View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8293_high_8 (Length: 468)
Name: NF8293_high_8
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8293_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 5033913 - 5033505
Alignment:
| Q |
18 |
catcttaatgttgaaataagcaa-taataaaaaggcaacataactataaaaccatataagatgtggtaaacagcaacaacattccttaagtgaaaactaa |
116 |
Q |
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| T |
5033913 |
catcttaatgttgaaataagcaaataataaaaaggcaacataactataaaaccatataagatgtggtaaacagcaacaacattccttaagtgaaaactaa |
5033814 |
T |
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| Q |
117 |
ttgattattgacttgagtatggtttcacttcatcacataccttaattgcattcgttgcaaagttgaggatgaaatcactctcctcaagtctttcatcaaa |
216 |
Q |
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| T |
5033813 |
ttgattattgacttgagtatggtttcacttcatcacataccttaattgcattcgttgcaaagttgaggatgaaatcactctcctcaagtctttcatcaaa |
5033714 |
T |
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| Q |
217 |
caccttaattgcaactcataaaaatcaatgtgtcattgccatgaaaa----aggtgcata-taaaaggtgaaatttagtttatgtagttaaaatctgttg |
311 |
Q |
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| T |
5033713 |
caccttaattgcaactcataaaaatcaatgtgtcattgccatgaaaaatagaattgcatattaaaaggtgaaatttagtttatgtagttaaaatctgttg |
5033614 |
T |
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| Q |
312 |
tagaaaactagtctatgagagactcgtatggctaagtgtcagataatttcaaccttaacctagtgattagctaaaacaattctcagctcatacaagaaga |
411 |
Q |
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| T |
5033613 |
tagaaaacttgtctatgagagactcgtatggccaagtgtcagataatttcaaccttaacctagtgattagctaaaacaattcttagctcatacaagaaga |
5033514 |
T |
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| Q |
412 |
aatagtctt |
420 |
Q |
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| T |
5033513 |
aatagtctt |
5033505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 5033487 - 5033440
Alignment:
| Q |
408 |
aagaaatagtctttatactcatgctgcgagacattactaaactttctc |
455 |
Q |
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| T |
5033487 |
aagaaatagtctttatactcatgctgcgagacattactaaactttctc |
5033440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 5026368 - 5026413
Alignment:
| Q |
273 |
taaaaggtgaaatttagtttatgtagttaaaatctgttgtagaaaa |
318 |
Q |
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| T |
5026368 |
taaaaggtgaaatttattttatgtaattaacatctgttgtagaaaa |
5026413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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