View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8293_low_17 (Length: 239)
Name: NF8293_low_17
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8293_low_17 |
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| [»] scaffold0341 (2 HSPs) |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 11778 - 11999
Alignment:
| Q |
18 |
caatccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11778 |
caatccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacat |
11877 |
T |
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| Q |
118 |
tctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11878 |
tctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccttc |
11977 |
T |
|
| Q |
218 |
cttccaatttctccatgcctgc |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
11978 |
cttccaatttctccatgcctgc |
11999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 4122 - 4341
Alignment:
| Q |
18 |
caatccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4122 |
caatccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacat |
4221 |
T |
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| Q |
118 |
tctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttc |
217 |
Q |
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| T |
4222 |
tctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctc |
4321 |
T |
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| Q |
218 |
cttccaatttctccatgcct |
237 |
Q |
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|||||||||||||||||| |
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| T |
4322 |
tctccaatttctccatgcct |
4341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 6510098 - 6510319
Alignment:
| Q |
18 |
caatccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510098 |
caatccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacat |
6510197 |
T |
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| Q |
118 |
tctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttc |
217 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| | || ||||||||| |||||||||| || || |
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| T |
6510198 |
tctcttgaacacaaagtaatccaatatgaatacatctaaaaatttcatttcgtgaatcattgtttaaagtagaatctatgataattgttgcagtaccatc |
6510297 |
T |
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| Q |
218 |
cttccaatttctccatgcctgc |
239 |
Q |
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|||||||||||||||||||| |
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| T |
6510298 |
aatccaatttctccatgcctgc |
6510319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 6497114 - 6497333
Alignment:
| Q |
20 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
6497114 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactatttagcatcactactacagtagccatgcttggcctgctagctacattc |
6497213 |
T |
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| Q |
120 |
tcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttcct |
219 |
Q |
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|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| | | ||||||||| |||||||||| || |||| |
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| T |
6497214 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct |
6497313 |
T |
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| Q |
220 |
tccaatttctccatgcctgc |
239 |
Q |
| |
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||||||| |||||||||||| |
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| T |
6497314 |
tccaattcctccatgcctgc |
6497333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 6514468 - 6514681
Alignment:
| Q |
24 |
atatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctctt |
123 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
6514468 |
atatgaaatgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctctt |
6514567 |
T |
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| Q |
124 |
gaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttcca |
223 |
Q |
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||||||||||||||||||||||||||||||| | ||| |||||| |||| |||||||||||| | | ||||||||||||| ||||||||| |||||||| |
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| T |
6514568 |
gaacacaaagtaatccaatatggatacatctcattatctcatttagtgagtcattgtttaatgttggatctatgatatttgctgcagtcccctccttcca |
6514667 |
T |
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| Q |
224 |
atttctccatgcct |
237 |
Q |
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|||||||||||||| |
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| T |
6514668 |
atttctccatgcct |
6514681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 6502468 - 6502663
Alignment:
| Q |
42 |
aaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaa |
141 |
Q |
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||||||||||| ||||||||||| || ||||||||||||||||||| |||||||||| |||| || | ||| |||||||||||||||||||||||||| |
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| T |
6502468 |
aaaggcattggaagagtaacagagtcgctattaagcatcactacaatagaagccatggttggtctatttactatattctcttgaacacaaagtaatccaa |
6502567 |
T |
|
| Q |
142 |
tatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcct |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
6502568 |
tatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaatttctccatgcct |
6502663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 185
Target Start/End: Complemental strand, 6526011 - 6525879
Alignment:
| Q |
53 |
gagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatggatacat |
152 |
Q |
| |
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|||||| | ||||| |||||||||||| | ||||| ||||||||| |||||||||||||| |||| ||||||||||||||||| ||||| ||||| ||| |
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| T |
6526011 |
gagagtgagagaatgactattaagcattagtacaatagaagccatagttggcctgctagctgcattttcttgaacacaaagtaacccaatgtggatgcat |
6525912 |
T |
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| Q |
153 |
cttagtatttcatttcgtgaatcattgtttaat |
185 |
Q |
| |
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|| | |||||| || |||||||||||||||| |
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| T |
6525911 |
ctcattatttcgttcactgaatcattgtttaat |
6525879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 47771667 - 47771525
Alignment:
| Q |
43 |
aaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaat |
142 |
Q |
| |
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|||| |||| |||||| | ||||| |||||||||||| | | |||||| ||||||| |||| ||| | ||||||| ||||||||||||||||| ||||| |
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| T |
47771667 |
aaggtattgagagagtgagagaataactattaagcatgagtgcaacagtagccatggttggtctgtcaactacattttcttgaacacaaagtaagccaat |
47771568 |
T |
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| Q |
143 |
atggatacatcttagtatttcatttcgtgaatcattgtttaat |
185 |
Q |
| |
|
|||||| ||||| | |||||||||| |||| |||||||||| |
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| T |
47771567 |
atggatgcatctcattatttcatttgctgaaatattgtttaat |
47771525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 47775819 - 47775677
Alignment:
| Q |
43 |
aaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaat |
142 |
Q |
| |
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|||| |||| |||||| | ||||| |||||||||||| | | |||||| ||||||| |||| ||| | ||||||| ||||||||||||||||| |||| |
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| T |
47775819 |
aaggtattgagagagtgagagaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaat |
47775720 |
T |
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| Q |
143 |
atggatacatcttagtatttcatttcgtgaatcattgtttaat |
185 |
Q |
| |
|
|||||||||||| | |||||||||| |||| |||||||||| |
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| T |
47775719 |
atggatacatctcattatttcatttgctgaaatattgtttaat |
47775677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 27367905 - 27367975
Alignment:
| Q |
33 |
gcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttgg |
103 |
Q |
| |
|
||||||| | |||| |||| ||||| || ||||| |||||||||||| ||| |||||||||||||| |||| |
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| T |
27367905 |
gcaggtttcgaaggtattgagagagcaagagaataactattaagcatgactgcaacagaagccatggttgg |
27367975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 28843804 - 28843869
Alignment:
| Q |
108 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaa |
173 |
Q |
| |
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||||||||||| ||||| ||||||||||| |||||||| || ||||| | |||||||||| |||| |
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| T |
28843804 |
ctagctacattgtcttgcacacaaagtaacccaatatgaatgcatctcatgatttcatttcttgaa |
28843869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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