View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8293_low_12 (Length: 401)

Name: NF8293_low_12
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8293_low_12
NF8293_low_12
[»] chr2 (13 HSPs)
chr2 (16-325)||(11312052-11312362)
chr2 (16-193)||(7395722-7395889)
chr2 (32-239)||(7384792-7384988)
chr2 (36-302)||(23453509-23453780)
chr2 (225-302)||(18557456-18557533)
chr2 (154-302)||(25232095-25232244)
chr2 (117-303)||(19084540-19084730)
chr2 (179-303)||(44117300-44117428)
chr2 (206-302)||(16443196-16443293)
chr2 (206-304)||(26195476-26195575)
chr2 (154-259)||(25225790-25225896)
chr2 (226-300)||(17830674-17830749)
chr2 (350-382)||(11312387-11312419)
[»] chr5 (10 HSPs)
chr5 (16-303)||(28663553-28663841)
chr5 (16-258)||(19699347-19699594)
chr5 (16-303)||(17935464-17935752)
chr5 (163-303)||(29742059-29742198)
chr5 (155-202)||(24228309-24228356)
chr5 (193-302)||(29948340-29948450)
chr5 (160-241)||(18079943-18080023)
chr5 (16-52)||(17945752-17945788)
chr5 (214-303)||(25590113-25590203)
chr5 (169-237)||(40786726-40786794)
[»] chr1 (12 HSPs)
chr1 (16-193)||(26023376-26023553)
chr1 (16-132)||(26028693-26028809)
chr1 (154-302)||(27317702-27317850)
chr1 (185-302)||(18643142-18643260)
chr1 (193-256)||(18188138-18188202)
chr1 (16-77)||(18188307-18188364)
chr1 (160-251)||(145352-145442)
chr1 (185-275)||(18640452-18640543)
chr1 (160-204)||(29547858-29547902)
chr1 (154-204)||(29530197-29530247)
chr1 (214-302)||(5032474-5032562)
chr1 (156-240)||(15552966-15553049)
[»] scaffold0248 (1 HSPs)
scaffold0248 (16-199)||(16080-16263)
[»] chr6 (7 HSPs)
chr6 (29-302)||(17190645-17190917)
chr6 (16-181)||(23600001-23600169)
chr6 (83-239)||(17275084-17275240)
chr6 (64-232)||(17270156-17270330)
chr6 (16-196)||(11302144-11302326)
chr6 (160-302)||(25398217-25398359)
chr6 (154-240)||(19441127-19441214)
[»] chr8 (10 HSPs)
chr8 (16-193)||(10733940-10734106)
chr8 (16-193)||(10738972-10739142)
chr8 (160-302)||(23429686-23429828)
chr8 (16-75)||(17909750-17909809)
chr8 (154-303)||(29185461-29185611)
chr8 (111-200)||(17703002-17703091)
chr8 (206-303)||(22274878-22274975)
chr8 (214-303)||(28350493-28350583)
chr8 (225-302)||(12642365-12642443)
chr8 (29-118)||(17702402-17702491)
[»] chr4 (6 HSPs)
chr4 (16-202)||(28874100-28874275)
chr4 (163-274)||(20679210-20679319)
chr4 (228-305)||(8563635-8563713)
chr4 (209-302)||(20354990-20355082)
chr4 (226-303)||(17349991-17350070)
chr4 (208-303)||(12753604-12753699)
[»] chr3 (5 HSPs)
chr3 (29-212)||(7117113-7117295)
chr3 (106-193)||(38419851-38419938)
chr3 (162-303)||(20463052-20463193)
chr3 (154-308)||(10937381-10937535)
chr3 (180-259)||(3170086-3170165)
[»] chr7 (7 HSPs)
chr7 (155-302)||(35338893-35339041)
chr7 (160-302)||(42939884-42940025)
chr7 (156-302)||(20125314-20125460)
chr7 (246-302)||(7578727-7578783)
chr7 (209-259)||(8048936-8048986)
chr7 (206-275)||(42937629-42937698)
chr7 (36-84)||(29332703-29332751)
[»] scaffold0081 (1 HSPs)
scaffold0081 (29-121)||(7780-7872)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 11312052 - 11312362
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  11312052 atgaataaatgaaaatatgatgtggatgtacattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattgacatt 11312151  T
Q  116 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctaca-ttgtcatgtaaagaacacacttgaagagtaatata 214  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11312152 tagtctcatggctcttcatgtaattgtaaggtacaacttttgtatcctataaataggatctacatttgtcatgtaaagaacacacttgaagagtaatata 11312251  T
Q  215 atatactctcttgttctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataacactaatttactag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  11312252 atatactctcttgttctctctttatcccttttctctactcttctatattgtacaatatcttataatactttggatcaatttcataacactaatttaccac 11312351  T
Q  315 gaaaagaaaac 325  Q
     ||||||||||    
T  11312352 taaaagaaaac 11312362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 7395889 - 7395722
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||          |||| |||||    
T  7395889 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatattccttaactactatgattaaatgactt----------tattgatatt 7395800  T
Q  116 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaaga 193  Q
    ||||||||| |||||||||||||||  |||   ||||||||||||||||||||||||| |||||||||||||||||||    
T  7395799 tagtctcatagctcttcatgtaattagaagacgcaacttttgtatcctataaataggacctacattgtcatgtaaaga 7395722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 239
Target Start/End: Complemental strand, 7384988 - 7384792
Alignment:
Q  32 atgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttagtctcatcgctctt 131  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||| |||||||| ||          |||||||||||| ||||||    
T  7384988 atgatgtggatgtccattgtccctagaccttctatatttcttaactaatatgactaaatgactttattgat----------atttagtctcatggctctt 7384899  T
Q  132 catgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttct 231  Q
    |||||||||| ||| |||||||||||||| |||||||||||| |||||||  ||| ||||| ||| ||||||  || |||| ||||||||||  | ||||    
T  7384898 catgtaattgaaagttacaacttttgtattctataaataggacctacattaccatataaag-acatacttgagaagcaatacaatatactcttatattct 7384800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 36 - 302
Target Start/End: Original strand, 23453509 - 23453780
Alignment:
Q  36 tgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttagtctcatcgctcttcatg 135  Q
    |||| ||||||||| | ||||| | |||||||||||||||||  | |||   ||| |||||||| |||  |||| | |||||| || ||  || ||||||    
T  23453509 tgtgaatgtccatttttcctaggctttctatatcccttaactcatttgagcgaatgactttattcattgttattgacatttagccttatgactattcatg 23453608  T
Q  136 taattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatata----atatactctcttgttct 231  Q
    || ||||||| ||||| |||| | ||||||||||||||  || |||| ||| |||| |||||| || |  |||||||||    ||||||  | |||||||    
T  23453609 tacttgtaagttacaaattttctgtcctataaataggacatatattgccatataaataacacatttaagaagtaatatatacaatatacatttttgttct 23453708  T
Q  232 ctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    || ||||| ||||| | ||||||||||||  ||||||||||||||| |||||||||||| ||||||||||||    
T  23453709 ctttttatgcctttctatctactcttctatgttgtacaatatcttacaatactttggattaatttcataaca 23453780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 18557533 - 18557456
Alignment:
Q  225 ttgttctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  18557533 ttgttctctctttatcctttctctctactcttctacattgtacaatatcttacaatacttttgattaatttcataaca 18557456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 154 - 302
Target Start/End: Original strand, 25232095 - 25232244
Alignment:
Q  154 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctac 252  Q
    ||||| ||| ||||||||||  || ||||| |||||||||||||||||||  || |||| |||| |||||||||||||| |||||||| ||| |||||||    
T  25232095 tttgtgtcccataaataggacatatattgtaatgtaaagaacacacttgagaagcaatacaatacactctcttgttctccctttatccttttctctctac 25232194  T
Q  253 tcttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    |||||||  ||||||| ||||||  ||| ||||  ||||||||| |||||    
T  25232195 tcttctatgttgtacattatcttgcaatgcttttcatcaatttcttaaca 25232244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 117 - 303
Target Start/End: Original strand, 19084540 - 19084730
Alignment:
Q  117 agtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataat 216  Q
    ||||| || |||||||||||| ||||||  ||| || ||||| || |||||||||||  || |||  | ||||||||||||||||||  || |||| | |    
T  19084540 agtcttatggctcttcatgtacttgtaacttaccacatttgtgtcatataaataggacttatatttgcttgtaaagaacacacttgagaagcaatacact 19084639  T
Q  217 atactctctt-gttctctctt--tatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 303  Q
    |||||||||| ||||||||||  | |||| || || ||||| |||||  ||||||||||||||  |||||||| |||||||||||||||||    
T  19084640 atactctctttgttctctcttgttctcccattctccctacttttctatgttgtacaatatcttgcaatacttttgatcaatttcataacac 19084730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 44117428 - 44117300
Alignment:
Q  179 attgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactcttcta---cattgtacaatatct 274  Q
    ||||||||||||| |||||||||||| | ||||| |||||||| |||| ||||| |||||||| ||| ||||||||||||||     |||||||||||||    
T  44117428 attgtcatgtaaataacacacttgaaaaataataaaatatactatcttattctccctttatccatttctctctactcttctatgttgttgtacaatatct 44117329  T
Q  275 tataatactttggatcaatttcataacac 303  Q
    |  || |||||| || | |||||||||||    
T  44117328 tgcaacactttgaattactttcataacac 44117300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 16443293 - 16443196
Alignment:
Q  206 agtaatataatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    ||||||| |||||||||||||||||||  ||||||| ||| |||||||| |||||  ||||||||||||||  ||| |||||||| ||||| ||||||    
T  16443293 agtaatacaatatactctcttgttctccatttatccttttctctctacttttctatgttgtacaatatcttgcaatgctttggattaattttataaca 16443196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 26195476 - 26195575
Alignment:
Q  206 agtaatataatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacact 304  Q
    ||||||| ||||||||||||||||||| |||||||| ||| ||| |||| |||||  ||||||||||||||  |||  |||| || ||||||||||||||    
T  26195476 agtaatacaatatactctcttgttctccctttatccttttctctatacttttctatgttgtacaatatcttggaatgttttgtattaatttcataacact 26195575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 25225790 - 25225896
Alignment:
Q  154 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctac 252  Q
    ||||| ||||||||||||||  |  ||||| |||||||||||||| ||||  || |||| |||| ||||| |||||||| |||||||| ||| |||||||    
T  25225790 tttgtgtcctataaataggacatgtattgtaatgtaaagaacacagttgagaagcaatacaatacactcttttgttctccctttatccttttctctctac 25225889  T
Q  253 tcttcta 259  Q
    |||||||    
T  25225890 tcttcta 25225896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 17830749 - 17830674
Alignment:
Q  226 tgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataa 300  Q
    |||| ||||||||||| ||| ||||||||||||||  ||||||||||||||| |||||||| ||| ||||| ||||    
T  17830749 tgttatctctttatccgtttctctctactcttctatgttgtacaatatcttacaatactttagattaattttataa 17830674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 11312387 - 11312419
Alignment:
Q  350 aaaatgaaatagttagccatgtattatagattc 382  Q
    ||||||||||| |||||||||||||||||||||    
T  11312387 aaaatgaaataattagccatgtattatagattc 11312419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 28663841 - 28663553
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| | ||||| ||| |||||||||||||||||| |||||    
T  28663841 atgaataaatgaaaatatgatttggatgtccattgtccccagaccttctatattccttaactattgtgactaaatgactttatttattcctattgatatt 28663742  T
Q  116 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataa 215  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||| ||    
T  28663741 tagtctcatggctcttcatgtaattataagttacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgagaaacaatacaa 28663642  T
Q  216 tatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 303  Q
    |||| ||| |||||||| || ||||| ||| |||||| | |||||  ||||||||||||||  |||| ||| ||| |||||||||||||    
T  28663641 tatattcttttgttctccctctatccttttctctctaattttctatgttgtacaatatcttgcaatattttagattaatttcataacac 28663553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 19699347 - 19699594
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | |||  ||||||||||||||||| |||||    
T  19699347 atgaataaatgcaaatatgatgtggatgaccattgtccctagaccttatatatcccttaactactatgattaaatgcctttatttattcctattgatatt 19699446  T
Q  116 tagtctcatcg----ctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaat 211  Q
    ||||||||| |    |||||||||||| |||||| |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| | ||||||    
T  19699447 tagtctcatggctgactcttcatgtaactgtaagttacaacttttgtatcctataaatatgacatacattgtcatgtaaagaacacacttgtaaagtaat 19699546  T
Q  212 ataatatactctcttgttctctctttatcccttt-tctctactcttct 258  Q
     |||||||||||||| || || | ||||| |||| |||||||||||||    
T  19699547 gtaatatactctcttcttatcccattatctctttctctctactcttct 19699594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 17935464 - 17935752
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||| ||| || | |||   | |||| ||   || | | | |    
T  17935464 atgaataaatgaaaatatgatgcggatgtccattgtttctagaccttctatattccttaactcctaagagtgaatgcatatattgatagttaatgacact 17935563  T
Q  116 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataa 215  Q
    |||||| || |||||||||||| ||||||  ||  || | ||| | ||||||||||||  || ||    |||||||  ||||||||||  || |||| ||    
T  17935564 tagtcttatggctcttcatgtacttgtaacttatcacatgtgtgttctataaataggacttatatctcaatgtaaaagacacacttgagaagcaatacaa 17935663  T
Q  216 tatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 303  Q
     ||||||| ||||| ||||||||||||||| ||||||||||||||   |||||||||||||  ||| ||||  ||||||||||||||||    
T  17935664 catactcttttgttatctctttatccctttctctctactcttctatggtgtacaatatcttgcaatgcttttcatcaatttcataacac 17935752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 303
Target Start/End: Complemental strand, 29742198 - 29742059
Alignment:
Q  163 tataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttctctactcttctacat 262  Q
    ||||||||||| |||||||   |||||| || ||||||||   ||||||| |||||||||| |||||||| |||||||| || |||||| |||| || |     
T  29742198 tataaataggacctacattaaaatgtaatga-cacacttgtgaagtaatacaatatactcttttgttctccctttatcctttctctctattcttatatac 29742100  T
Q  263 tgtacaatatcttataatactttggatcaatttcataacac 303  Q
    | |||||||| ||  ||| | |||||| |||||||||||||    
T  29742099 tttacaatattttgcaatgcattggattaatttcataacac 29742059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 24228356 - 24228309
Alignment:
Q  155 ttgtatcctataaataggatctacattgtcatgtaaagaacacacttg 202  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||    
T  24228356 ttgtatcctataaataggatctatattgtaatgtaaagtacacacttg 24228309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 302
Target Start/End: Complemental strand, 29948450 - 29948340
Alignment:
Q  193 aacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatca 291  Q
    |||||||||||| || |||| |||||||||| |||||||| || ||||  ||| |||||||||||| |  ||| ||||||||||   ||||||| ||| |    
T  29948450 aacacacttgaaaagcaatacaatatactcttttgttctccctgtatcattttctctctactcttcgatgttgcacaatatcttgccatactttagatta 29948351  T
Q  292 atttcataaca 302  Q
    |||||||||||    
T  29948350 atttcataaca 29948340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 18080023 - 18079943
Alignment:
Q  160 tcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcc 241  Q
    |||||||||||||| |||||||   |||||| || ||||||||   ||||||| ||||||||||||||||||| ||||||||    
T  18080023 tcctataaataggacctacattacaatgtaatga-cacacttgtgaagtaatacaatatactctcttgttctccctttatcc 18079943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 17945752 - 17945788
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtc 52  Q
    ||||||||| |||||||||||||||||||||||||||    
T  17945752 atgaataaaggaaaatatgatgtggatgtccattgtc 17945788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 25590113 - 25590203
Alignment:
Q  214 aatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 303  Q
    |||||||||| || ||||| |||||||| ||| |||||||| || ||  |||||||||||| |  |||||||| ||| |||||||||||||    
T  25590113 aatatactcttttattctcactttatccttttctctctacttttatatgttgtacaatatcatgcaatactttagattaatttcataacac 25590203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 40786726 - 40786794
Alignment:
Q  169 taggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctcttt 237  Q
    ||||| ||| ||||| ||||||||||||||||||   ||||||| |||| |||||  ||||||||||||    
T  40786726 taggacctatattgtaatgtaaagaacacacttgtgaagtaatacaatacactcttatgttctctcttt 40786794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 26023376 - 26023553
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |||||    
T  26023376 atgaataaatgaaaatatgatgtggatgtccattgtctctagaccttctatattccttaactactatgactaaatgactttatttattcctattgatatt 26023475  T
Q  116 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaaga 193  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||    
T  26023476 tagtctcatggctcttcatataattgtaagttacaacttttgtatcctataaatagaacctacattgtcatgtaaaga 26023553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 26028693 - 26028809
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||| |||||    
T  26028693 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatattccttaactattatgactaaatgactttatttattcctattgatatt 26028792  T
Q  116 tagtctcatcgctcttc 132  Q
    ||||||||| |||||||    
T  26028793 tagtctcatggctcttc 26028809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 302
Target Start/End: Original strand, 27317702 - 27317850
Alignment:
Q  154 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatc-ccttttctctac 252  Q
    ||||| ||||||||||| || ||| ||||  ||||||||| |||||||||  ||||||| ||||||||||||||||||| |||||||   || |||||||    
T  27317702 tttgtgtcctataaatatgacctatattgaaatgtaaaga-cacacttgagaagtaatacaatatactctcttgttctccctttatcttgttctctctac 27317800  T
Q  253 tcttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    |||||||  ||||||||||||||  ||| |||| ||| ||||| ||||||    
T  27317801 tcttctatgttgtacaatatcttgaaatgcttttgattaattttataaca 27317850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 302
Target Start/End: Complemental strand, 18643260 - 18643142
Alignment:
Q  185 atgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttc--tctactcttctacattgtacaatatcttataatac 282  Q
    ||||||||||||||||||   ||||||| |||||||| | || |||||||||||| |||||||  |||| |||| || | | ||||||||||| |||||     
T  18643260 atgtaaagaacacacttgtgaagtaatacaatatactatgttattctctctttat-ccttttcaatctattcttatatactttacaatatcttgtaatat 18643162  T
Q  283 tttggatcaatttcataaca 302  Q
    |||| |||||||||||||||    
T  18643161 tttgaatcaatttcataaca 18643142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 18188202 - 18188138
Alignment:
Q  193 aacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactctt 256  Q
    |||||||||||  |||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  18188202 aacacacttgagaagtaatataacatactcttttgttatctctttatccctttctctctactctt 18188138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 18188364 - 18188307
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaact 77  Q
    |||||||||||||||||||||| |||    ||||||||||||||||||||||| ||||||||    
T  18188364 atgaataaatgaaaatatgatgggga----cattgtccctagaccttctatattccttaact 18188307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 145442 - 145352
Alignment:
Q  160 tcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttctcta 251  Q
    |||||||||||||| |||||||   |||||| || |||||||||  || |||| | |||||||||||||||||||||||||| || ||||||    
T  145442 tcctataaataggacctacattacaatgtaatga-cacacttgagaagcaatacactatactctcttgttctctctttatcctttctctcta 145352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 18640543 - 18640452
Alignment:
Q  185 atgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatctt 275  Q
    |||||||||||||||||    ||||||| |||||||| ||||||||||| |||||||||||  ||||| |||| || ||| |||||||||||    
T  18640543 atgtaaagaacacacttttgaagtaatacaatatactatcttgttctctgtttatccctttcactctattcttatatattttacaatatctt 18640452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 29547858 - 29547902
Alignment:
Q  160 tcctataaataggatctacattgtcatgtaaagaacacacttgaa 204  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||    
T  29547858 tcctataaataggacctatattgtaatgtaaagaacacacttgaa 29547902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 29530197 - 29530247
Alignment:
Q  154 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaa 204  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||||||||||    
T  29530197 tttgtgtcatataaataggacctatattgtaatgtaaagaacacacttgaa 29530247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 5032562 - 5032474
Alignment:
Q  214 aatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    |||||| |||||| ||||| |||||||  ||| |||||||| |||||  ||||||||||||||  |||||||| ||| ||||||||||||    
T  5032562 aatatattctcttcttctc-ctttatcattttctctctacttttctatgttgtacaatatcttgcaatactttagattaatttcataaca 5032474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 15552966 - 15553049
Alignment:
Q  156 tgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatc 240  Q
    |||||||||||||||||| ||| ||||  |||||| | |||||||||   ||||||| |||||||| |||| ||||| |||||||    
T  15552966 tgtatcctataaataggacctatattgcaatgtaatg-acacacttgtgaagtaatacaatatactatcttattctccctttatc 15553049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 16080 - 16263
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||||||||||||| ||| ||||||||||||| |||| |||||    
T  16080 atgaataaatgaaaatatgatgtggatgtacattgtctctataccttctatattctttaactactatgactaaatgactttatttattcatattgatatt 16179  T
Q  116 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacac 199  Q
    || |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  16180 tactctcatggctcttcatgtaattgtaagttacaacttttgtatcctataaataggacctacattgccatgtaaagaacacac 16263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 17190645 - 17190917
Alignment:
Q  29 aatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttagtctcatcgct 128  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||| |||| |||| ||||||| || |||  ||    
T  17190645 aatatgatgtggatgtccattttccctagactttctatatcccttaactactatgactaaatgactttattcattcttattgatatttaatcccatgact 17190744  T
Q  129 cttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgt 228  Q
    |||||| || ||||||| ||||||||||| |||||||||||||||||||||||| |||||||||  |||||||||  || |||| |||||||||| ||||    
T  17190745 cttcatatacttgtaagttacaacttttgcatcctataaataggatctacattgccatgtaaagggcacacttgagaagaaatacaatatactcttttgt 17190844  T
Q  229 tctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    |||  |||||| | ||||||||| | || ||  ||||||||||||||  ||| |||| ||| | ||||||||||    
T  17190845 tcttcctttat-cattttctctatttttttatgttgtacaatatcttgcaattctttagattattttcataaca 17190917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 23600169 - 23600001
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||    
T  23600169 atgaataaatgaaaatatgatgtagatgtccattgtccctaaaccttctatatcccttaactactatgactaaatgactttgtttattcctattgatatt 23600070  T
Q  116 tag---tctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacatt 181  Q
    |||   ||||||  ||||||||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  23600069 tagtactctcatgactcttcatgtaattgtaagttacaacttttatatcctataaataggacctacatt 23600001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 17275240 - 17275084
Alignment:
Q  83 gacttaataactttatttattcctattaatatttagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattg 182  Q
    |||| ||| |||||||| |||| |||| ||||||||||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  17275240 gactaaatgactttattaattcttattgatatttagtctcatgactcttcatgtaattgtaagttacaacttttgtatcatataaataggacctacattg 17275141  T
Q  183 tcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttat 239  Q
     ||||||||||||||||||||  || |||| ||||| ||||||||||||| ||||||    
T  17275140 ccatgtaaagaacacacttgagaagcaatacaatatgctctcttgttctccctttat 17275084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 17270330 - 17270156
Alignment:
Q  64 tatatcccttaactactatgacttaataactttatttattcctattaatatttagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcct 163  Q
    ||||||||||||  ||||||||  |||  ||||||| |||| |||| | ||||||||| ||  ||||||||||||||||||| |||||||||||||||||    
T  17270330 tatatcccttaagcactatgaccaaatggctttattaattcttattgaaatttagtcttatgactcttcatgtaattgtaagttacaacttttgtatcct 17270231  T
Q  164 ataa------ataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctc 232  Q
    ||||      |||||| |||||||| ||||||||||||||||||||  || |||| ||||||||||||| |||||    
T  17270230 ataaatagatataggacctacattgccatgtaaagaacacacttgagaagcaatacaatatactctctttttctc 17270156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 11302144 - 11302326
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttatt------cctatt 109  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||   ||||| || || |  ||||||| ||| ||||||||||||      | ||||    
T  11302144 atgaataaatgaaaatatgatgtggatgttcattgtct-tagacct---atatctctgaattgttatgactaaatgactttatttatttttattcttatt 11302239  T
Q  110 aatatttagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaaca 196  Q
     ||||||  | |||| |||||||||||||||||||  |||||||||||||||||||||||||||  ||||||  |||||||| ||||    
T  11302240 gatattttatttcatagctcttcatgtaattgtaaattacaacttttgtatcctataaataggacttacattaccatgtaaaaaaca 11302326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 302
Target Start/End: Original strand, 25398217 - 25398359
Alignment:
Q  160 tcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactcttct 258  Q
    |||||||||||||| |||||||   |||||| || ||||||||   ||||||| ||||||||||||||||||| |||||||| ||| |||||||| ||||    
T  25398217 tcctataaataggacctacattacaatgtaatga-cacacttgtgaagtaatacaatatactctcttgttctccctttatccttttctctctacttttct 25398315  T
Q  259 acattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    |   |||||||||||||  ||| |||||||| ||||||||||||    
T  25398316 atggtgtacaatatcttgcaatgctttggattaatttcataaca 25398359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 19441214 - 19441127
Alignment:
Q  154 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctc-ttgttctctctttatc 240  Q
    ||||| ||||||||||||||  || ||||| || ||| | |||||||||   ||||||||||||||||||| |||||||| |||||||    
T  19441214 tttgtgtcctataaataggacatatattgtaatataacggacacacttgtgaagtaatataatatactctctttgttctcactttatc 19441127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 10733940 - 10734106
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||          |||| |||||    
T  10733940 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatattctttaactactatgactaaatgactt----------tattgatatt 10734029  T
Q  116 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaaga 193  Q
    || ||||||  ||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||    
T  10734030 taatctcatgactcttcatgtaattgtaagttacaac-tttgtatcctataaataggacctacattgtcatgtaaaga 10734106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 10738972 - 10739142
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||          |||| |||||    
T  10738972 atgaataaatgaaaatattatgtggatgtccattgtccctagaccttctatattctttaactactatgactaaatgactt----------tattgatatt 10739061  T
Q  116 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatc---ctataaataggatctacattgtcatgtaaaga 193  Q
    |||||||||  |||||||||||| |||||| |||||||||||||||   |||||||||||| |||||||| ||||||||||    
T  10739062 tagtctcatgactcttcatgtaaatgtaagttacaacttttgtatcctactataaataggacctacattgccatgtaaaga 10739142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 302
Target Start/End: Original strand, 23429686 - 23429828
Alignment:
Q  160 tcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcc-cttttctctactcttct 258  Q
    |||||||||||||| |||||||   |||||| || ||||||||   ||||| | ||||||||||||||||||| |||||||| ||| |||||||| ||||    
T  23429686 tcctataaataggacctacattacaatgtaatga-cacacttgtgaagtaaaacaatatactctcttgttctccctttatcctcttctctctacttttct 23429784  T
Q  259 acattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    | |||||||||||||||   || |||||||| ||||||||||||    
T  23429785 atattgtacaatatcttgcgatgctttggattaatttcataaca 23429828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 17909750 - 17909809
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaa 75  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  17909750 atgaataaatgaaaatatgatgtggatgtccattgtccctagcccttctattttccttaa 17909809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 303
Target Start/End: Complemental strand, 29185611 - 29185461
Alignment:
Q  154 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctcttta-tcccttttctctac 252  Q
    ||||| ||||||||||||||  || ||||| ||||||| ||||||||||   ||||||  ||||||||||| |||||| |||||| ||| |||||||||     
T  29185611 tttgtgtcctataaataggacatatattgtaatgtaaaaaacacacttgtgaagtaatgcaatatactctcatgttctttctttattcctttttctctat 29185512  T
Q  253 tcttctacattgtacaatatcttataatactttggatcaatttcataacac 303  Q
    |||| || | | |||||||| ||  |||| ||||||| |||||||||||||    
T  29185511 tcttatatactttacaatatattgcaatattttggattaatttcataacac 29185461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 17703002 - 17703091
Alignment:
Q  111 atatttagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacact 200  Q
    |||||||||||||| |||||    ||| ||||||| || ||||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  17703002 atatttagtctcatggctctgagggtacttgtaagttaaaacttttgtatcctataaataggacatacattgtcatgtaaagcacacact 17703091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 22274878 - 22274975
Alignment:
Q  206 agtaatataatatactctcttgttctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 303  Q
    ||||||| ||||||||||| ||||||| |||||||| || |||||| |||| || | | |||||||||||  ||| |||||||| |||||||||||||    
T  22274878 agtaatacaatatactctcctgttctccctttatcctttctctctattcttatatactttacaatatcttgcaatgctttggattaatttcataacac 22274975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 28350583 - 28350493
Alignment:
Q  214 aatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 303  Q
    |||||||||| |||||||| |||||||  ||| |||||| | |||||  ||||||||||||||  |||||||||||| |||||||||||||    
T  28350583 aatatactctattgttctccctttatctttttctctctagttttctatgttgtacaatatcttgcaatactttggattaatttcataacac 28350493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 12642443 - 12642365
Alignment:
Q  225 ttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    |||||||||||||||||| || ||||||||||| ||  ||||||||||||||  ||| |||| ||| ||||||||||||    
T  12642443 ttgttctctctttatccccttctctctactcttttatgttgtacaatatcttgcaatgcttttgattaatttcataaca 12642365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 17702402 - 17702491
Alignment:
Q  29 aatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttag 118  Q
    |||||||| |||||||||||| ||||||||| |||||| || ||||| | |||||| | ||| | |||||| ||||  ||| ||||||||    
T  17702402 aatatgatctggatgtccattttccctagactttctatttctcttaaatcctatgagtaaatgattttattcattctcattgatatttag 17702491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 28874100 - 28874275
Alignment:
Q  16 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||| ||||||| ||| |||||||| ||          |||    
T  28874100 atgaataaatgaaaatatgatgtggatgtccattatccctagaccttctatatttcttaactattatgactaaatgactttattgat----------att 28874189  T
Q  116 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttg 202  Q
    ||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||    
T  28874190 tagtctcatggttcttcatgtaattgtaagttacaacttttgtatcctataaataggacctacactgtcatataaag-acacacttg 28874275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 20679319 - 20679210
Alignment:
Q  163 tataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttctctactcttctacat 262  Q
    |||||||||||  || ||||| |||||||||| ||||||||  |||||||||||||||||| ||||| ||| |||||   ||||||||||| |||||  |    
T  20679319 tataaataggacatatattgt-atgtaaagaagacacttgagaagtaatataatatactcttttgttatctttttat-ttttttctctactattctatgt 20679222  T
Q  263 tgtacaatatct 274  Q
    |||||| |||||    
T  20679221 tgtacagtatct 20679210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 8563713 - 8563635
Alignment:
Q  228 ttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacacta 305  Q
    |||||||||||| ||||| ||| || |||| || ||| |||||||||||  |||||||| |||||||||||||||||||    
T  8563713 ttctctctttattcctttctctgtattcttatatattttacaatatcttgcaatactttagatcaatttcataacacta 8563635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 302
Target Start/End: Complemental strand, 20355082 - 20354990
Alignment:
Q  209 aatataatatactctcttgttctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    |||| |||||||||| || |||||||||||| ||||||||||||| |||||  |  || |||||||| ||||||||| ||| ||||| ||||||    
T  20355082 aatacaatatactcttttattctctctttat-ccttttctctacttttctatgtcatataatatcttgtaatactttagattaattttataaca 20354990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 17349991 - 17350070
Alignment:
Q  226 tgttctctctttatcccttttctc--tactcttctacattgtacaatatcttataatactttggatcaatttcataacac 303  Q
    |||||| ||||||| |||||||||  ||||||| || | | |||||||||||  |||||||| |||||||||||||||||    
T  17349991 tgttctatctttattccttttctctctactcttatatactttacaatatcttgcaatacttttgatcaatttcataacac 17350070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 12753699 - 12753604
Alignment:
Q  208 taatataatatactctcttgttctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 303  Q
    ||||| |||||||||||| |||||| |||||||| || |||||| |||| || | | ||||||||||   ||| || ||||| |||||||||||||    
T  12753699 taatacaatatactctctggttctccctttatcctttctctctattcttatatactttacaatatctagcaatgctctggattaatttcataacac 12753604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 7117295 - 7117113
Alignment:
Q  29 aatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttagtctcatcgct 128  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||| | |||||||| |||  ||||||| |||| |||| ||||||||||||||   |    
T  7117295 aatatgatgtggatgtccattttccctagaccttttatatcccttaatttctatgactaaatgtctttattcattcttattgatatttagtctcatgatt 7117196  T
Q  129 cttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaata 212  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| | |||||| |  |||||||||| ||||||  |||||||    
T  7117195 cttcatgtacttgtaagttacaacttttgtatcctataaataggaccaacattg-ccggtaaagaacatacttgagaagtaata 7117113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 38419851 - 38419938
Alignment:
Q  106 tattaatatttagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaaga 193  Q
    |||| |||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||||||||  ||||||||||||||||||    
T  38419851 tattgatatttagtctcatggttcttcatgtaattgtaagttacaacttttgtatcgtataaataggagttacattgtcatgtaaaga 38419938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 162 - 303
Target Start/End: Complemental strand, 20463193 - 20463052
Alignment:
Q  162 ctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttctctactcttctaca 261  Q
    |||||||||| | ||| ||||| |||||||||||||||||||  || |||| |  ||||||| ||||| ||||||||||||||| |||||||||||||      
T  20463193 ctataaatagaacctatattgtaatgtaaagaacacacttgagaagcaatacatcatactcttttgttatctctttatccctttcctctactcttctatg 20463094  T
Q  262 ttgtacaatatcttataatactttggatcaatttcataacac 303  Q
    ||||||||||| ||  ||| ||||  |||||||| |||||||    
T  20463093 ttgtacaatattttgcaatgcttttcatcaattttataacac 20463052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 308
Target Start/End: Original strand, 10937381 - 10937535
Alignment:
Q  154 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctac 252  Q
    ||||| |||||||||||||||||| ||||  ||||||||| |||| ||||  || |||| || ||||||| ||||| ||| ||||||||||| |||| ||    
T  10937381 tttgtgtcctataaataggatctatattgcaatgtaaaga-cacatttgagaagcaatacaacatactcttttgttatctatttatccctttctctcaac 10937479  T
Q  253 tcttctacattgtacaatatcttataatactttggatcaatttcataacactaatt 308  Q
    |||| ||| ||||| ||||||||| |||| ||| ||| |||||||||||| |||||    
T  10937480 tcttttacgttgtaaaatatcttacaatattttagattaatttcataacaataatt 10937535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 3170165 - 3170086
Alignment:
Q  180 ttgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactcttcta 259  Q
    |||| ||||||| |||||||||  | ||||||  ||||||||||||| ||||| ||||||| |||| ||||||||||||||    
T  3170165 ttgtaatgtaaaaaacacactttga-agtaatgcaatatactctcttcttctccctttatctctttctctctactcttcta 3170086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 302
Target Start/End: Complemental strand, 35339041 - 35338893
Alignment:
Q  155 ttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctact 253  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||   |  |||| |||||||| |||| ||||||||||||||||||  ||||| |    
T  35339041 ttgtatcctataaataggatctacattgtcatgtaaagaatacacttgtgaaagaatacaatatactatcttattctctctttatccctttaactctatt 35338942  T
Q  254 cttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    ||| || | | |||||||||||  ||||||||  |||||||||||||||    
T  35338941 cttatatactttacaatatcttgcaatactttaaatcaatttcataaca 35338893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 302
Target Start/End: Original strand, 42939884 - 42940025
Alignment:
Q  160 tcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttctctactcttcta 259  Q
    ||||||||||| || |||||||   |||||| || ||||||||   ||||||| ||||||| ||||||||||| |||||||| || |||||| |||| ||    
T  42939884 tcctataaataagacctacattacaatgtaatga-cacacttgtgaagtaatacaatataccctcttgttctccctttatcctttctctctattcttata 42939982  T
Q  260 cattgtacaatatcttataatactttggatcaatttcataaca 302  Q
     | | |||||||||||  ||| |||||||| ||||||||||||    
T  42939983 tactttacaatatcttgcaatgctttggattaatttcataaca 42940025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 302
Target Start/End: Original strand, 20125314 - 20125460
Alignment:
Q  156 tgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactc 254  Q
    ||||||||||||||||||  || ||||  |||||| || ||||||||   ||||||| ||||||| |||||||||||  ||||||| ||| |||||| |     
T  20125314 tgtatcctataaataggacatatattgcaatgtaatga-cacacttgtgaagtaatacaatataccctcttgttctccatttatccttttctctctaatt 20125412  T
Q  255 ttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    || ||  ||||||||||||||  ||| |||||||| ||||| ||||||    
T  20125413 ttatatgttgtacaatatcttgcaatgctttggattaattttataaca 20125460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 7578727 - 7578783
Alignment:
Q  246 tctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 302  Q
    ||||||||||| ||  ||||||||||||||| |||||||| ||| ||||||||||||    
T  7578727 tctctactcttatatgttgtacaatatcttacaatactttagattaatttcataaca 7578783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 8048986 - 8048936
Alignment:
Q  209 aatataatatactctcttgttctctctttatccc-ttttctctactcttcta 259  Q
    ||||||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  8048986 aatataatatattctcttgttctc-ctttatccctttttctctactcttcta 8048936  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 42937629 - 42937698
Alignment:
Q  206 agtaatataatatactctcttgttctctctttatcccttttctctactcttctacattgtacaatatctt 275  Q
    ||||||| ||||||||||||||||||  |||||||| || |||||| |||| || | | |||||||||||    
T  42937629 agtaatacaatatactctcttgttcttcctttatcctttctctctattcttatatactttacaatatctt 42937698  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 29332703 - 29332751
Alignment:
Q  36 tgtggatgtccattgtccctagaccttctatatcccttaactactatga 84  Q
    |||||||||||||| | |||| || ||||||||||||||||| ||||||    
T  29332703 tgtggatgtccatttttcctaaactttctatatcccttaactcctatga 29332751  T

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Target: scaffold0081 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 7780 - 7872
Alignment:
Q  29 aatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttagtct 121  Q
    ||||| |||| |||||||||| ||||||||| ||||||||||||||||| |||||| | |||  |||||||||||| ||||||||||||||||    
T  7780 aatattatgtagatgtccattttccctagactttctatatcccttaactcctatgagtaaatggctttatttattcttattaatatttagtct 7872  T

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