)||(47998731-47998781)
chr4 (24-105)||(55927085-55927166)
chr4 (24-107)||(38952790-38952873)
chr4 (64-110)||(1580166-1580213)
chr4 (64-111)||(42915102-42915149)
chr4 (67-104)||(9567580-9567617)
chr4 (25-105)||(25523085-25523165)
chr4 (64-101)||(51389457-51389494)
chr4 (64-107)||(41609558-41609602)
chr4 (67-107)||(41951680-41951720)
chr4 (64-106)||(15596537-15596579)
chr4 (67-105)||(22257085-22257123)
chr4 (67-105)||(31240793-31240831)
chr4 (24-105)||(31658020-31658101)
chr4 (24-105)||(36444284-36444365)
chr4 (67-105)||(36792477-36792515)
chr4 (64-105)||(1033289-1033330)
chr4 (64-108)||(2613502-2613547)
chr4 (68-105)||(30973728-30973765)
chr4 (64-105)||(36408093-36408134)
chr4 (64-105)||(36413216-36413257)
chr4 (64-105)||(46173678-46173719)
chr4 (68-105)||(48372114-48372151)
chr4 (67-107)||(6953274-6953314)
chr4 (67-106)||(38960547-38960587)
[»] chr3 (21 HSPs)
chr3 (24-105)||(7231895-7231976)
chr3 (24-107)||(29706004-29706087)
chr3 (25-107)||(28300533-28300615)
chr3 (24-97)||(11173551-11173624)
chr3 (24-105)||(46473229-46473310)
chr3 (64-101)||(9028014-9028051)
chr3 (68-105)||(32457642-32457679)
chr3 (61-102)||(44695150-44695191)
chr3 (24-107)||(48649682-48649765)
chr3 (24-106)||(41957614-41957696)
chr3 (67-114)||(44365172-44365218)
chr3 (24-102)||(49130955-49131033)
chr3 (67-105)||(6126599-6126637)
chr3 (24-105)||(20380778-20380859)
chr3 (67-105)||(31997947-31997985)
chr3 (67-105)||(43169643-43169681)
chr3 (67-105)||(51464155-51464193)
chr3 (67-108)||(31249207-31249248)
chr3 (64-105)||(33007502-33007543)
chr3 (68-105)||(46953094-46953131)
chr3 (66-106)||(34662950-34662990)
[»] chr6 (7 HSPs)
chr6 (61-112)||(2241708-2241759)
chr6 (64-107)||(32853031-32853074)
chr6 (68-105)||(1434565-1434602)
chr6 (68-105)||(25166770-25166807)
chr6 (64-105)||(30733150-30733191)
chr6 (64-105)||(32253922-32253963)
chr6 (61-97)||(12187084-12187120)
[»] chr5 (25 HSPs)
chr5 (64-115)||(2117519-2117570)
chr5 (24-106)||(39595375-39595457)
chr5 (24-105)||(33567128-33567209)
chr5 (24-100)||(34381113-34381189)
chr5 (25-104)||(125194-125273)
chr5 (67-107)||(40223672-40223712)
chr5 (61-104)||(12349923-12349966)
chr5 (64-110)||(9403654-9403700)
chr5 (24-109)||(12718265-12718350)
chr5 (64-109)||(9714020-9714065)
chr5 (24-107)||(36624419-36624502)
chr5 (67-106)||(3141640-3141679)
chr5 (64-107)||(24431505-24431548)
chr5 (67-105)||(11306840-11306878)
chr5 (24-109)||(12779491-12779576)
chr5 (67-101)||(14206534-14206568)
chr5 (24-105)||(20719904-20719985)
chr5 (67-105)||(21749503-21749541)
chr5 (67-109)||(31284279-31284321)
chr5 (64-98)||(43482506-43482540)
chr5 (67-108)||(1774171-1774212)
chr5 (68-105)||(5130266-5130303)
chr5 (73-105)||(6515328-6515360)
chr5 (67-111)||(19127268-19127312)
chr5 (67-106)||(39032491-39032531)
[»] chr1 (20 HSPs)
chr1 (64-105)||(2362510-2362551)
chr1 (24-106)||(40610330-40610412)
chr1 (67-105)||(5304719-5304757)
chr1 (64-105)||(28716284-28716325)
chr1 (64-105)||(49453618-49453659)
chr1 (67-106)||(4638069-4638108)
chr1 (68-107)||(7645441-7645480)
chr1 (67-105)||(18959148-18959187)
chr1 (61-104)||(51703002-51703045)
chr1 (67-105)||(8391228-8391266)
chr1 (67-105)||(31480023-31480061)
chr1 (67-105)||(48872840-48872878)
chr1 (67-105)||(49425880-49425918)
chr1 (64-105)||(37843324-37843365)
chr1 (61-106)||(47187573-47187618)
chr1 (64-105)||(51571567-51571608)
chr1 (85-117)||(12708258-12708290)
chr1 (85-117)||(12717803-12717835)
chr1 (61-101)||(27687415-27687455)
chr1 (71-107)||(37516059-37516095)
[»] scaffold0018 (1 HSPs)
scaffold0018 (64-105)||(36142-36184)
[»] scaffold0204 (1 HSPs)
scaffold0204 (68-105)||(27485-27522)
[»] scaffold0001 (1 HSPs)
scaffold0001 (68-105)||(396007-396044)
[»] scaffold0449 (1 HSPs)
scaffold0449 (68-111)||(7976-8019)
[»] scaffold0060 (1 HSPs)
scaffold0060 (67-105)||(6961-6999)
[»] scaffold0115 (1 HSPs)
scaffold0115 (64-105)||(15078-15119)
[»] scaffold0036 (1 HSPs)
scaffold0036 (68-105)||(18148-18185)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 144 - 479
Target Start/End: Original strand, 4981273 - 4981608
Alignment:
Q  144 agggaccaaaactataattatagctatttcattttaaagtaggaaatttcattaaataaatccatgacatcttgattgtttagactaaattaacaaattt 243  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  4981273 agggacctaaactgtaattatagctatttcattttaaagtaggaaatttcattaaataaatccatgacatcttgatagtttagaccaaattaacaaattt 4981372  T
Q  244 tataaaccgttgagactacccatttatttatttattggaagataggggctacttattatatttatataatttagagagtggattagagagaagataataa 343  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4981373 tataaaccgttgagactgcccatttatttatttattggaagataggggctacttattatatttatataatttagagagtggattagagagaagataataa 4981472  T
Q  344 ttagtgactaaattgatgatttattcaatatttaaattatggtgcttttaataattagtgattaacctacttttgtgcattcaaagagtacgtttaattt 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4981473 ttagtgactaaattgatgatttattcaatatttaaattatggtgcttttaataattagtgattaacctagttttgtgcattcaaagagtacgtttaattt 4981572  T
Q  444 tatcttggtatattttgtttttccctaaactgcaaa 479  Q
    ||||||||||||||||||||||||||||||||||||    
T  4981573 tatcttggtatattttgtttttccctaaactgcaaa 4981608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 42283183 - 42283136
Alignment:
Q  61 ttatcacaaaaattgtatcaaatggttgttcaaatatcactactcatt 108  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||    
T  42283183 ttatcacaaaaattgaatgaaatggttgttcaaatatcactactcatt 42283136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 3091842 - 3091923
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||          || |||||||| |||||||||||  ||||||||||||||||||||    
T  3091842 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaataattgttcaaatatcactactc 3091923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 13104580 - 13104661
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||          || ||||||||||||| ||| ||||||||||||||| ||||||||    
T  13104580 cattgtttttgaccaatgaaaagagagaaaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactc 13104661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 14714127 - 14714169
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  14714127 tcacaaaaattgtctcaaatggatgttcaaatatcactactca 14714169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 32750099 - 32750180
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||          || ||||||||||||| ||| ||||||||||||||| ||||||||    
T  32750099 cattgtttttgaccaatgaaaagagagaaaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactc 32750180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 7086093 - 7086013
Alignment:
Q  25 attgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||||||||||||||||||          || ||||||||||||| ||| ||||||||||||||| ||||||||    
T  7086093 attgtttttgaccaatgaaaagagagagaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactc 7086013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 9202442 - 9202406
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactact 104  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9202442 aaaaattgtatgaaatggttgttcaaatatcactact 9202406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 34138963 - 34138923
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  34138963 caaaagttgtatgaaatggttgttcaaatatcactactcat 34138923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 7428572 - 7428611
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  7428572 caaaaattgtatgaaatggttgttcaaatatcactgctca 7428611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 11164346 - 11164265
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||| ||||||||||||||||          || |||||||| ||||||||||| |||||||||||||||| ||||    
T  11164346 cattgtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 11164265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 135
Target Start/End: Original strand, 4981230 - 4981259
Alignment:
Q  106 attttaaaatagagaagtcaattccattag 135  Q
    ||||||||||||||||||||||||||||||    
T  4981230 attttaaaatagagaagtcaattccattag 4981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 12066065 - 12066098
Alignment:
Q  75 gtatcaaatggttgttcaaatatcactactcatt 108  Q
    ||||||| ||||||||||||||||||||||||||    
T  12066065 gtatcaattggttgttcaaatatcactactcatt 12066098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 34249722 - 34249763
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  34249722 tcacaaaaattgtctcatatggttgttcaaataacactactc 34249763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 36133115 - 36133156
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| |||||| |||| |||||||||||||||||||||    
T  36133115 tcacaaaagttgtatgaaatagttgttcaaatatcactactc 36133156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 45693393 - 45693352
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactcattt 109  Q
    |||| |||| ||||||||||||| ||||||||||||||||||    
T  45693393 aaaagttgtctcaaatggttgtttaaatatcactactcattt 45693352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 5455380 - 5455340
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    ||||| |||||| |||||||||||||||||| |||||||||    
T  5455380 caaaagttgtataaaatggttgttcaaatattactactcat 5455340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 11229248 - 11229208
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    ||||| |||| | ||||||||||||||||||||||||||||    
T  11229248 caaaagttgtctaaaatggttgttcaaatatcactactcat 11229208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 12600189 - 12600233
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactcatt 108  Q
    |||||||| |||||| |||| |||||||||||||||||| |||||    
T  12600189 tcacaaaagttgtatgaaatagttgttcaaatatcactattcatt 12600233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 19913935 - 19913967
Alignment:
Q  73 ttgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||| ||||||||||||||||||||||||||    
T  19913935 ttgtatgaaatggttgttcaaatatcactactc 19913967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 23258133 - 23258214
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||          || ||||||||||||| ||||||||||||||||||||||||||||    
T  23258133 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaaattgtttcaaatggttgttcaaatatcactactc 23258214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 9047001 - 9046956
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactcattt 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  9047001 tcacaaaaattgtatcaaatagttgttcaaatatcactactcattt 9046956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 28927782 - 28927863
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||          || ||||||||||| ||||||||||||||||||||||||| ||||    
T  28927782 cattgtttttgaccaatgaaaagagagagaaaagaagttgtcacaaaaattttatcaaatggttgttcaaatatcaccactc 28927863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 40413333 - 40413252
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||||| |||||||||||||          |||||| |||| |||||||||||||||||||||||||||||||||    
T  40413333 cattgtttttgactaatgaaaagagagaaaaaagaagttatcataaaagttgtatcaaatggttgttcaaatatcactactc 40413252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 37101611 - 37101573
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  37101611 aaaaattgtatgaaatggttgttcaaatatcactactca 37101573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 5502503 - 5502544
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  5502503 tcacaaaaattatatcaaatgattgttcaaatatcactactc 5502544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 40842074 - 40842106
Alignment:
Q  73 ttgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||||||||    
T  40842074 ttgtatcaaatggttgttcaaatatcactactc 40842106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 34474095 - 34474142
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcattttaaaa 114  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||    
T  34474095 caaaagttgtatgaaatggttgttcaaatatcattactctttttaaaa 34474142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 38128496 - 38128418
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcacta 102  Q
    ||||||||||||||||||||||| |||          || ||||||||||||| | |||||||||||||||||||||||    
T  38128496 cattgtttttgaccaatgaaaagtgagaaaaaagaagttgtcacaaaaattgtttaaaatggttgttcaaatatcacta 38128418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 1370222 - 1370184
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  1370222 caaaaattgtctcaaatggatgttcaaatatcactactc 1370184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 11879416 - 11879378
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  11879416 caaaaattgtatgaaatggtttttcaaatatcactactc 11879378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 11896832 - 11896794
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  11896832 caaaaattgtatgaaatggtttttcaaatatcactactc 11896794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 30925581 - 30925543
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  30925581 caaaagttgtataaaatggttgttcaaatatcactactc 30925543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 39719168 - 39719130
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  39719168 caaaaattgtctcaaatggttgttaaaatatcactactc 39719130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 45101540 - 45101578
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  45101540 caaaagttgtatgaaatggttgttcaaatatcactactc 45101578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 21273640 - 21273599
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| |||||| |||| |||||||||||||||||||||    
T  21273640 tcacaaaagttgtatgaaatagttgttcaaatatcactactc 21273599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 42768047 - 42768010
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  42768047 aaaaattgtatgaaatgtttgttcaaatatcactactc 42768010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 12142025 - 12142075
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactcattttaaaa 114  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  12142025 tcacaaaagttgtatcaaatggttgttcaaatatcactactcattgtaaaa 12142075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 46651773 - 46651859
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcatttt 110  Q
    |||||||||||||||||||||||||||          || |||||| |||||||||| |||||||||||||||||||||||| ||||    
T  46651773 cattgtttttgaccaatgaaaagagagaaaatagaagttgtcacaagaattgtatcatatggttgttcaaatatcactactcttttt 46651859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 43445548 - 43445589
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  43445548 tcacaaaaattgtatcaaatgattgttcaaatatcactactc 43445589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 8792530 - 8792483
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactcatttta 111  Q
    |||||||| ||||||||||||||||||||||||||| ||||| |||||    
T  8792530 tcacaaaagttgtatcaaatggttgttcaaatatcattactcttttta 8792483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 21858885 - 21858932
Alignment:
Q  61 ttatcacaaaaattgtatcaaatggttgttcaaatatcactactcatt 108  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||||    
T  21858885 ttatcacaaaagttgtttaaaatggttgttcaaatatcactactcatt 21858932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 5978680 - 5978761
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||          || |||||| | |||||||| ||||||||||||||||||||||||    
T  5978680 cattgtttttgaccaatgaaaagagagaaaatagaagttgtcacaagagttgtatcatatggttgttcaaatatcactactc 5978761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 10591293 - 10591335
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    |||||||| |||| |||||||||||||||||||||||||||||    
T  10591293 tcacaaaagttgtctcaaatggttgttcaaatatcactactca 10591335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 21839061 - 21839023
Alignment:
Q  66 acaaaaattgtatcaaatggttgttcaaatatcactact 104  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  21839061 acaaaaattgtatcaaatagttgttcaaatatcactact 21839023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 7390701 - 7390652
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcattttaaaata 116  Q
    |||||||||||| |||||||||||||||||||| | ||||| ||||||||    
T  7390701 caaaaattgtatgaaatggttgttcaaatatcaatcctcatattaaaata 7390652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 40717169 - 40717125
Alignment:
Q  64 tcacaaaaa-ttgtatcaaatggttgttcaaatatcactactcat 107  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||    
T  40717169 tcacaaaaagttgtatgaaatggttgttcaaatatcactactcat 40717125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 32171059 - 32171024
Alignment:
Q  70 aaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||| ||||||||||||||||||||||||||||    
T  32171059 aaattgtctcaaatggttgttcaaatatcactactc 32171024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 7807199 - 7807237
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  7807199 caaaagttgtatgaaatggttgttcaaatatcactactc 7807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 37351960 - 37351879
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||||||||| |||||||||          || |||||||| || ||||||||| ||||||||||||||||||||    
T  37351960 cattgtttttgaccaataaaaagagagaaaaaagaaattgtcacaaaagttatatcaaatgattgttcaaatatcactactc 37351879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 44894444 - 44894363
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||| ||||||||||||||||          || ||||||||||| | |||||||| |||||||||||||||||||    
T  44894444 cattgttttttaccaatgaaaagagagataaaagaagttgtcacaaaaattatctcaaatggatgttcaaatatcactactc 44894363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 6353870 - 6353911
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| ||||||||||| ||| |||||||||||||||||    
T  6353870 tcacaaaagttgtatcaaatagtttttcaaatatcactactc 6353911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 40842551 - 40842592
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcatt 108  Q
    ||||| |||||| |||||||||||||||||||| ||||||||    
T  40842551 caaaagttgtatgaaatggttgttcaaatatcattactcatt 40842592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 43657147 - 43657184
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  43657147 aaaagttgtatgaaatggttgttcaaatatcactactc 43657184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 25887727 - 25887767
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    ||||| |||| | ||||||||||||||||||||||||||||    
T  25887727 caaaagttgtctaaaatggttgttcaaatatcactactcat 25887767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 32154477 - 32154441
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactac 103  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  32154477 caaaagttgtatgaaatggttgttcaaatatcactac 32154441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 36990185 - 36990221
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactact 104  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  36990185 aaaaattatatgaaatggttgttcaaatatcactact 36990221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 31275247 - 31275328
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||          || |||||||| |||||||||||||||||||||||||||||||||    
T  31275247 cattgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 31275328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 5234441 - 5234358
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    ||||||||||||||||| |||||||||          || |||||||| |||||||||||||||||||||||||||||||||||    
T  5234441 cattgtttttgaccaataaaaagagagaaaaaaaaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactcat 5234358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 47998731 - 47998781
Alignment:
Q  61 ttatcacaaaaattgtatcaaatggttgttcaaatatcactactcatttta 111  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  47998731 ttatcacaaaagttgtatcaaatgattgttcaaatatcactactcttttta 47998781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 55927085 - 55927166
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||          || ||||||||||||| |||||||| |||||||||||||||||||    
T  55927085 cattgtttttgaccaatgaaaagagagagaaaagaaattgtcacaaaaattgtctcaaatggatgttcaaatatcactactc 55927166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 38952790 - 38952873
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    |||||||||||||||||||||| ||||          |||||||||||||||||||||||  ||||| ||||||||||||||||    
T  38952790 cattgtttttgaccaatgaaaaaagagaaaaaagaaattatcacaaaaattgtatcaaataattgtttaaatatcactactcat 38952873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 1580213 - 1580166
Alignment:
Q  64 tcacaaaaa-ttgtatcaaatggttgttcaaatatcactactcatttt 110  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  1580213 tcacaaaaagttgtatgaaatggttgttcaaatatcactactcatttt 1580166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 42915149 - 42915102
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactcatttta 111  Q
    |||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  42915149 tcacaaaagttgtatcaaatagttgttcaaatatcactactcttttta 42915102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 9567617 - 9567580
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactact 104  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9567617 caaaaattgtataaaatggttgttcaaatatcactact 9567580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 25523165 - 25523085
Alignment:
Q  25 attgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||||||||||||||||||          ||||||||||| |||| ||| ||||||||||||||| ||||||||    
T  25523165 attgtttttgaccaatgaaaagagagagaaaataagttatcacaaaagttgtctcatatggttgttcaaataacactactc 25523085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 51389457 - 51389494
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcact 101  Q
    |||||||| |||||||||||||||||||||||||||||    
T  51389457 tcacaaaagttgtatcaaatggttgttcaaatatcact 51389494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 41609602 - 41609558
Alignment:
Q  64 tcacaaaaattgt-atcaaatggttgttcaaatatcactactcat 107  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||    
T  41609602 tcacaaaaattgtcatcaaatggttgttcaaatatcattactcat 41609558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 41951680 - 41951720
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  41951680 caaaaattatatgaaatggttgttcaaatatcactactcat 41951720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 15596537 - 15596579
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    |||||||| |||| | |||||||||||||||||||||||||||    
T  15596537 tcacaaaagttgtttaaaatggttgttcaaatatcactactca 15596579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 22257123 - 22257085
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  22257123 caaaagttgtatgaaatggttgttcaaatatcactactc 22257085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 31240793 - 31240831
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  31240793 caaaagttgtatgaaatggttgttcaaatatcactactc 31240831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 31658020 - 31658101
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||||||||||||||| |||          || ||||||||  ||||||||||||||||||||||||| ||||||    
T  31658020 cattgtttttgaccaatgaaaagtgagaaaaaagaagttgtcacaaaagctgtatcaaatggttgttcaaatatcgctactc 31658101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 36444365 - 36444284
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||| ||||          || |||||| |||||||||| ||| ||||||||||||||||||||    
T  36444365 cattgtttttgaccaatgaaaaaagagaaaatagaagttgtcacaagaattgtatcatatgattgttcaaatatcactactc 36444284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 36792477 - 36792515
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  36792477 caaaagttgtatgaaatggttgttcaaatatcactactc 36792515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 1033289 - 1033330
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| |||| | ||||||||||||||||||||||||||    
T  1033289 tcacaaaagttgtttaaaatggttgttcaaatatcactactc 1033330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 2613547 - 2613502
Alignment:
Q  64 tcacaaaaattgt-atcaaatggttgttcaaatatcactactcatt 108  Q
    |||||||| |||| ||||||||||||||||||||||| ||||||||    
T  2613547 tcacaaaagttgttatcaaatggttgttcaaatatcattactcatt 2613502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 30973728 - 30973765
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  30973728 aaaaattgtatgaaatagttgttcaaatatcactactc 30973765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 36408134 - 36408093
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| ||||||||||| |||||||||||||||| ||||    
T  36408134 tcacaaaagttgtatcaaatagttgttcaaatatcaccactc 36408093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 36413257 - 36413216
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| ||||||||||| |||||||||||||||| ||||    
T  36413257 tcacaaaagttgtatcaaatagttgttcaaatatcaccactc 36413216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 46173678 - 46173719
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| ||||||||||||||| ||||||||||| |||||    
T  46173678 tcacaaaagttgtatcaaatggttattcaaatatcattactc 46173719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 48372151 - 48372114
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  48372151 aaaaattgtatgaaatagttgttcaaatatcactactc 48372114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 6953314 - 6953274
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    ||||| |||||  ||||||||||||||||||||||||||||    
T  6953314 caaaagttgtaagaaatggttgttcaaatatcactactcat 6953274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 38960587 - 38960547
Alignment:
Q  67 caaaaattgtatcaaatg-gttgttcaaatatcactactca 106  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  38960587 caaaaattgtatcaaaagagttgttcaaatatcactactca 38960547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 7231976 - 7231895
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||          || |||||||| |||||||||||||||||||||||||||||||||    
T  7231976 cattgtttttgaccaatgaaaagagagaaaaaataaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 7231895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 29706004 - 29706087
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    |||||||||| ||||||||||||||||          || |||||||| ||||||||||| |||||||||||||||||||||||    
T  29706004 cattgttttttaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactcat 29706087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 28300615 - 28300533
Alignment:
Q  25 attgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    ||||||||||||||||||||||||||          || |||||| | |||||||| ||||||||||||||||||||||||||    
T  28300615 attgtttttgaccaatgaaaagagagaaaataaaagttgtcacaagagttgtatcatatggttgttcaaatatcactactcat 28300533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 11173551 - 11173624
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatat 97  Q
    |||||||||||||||||||||||||||          || |||||||| |||||||||||||||||||||||||    
T  11173551 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatat 11173624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 46473229 - 46473310
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||          || ||| |||| ||||||||||||||||||||||||||| |||||    
T  46473229 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcataaaagttgtatcaaatggttgttcaaatatcattactc 46473310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 9028014 - 9028051
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcact 101  Q
    |||||||||| |||||||||||||||||||||||||||    
T  9028014 tcacaaaaatcgtatcaaatggttgttcaaatatcact 9028051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 32457679 - 32457642
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||| |||||||||||||||||||||    
T  32457679 aaaaattgtatcaaatagttgttcaaatatcactactc 32457642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 44695150 - 44695191
Alignment:
Q  61 ttatcacaaaaattgtatcaaatggttgttcaaatatcacta 102  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  44695150 ttatcacaaaagttgtatgaaatggttgttcaaatatcacta 44695191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 48649682 - 48649765
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    |||||||||||||||||||||| ||||          |||||||||||||| | ||| ||||||||||||||| ||||||||||    
T  48649682 cattgtttttgaccaatgaaaaaagagagaaaataagttatcacaaaaattatctcatatggttgttcaaataacactactcat 48649765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 41957614 - 41957696
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    ||||||||||||||||||||||| |||          ||||||||||| |||| | ||||||||||| |||||||||||||||    
T  41957614 cattgtttttgaccaatgaaaagtgagaaaaaagaaattatcacaaaagttgtttaaaatggttgtttaaatatcactactca 41957696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 44365218 - 44365172
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcattttaaaa 114  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||||    
T  44365218 caaaaattgtataaaatggttgttcaaatatcaccactc-ttttaaaa 44365172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 49130955 - 49131033
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcacta 102  Q
    ||||||||||||| |||||||||||||          || ||||||||||||| |||||||| ||||||||||||||||    
T  49130955 cattgtttttgactaatgaaaagagagagaaaagaagttgtcacaaaaattgtctcaaatggatgttcaaatatcacta 49131033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 6126599 - 6126637
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  6126599 caaaagttgtatgaaatggttgttcaaatatcactactc 6126637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 20380859 - 20380778
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||||||||||||||| |||          || |||||||| |||| | ||||||||||||||||||||||||||    
T  20380859 cattgtttttgaccaatgaaaagtgagaaaaaagaagttgtcacaaaagttgtttaaaatggttgttcaaatatcactactc 20380778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 31997947 - 31997985
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  31997947 caaaagttgtctcaaatggttgttcaaatatcactactc 31997985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 43169681 - 43169643
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  43169681 caaaagttgtatgaaatggttgttcaaatatcactactc 43169643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 51464193 - 51464155
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  51464193 caaaagttgtataaaatggttgttcaaatatcactactc 51464155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 31249248 - 31249207
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcatt 108  Q
    ||||| |||||| |||||||||||||||||||||| ||||||    
T  31249248 caaaagttgtatgaaatggttgttcaaatatcactcctcatt 31249207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 33007502 - 33007543
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  33007502 tcacaaaaattgtctcatatggttgttcaaataacactactc 33007543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 46953094 - 46953131
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  46953094 aaaagttgtatcaaatagttgttcaaatatcactactc 46953131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 34662990 - 34662950
Alignment:
Q  66 acaaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    ||||||||| | |||||||||||||||||||||||| ||||    
T  34662990 acaaaaattatttcaaatggttgttcaaatatcactgctca 34662950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 2241759 - 2241708
Alignment:
Q  61 ttatcacaaaaattgtatcaaatggttgttcaaatatcactactcattttaa 112  Q
    ||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  2241759 ttatcacaaaagttgtatcaaatggttgttcaaatatcactattctttttaa 2241708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 32853074 - 32853031
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  32853074 tcacaaaaattgtatcaaatagttgttcaaatatcactactcat 32853031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 1434602 - 1434565
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||| |||||||||||||||||||||    
T  1434602 aaaaattgtatcaaatagttgttcaaatatcactactc 1434565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 25166770 - 25166807
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  25166770 aaaaattgtatgaaatggttgtttaaatatcactactc 25166807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 30733150 - 30733191
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| |||| ||||||||||||| ||||||||||||||    
T  30733150 tcacaaaagttgtctcaaatggttgtttaaatatcactactc 30733191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 32253922 - 32253963
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| ||||| ||||| |||||||||||||||||||||    
T  32253922 tcacaaaagttgtaccaaatagttgttcaaatatcactactc 32253963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 12187084 - 12187120
Alignment:
Q  61 ttatcacaaaaattgtatcaaatggttgttcaaatat 97  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  12187084 ttatcaaaaatattgtatcaaatggttgttcaaatat 12187120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 2117570 - 2117519
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactcattttaaaat 115  Q
    |||||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  2117570 tcacaaaagttgtatcaaatagttgttcaaatatcactactctttttaaaat 2117519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 39595375 - 39595457
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    |||||||||||||||||||||||||||          || |||||||| ||||||||||||||||||||||||||| ||||||    
T  39595375 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatcattactca 39595457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 33567209 - 33567128
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||||||||||          || |||||||| |||||||||||||||||||| ||||||||||||    
T  33567209 cattgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcatatatcactactc 33567128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 34381113 - 34381189
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcac 100  Q
    |||||||||||||||||||||||||||          || ||||||||||| |||||||||||||||||||||||||    
T  34381113 cattgtttttgaccaatgaaaagagagaaaaacgaagttgtcacaaaaattatatcaaatggttgttcaaatatcac 34381189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 125194 - 125273
Alignment:
Q  25 attgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactact 104  Q
    ||||||||||||||||||||||||||          || || ||||| ||||||||||||||||||||||||||||||||    
T  125194 attgtttttgaccaatgaaaagagagaaaaaagaagttgtcgcaaaagttgtatcaaatggttgttcaaatatcactact 125273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 40223712 - 40223672
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  40223712 caaaaattgtatgaaatggttgttcaaatatcactactcat 40223672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 12349923 - 12349966
Alignment:
Q  61 ttatcacaaaaattgtatcaaatggttgttcaaatatcactact 104  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    
T  12349923 ttatcacaaaagttgtatcaaatagttgttcaaatatcactact 12349966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 9403654 - 9403700
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactcatttt 110  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||    
T  9403654 tcacaaaagttgtatcaaatggttgtttaaatatcactactcttttt 9403700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 12718350 - 12718265
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcattt 109  Q
    |||||||||||||||||||||||| ||          || |||||||||||||   ||||||||||||||||||||||||||||||    
T  12718350 cattgtttttgaccaatgaaaagaaagagaaaagaagttgtcacaaaaattgttgaaaatggttgttcaaatatcactactcattt 12718265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 9714065 - 9714020
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactcattt 109  Q
    |||||| | |||||||| ||||||||||||||||||||||||||||    
T  9714065 tcacaagagttgtatcatatggttgttcaaatatcactactcattt 9714020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 36624419 - 36624502
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    |||||||||||||||||||||||||||          || ||| | ||||||||||||||| |||||||||||||| |||||||    
T  36624419 cattgtttttgaccaatgaaaagagagaaaatgaaaattgtcaaataaattgtatcaaatgcttgttcaaatatcattactcat 36624502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 3141640 - 3141679
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  3141640 caaaagttgtatgaaatggttgttcaaatatcactactca 3141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 24431548 - 24431505
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    |||||| | |||| ||||||||||||||||||||||||||||||    
T  24431548 tcacaatagttgtctcaaatggttgttcaaatatcactactcat 24431505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 11306840 - 11306878
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  11306840 caaaagttgtatcaaatagttgttcaaatatcactactc 11306878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 12779576 - 12779491
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcattt 109  Q
    |||||||||||||||||||||||| ||          || |||||||||||||   |||||||| |||||||||||||||||||||    
T  12779576 cattgtttttgaccaatgaaaagaaagagaaaagaagttgtcacaaaaattgttgaaaatggttattcaaatatcactactcattt 12779491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 14206534 - 14206568
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcact 101  Q
    |||||||||||| ||||||||||||||||||||||    
T  14206534 caaaaattgtatgaaatggttgttcaaatatcact 14206568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 20719985 - 20719904
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||| ||||||||||||||||||||||          || |||||||| |||| |||||||| |||||||||||||||||||    
T  20719985 cattatttttgaccaatgaaaagagagagaaaagaagttgtcacaaaagttgtctcaaatggatgttcaaatatcactactc 20719904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 21749503 - 21749541
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  21749503 caaaaattatataaaatggttgttcaaatatcactactc 21749541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 31284321 - 31284279
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcattt 109  Q
    ||||| |||||| |||||||||||||||||||||| |||||||    
T  31284321 caaaagttgtatgaaatggttgttcaaatatcactgctcattt 31284279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 43482506 - 43482540
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatc 98  Q
    |||||||||||||||||||| ||||||||||||||    
T  43482506 tcacaaaaattgtatcaaatagttgttcaaatatc 43482540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 1774212 - 1774171
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcatt 108  Q
    |||||||||| | |||| ||||||||||||||||||||||||    
T  1774212 caaaaattgtctaaaatagttgttcaaatatcactactcatt 1774171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 5130303 - 5130266
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  5130303 aaaaattgtatgaaatagttgttcaaatatcactactc 5130266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 6515360 - 6515328
Alignment:
Q  73 ttgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||| ||||||||||||||||||||||||||    
T  6515360 ttgtatgaaatggttgttcaaatatcactactc 6515328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 19127268 - 19127312
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactcatttta 111  Q
    ||||| |||| | |||||||||||||||||||||||||| |||||    
T  19127268 caaaagttgtttaaaatggttgttcaaatatcactactcttttta 19127312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 39032531 - 39032491
Alignment:
Q  67 caaaaattgtatcaaatg-gttgttcaaatatcactactca 106  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  39032531 caaaaattgtatcaaaagagttgttcaaatatcactactca 39032491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 2362510 - 2362551
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  2362510 tcacaaaaattgtatcaaatagttgttcaaatatcactactc 2362551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 40610330 - 40610412
Alignment:
Q  24 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    |||||||||||||||||||||||||||          || |||||||| |||| |||||||| ||||||||||||||||||||    
T  40610330 cattgtttttgaccaatgaaaagagagagaaaagaagttgtcacaaaagttgtctcaaatggatgttcaaatatcactactca 40610412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 5304757 - 5304719
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  5304757 caaaaattgtatgaaatggttgttcaaatatcactactc 5304719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 28716284 - 28716325
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  28716284 tcacaaaagttgtctcaaatggttgttcaaatatcactactc 28716325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 49453618 - 49453659
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  49453618 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 49453659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 4638069 - 4638108
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  4638069 caaaagttgtatgaaatggttgttcaaatatcactactca 4638108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 7645480 - 7645441
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactcat 107  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  7645480 aaaaattgtctcaaatggatgttcaaatatcactactcat 7645441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 18959148 - 18959187
Alignment:
Q  67 caaaaattgtatcaaatggttgttc-aaatatcactactc 105  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  18959148 caaaaattgtatcaaatggttgttcaaaatatcactactc 18959187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 51703045 - 51703002
Alignment:
Q  61 ttatcacaaaaattgtatcaaatggttgttcaaatatcactact 104  Q
    ||||||||||| |||| | |||||||||||||||||||||||||    
T  51703045 ttatcacaaaagttgtctgaaatggttgttcaaatatcactact 51703002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 8391266 - 8391228
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  8391266 caaaaattgtatgaaatggttgttcagatatcactactc 8391228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 31480061 - 31480023
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  31480061 caaaaattgtatgaaatagttgttcaaatatcactactc 31480023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 48872878 - 48872840
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  48872878 caaaagttgtatgaaatggttgttcaaatatcactactc 48872840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 49425880 - 49425918
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  49425880 caaaagttgtatgaaatggttgttcaaatatcactactc 49425918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 37843365 - 37843324
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  37843365 tcacacaaattatatcaaatagttgttcaaatatcactactc 37843324  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 47187618 - 47187573
Alignment:
Q  61 ttatcacaaaaattgtatcaaatggttgttcaaatatcactactca 106  Q
    |||||||||||||||| | |||||||||| ||||||||||| ||||    
T  47187618 ttatcacaaaaattgtttaaaatggttgtccaaatatcactgctca 47187573  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 51571567 - 51571608
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| |||||| ||||||||||||||||||||| ||||    
T  51571567 tcacaaaagttgtattaaatggttgttcaaatatcacaactc 51571608  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 12708258 - 12708290
Alignment:
Q  85 gttgttcaaatatcactactcattttaaaatag 117  Q
    ||||| |||||||||||||||||||||||||||    
T  12708258 gttgtacaaatatcactactcattttaaaatag 12708290  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 12717803 - 12717835
Alignment:
Q  85 gttgttcaaatatcactactcattttaaaatag 117  Q
    ||||| |||||||||||||||||||||||||||    
T  12717803 gttgtacaaatatcactactcattttaaaatag 12717835  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 27687455 - 27687415
Alignment:
Q  61 ttatcacaaaaattgtatcaaatggttgttcaaatatcact 101  Q
    ||||||||||| ||||||||||  |||||||||||||||||    
T  27687455 ttatcacaaaagttgtatcaaacagttgttcaaatatcact 27687415  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 37516059 - 37516095
Alignment:
Q  71 aattgtatcaaatggttgttcaaatatcactactcat 107  Q
    |||||| |||| |||||||||||||||||||||||||    
T  37516059 aattgtctcaagtggttgttcaaatatcactactcat 37516095  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 36142 - 36184
Alignment:
Q  64 tcacaaaaa-ttgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  36142 tcacaaaaagttgtatcaaatggttgttcaaatatcactactc 36184  T

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Target: scaffold0204 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 27485 - 27522
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  27485 aaaaattgtatgaaatggttgttcaaatatcactactc 27522  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 396007 - 396044
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  396007 aaaaattgtatgaaatggttgttcaaatatcactactc 396044  T

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Target: scaffold0449 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 7976 - 8019
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactcatttta 111  Q
    ||||||||||||||||  |||||||||||||||||||| |||||    
T  7976 aaaaattgtatcaaataattgttcaaatatcactactcttttta 8019  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 6961 - 6999
Alignment:
Q  67 caaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  6961 caaaagttgtataaaatggttgttcaaatatcactactc 6999  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 15119 - 15078
Alignment:
Q  64 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||||||| ||||| ||||| |||||||||||||||||||||    
T  15119 tcacaaaagttgtaccaaatagttgttcaaatatcactactc 15078  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 18148 - 18185
Alignment:
Q  68 aaaaattgtatcaaatggttgttcaaatatcactactc 105  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  18148 aaaagttgtatcaaatagttgttcaaatatcactactc 18185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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