View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8293_low_10 (Length: 438)
Name: NF8293_low_10
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8293_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 32423724 - 32424140
Alignment:
| Q |
1 |
tttggtggtcgaggggttcaagcacattgtcgtttccacttctggggcatttgttttgtagagactttctaaataaggagtcaacgttggagtcattgta |
100 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32423724 |
tttgatggtcgaggggttcaagcacattgtcatttccacttctggggcatttgttttgtagagactttctaaataaggagtcaacgttggagtcattgta |
32423823 |
T |
|
| Q |
101 |
gatgtgtgctcgaaattgtacacatctagctaggccaattgtatgtgcacctgttattcaagatacactcaattgagttgaaacatagtactaatattgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32423824 |
gatgtgtgctcgaaattgtacacatctagctaggccaattgtatgtgcacctgttattcaagatacactcaattgagttgaaaca--gtactaatattgg |
32423921 |
T |
|
| Q |
201 |
acattaattgaaggcgccttaattgaatgccaaattcttcttactgagaattttttaataaagttgtggtcatgaatcatgataaagcattaatatattg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32423922 |
acattaattgaaggcgccttaattgaatgccaaattcttcttactgagaatttttgaataaagttgtggtcatgaatcatgataaagcattaatatatag |
32424021 |
T |
|
| Q |
301 |
ggatactgtggtacctgaaagagccaccaagtccttagctgagagtccttggttagcaaaatttgttttgagagcgcttagattgagaaatggtgcagga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32424022 |
ggatactgtggtacctgaaagagccaccaagtccttagctgagagtccttggttagcaaaatttgttttgagagcgcttagattgagaaatggtgcagga |
32424121 |
T |
|
| Q |
401 |
attgagttattggcatcag |
419 |
Q |
| |
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||||||||||||||||||| |
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| T |
32424122 |
attgagttattggcatcag |
32424140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 419
Target Start/End: Original strand, 32430836 - 32431228
Alignment:
| Q |
8 |
gtcgaggggttcaagcacattgtcgtttccacttctggggcatttgttttgtagagactttctaaataaggagtcaacgttggagtcattgtagatgtgt |
107 |
Q |
| |
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||||| |||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| |
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| T |
32430836 |
gtcgaagggttcgaggacattgtcatttccacttctggggcacttgttttgtagagactttctaaacaaggggtcaacgttggagtcattgtaaatgtgt |
32430935 |
T |
|
| Q |
108 |
gctcgaaattgtacacatctagctaggccaattgtatgtgcacctgttattcaagatacactcaattgagttgaaacatagtactaatattggacattaa |
207 |
Q |
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||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| ||| |
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| T |
32430936 |
gctcgaaattgtacacatcgagcgagaccaattgtatgtgcacctgatattcaagatatactcaattgaattgaaacatagtactaatattgaaca---- |
32431031 |
T |
|
| Q |
208 |
ttgaaggcgccttaattgaatgccaaattcttcttactgagaattttttaataaagttgtggtcatgaatcatgataaagcattaatatattgggatact |
307 |
Q |
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||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
32431032 |
-----------ttaattgaatgtcaaattcttcttcgagagaatttttgaataaagttgtggtcatgaatcatgataaagcattaata----ggaatact |
32431116 |
T |
|
| Q |
308 |
gtggtacctgaaagagccaccaagtccttagctgagagtccttggttagcaaaatttgttttgagagcgcttagattgagaaatggtgcaggaattgagt |
407 |
Q |
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||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| |
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| T |
32431117 |
atggtacctgaaagagccaccaagtcctcaactgagagcccttggttagcaaaatttgttttgagagtgcttagattgaaaaagggtgcaggaattgagt |
32431216 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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