View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8293_high_9 (Length: 415)
Name: NF8293_high_9
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8293_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 26886165 - 26885785
Alignment:
| Q |
17 |
caatttttaacaactatgtcatcaagatcttgttcactttcatacttgcctagacttccgacattaatttcatgaccaaaaccacaaaaacatttaaaat |
116 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26886165 |
caatttttaacaactatgtcatcaagatcttattcactttcatacttgcctagacttccgacattaatttcatgaccaaaaccacaaaaacatttaaaat |
26886066 |
T |
|
| Q |
117 |
tcgaacattcctagtacctgagagtatagtaatgcaatgatcaccaatttcaatgttcacatttgttatatttattcccataatcatgatgtggtgttac |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26886065 |
tcgaacattcctagtacctgagagcatagtaatgcaatgatcaccaatttcaatgttcacatttgttatatttattcccataatcatgatgtggtgttac |
26885966 |
T |
|
| Q |
217 |
taataacttttttaagctaaaatatatcaaaaagaacaagcattaagtttgnnnnnnnnnnnnnnnnnnnnagtacaaagtttgttttgcttctaatact |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
26885965 |
taataacttttttaagctaaaatatatcgaaaagaacaaggattaagtttgttttgcttttttccttttttagtacaaagtttgttttgcttctaatact |
26885866 |
T |
|
| Q |
317 |
aatgatttgattttaaggaatttattgcttgtaatattactccaataattagttgtacattttttctactatagagcgtgtgtgc |
401 |
Q |
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||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
26885865 |
aataatttgattttaagga----attggttgtaatattactccaataattggttgtacattttttctattaaagagcgtgtgtgc |
26885785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 194 - 402
Target Start/End: Complemental strand, 26883184 - 26882976
Alignment:
| Q |
194 |
ccataatcatgatgtggtgttactaataacttttttaagctaaaatatatcaaaaagaacaagcattaagtttgnnnnnnnnnnnnnnnnnnnnagtaca |
293 |
Q |
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| T |
26883184 |
ccataatcatgatgtggtgttactaataacttttttaagataaaatatatcaaaaagaacaagcattaagtttgttttgcttttttctttttttagtaca |
26883085 |
T |
|
| Q |
294 |
aagtttgttttgcttctaatactaatgatttgattttaaggaatttattgcttgtaatattactccaataattagttgtacattttttctactatagagc |
393 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| || ||||| |
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| T |
26883084 |
aagtttgttttgcttgtaatactaatgatttgattttaaggaatttattgcttgtaatattattccaataattggttctacattttttctattaaagagc |
26882985 |
T |
|
| Q |
394 |
gtgtgtgcg |
402 |
Q |
| |
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||| ||||| |
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| T |
26882984 |
gtgcgtgcg |
26882976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 26883758 - 26883623
Alignment:
| Q |
17 |
caatttttaacaactatgtcatcaagatcttgttcactttcatacttgcctagacttccgacattaatttcatgaccaaaaccaca-aaaacatttaaaa |
115 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| |||| |||| ||| |
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| T |
26883758 |
caatttgtaacaattatgtcatcaagatcttgttcactttcatacttaccaagacttccgacactaatttcatgaccaaaaccacaaaaaatatttgaaa |
26883659 |
T |
|
| Q |
116 |
ttcgaacattcctagtacctgagagtatagtaatgc |
151 |
Q |
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||||||||||| |||||| |||||| |||||||||| |
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| T |
26883658 |
ttcgaacattcgtagtacttgagagcatagtaatgc |
26883623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 26884458 - 26884323
Alignment:
| Q |
17 |
caatttttaacaactatgtcatcaagatcttgttcactttcatacttgcctagacttccgacattaatttcatgaccaaaaccaca-aaaacatttaaaa |
115 |
Q |
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|
|||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| ||||||||| ||||||||| ||| |
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| T |
26884458 |
caatttgtaacaattatgtcatcaagatcttgttcactttcatacttaccaagacttccgacactaatttcatgacaaaaaccacaaaaaacatttgaaa |
26884359 |
T |
|
| Q |
116 |
ttcgaacattcctagtacctgagagtatagtaatgc |
151 |
Q |
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||||||||||| |||||| |||||| |||||||||| |
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| T |
26884358 |
ttcgaacattcgtagtacttgagagcatagtaatgc |
26884323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 11532522 - 11532343
Alignment:
| Q |
17 |
caatttttaacaactatgtcatcaagatcttgttcactttcatacttgcctagacttccgacattaatttcatgaccaaaaccacaaaaa-catttaaaa |
115 |
Q |
| |
|
||||| |||||||| |||||||||| ||||| ||||| ||||| | || |||||||||||| ||||| |||||||| |||||||||| ||| | ||| |
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| T |
11532522 |
caattcttaacaacaatgtcatcaatatcttcttcaccttcattcccaccaagacttccgacactaattccatgaccaggaccacaaaaaacatctgaaa |
11532423 |
T |
|
| Q |
116 |
ttcgaacattcctagtacctgagagtatagtaatgcaatgatcaccaatttcaatgttcacatttgttatatttattccc |
195 |
Q |
| |
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||||||||||||||||||||||||| |||| |||||||| ||| || || ||||||||||| ||| |||||||||||| |
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| T |
11532422 |
ttcgaacattcctagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttattccc |
11532343 |
T |
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