View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8293_low_5 (Length: 517)

Name: NF8293_low_5
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8293_low_5
NF8293_low_5
[»] chr3 (12 HSPs)
chr3 (19-506)||(26832130-26832610)
chr3 (179-320)||(19624969-19625111)
chr3 (379-444)||(24871937-24872002)
chr3 (139-262)||(3362999-3363123)
chr3 (382-434)||(46627847-46627899)
chr3 (382-437)||(1923221-1923275)
chr3 (382-437)||(30261420-30261475)
chr3 (382-437)||(46194123-46194178)
chr3 (179-320)||(19646114-19646256)
chr3 (453-498)||(11251122-11251167)
chr3 (72-120)||(42250955-42251003)
chr3 (454-498)||(43639512-43639556)
[»] chr1 (14 HSPs)
chr1 (381-498)||(17724631-17724755)
chr1 (379-444)||(3718765-3718830)
chr1 (140-307)||(43542193-43542362)
chr1 (382-437)||(4466072-4466127)
chr1 (382-444)||(34814045-34814107)
chr1 (454-498)||(5040572-5040616)
chr1 (381-437)||(11425786-11425842)
chr1 (382-437)||(3160604-3160659)
chr1 (378-437)||(26760412-26760471)
chr1 (382-437)||(29756059-29756114)
chr1 (452-498)||(8773309-8773355)
chr1 (381-437)||(24131317-24131374)
chr1 (454-495)||(52432382-52432423)
chr1 (454-486)||(32348297-32348329)
[»] chr4 (10 HSPs)
chr4 (140-320)||(7103779-7103961)
chr4 (179-321)||(40756528-40756671)
chr4 (48-117)||(2577286-2577355)
chr4 (382-444)||(22872303-22872365)
chr4 (379-437)||(28330930-28330988)
chr4 (454-495)||(41203807-41203848)
chr4 (454-498)||(4360404-4360448)
chr4 (458-498)||(18849759-18849799)
chr4 (382-434)||(32949764-32949816)
chr4 (454-486)||(49306666-49306698)
[»] chr8 (10 HSPs)
chr8 (144-315)||(9492668-9492841)
chr8 (381-444)||(27973602-27973665)
chr8 (381-444)||(28030871-28030934)
chr8 (179-320)||(8970066-8970208)
chr8 (140-312)||(16435804-16435978)
chr8 (381-437)||(14690096-14690152)
chr8 (456-498)||(45425552-45425594)
chr8 (454-487)||(28802845-28802878)
chr8 (454-498)||(9014770-9014814)
chr8 (381-437)||(14748619-14748675)
[»] chr5 (14 HSPs)
chr5 (381-437)||(38979040-38979096)
chr5 (140-261)||(16055079-16055201)
chr5 (379-437)||(39060337-39060395)
chr5 (382-437)||(5147413-5147468)
chr5 (382-437)||(5357735-5357790)
chr5 (382-437)||(39060868-39060923)
chr5 (49-95)||(43292627-43292673)
chr5 (220-315)||(4719176-4719273)
chr5 (454-498)||(3725253-3725297)
chr5 (454-498)||(8692815-8692859)
chr5 (454-498)||(22582869-22582913)
chr5 (381-437)||(22983079-22983135)
chr5 (454-486)||(39008211-39008243)
chr5 (170-261)||(43462643-43462734)
[»] chr7 (8 HSPs)
chr7 (382-437)||(37264447-37264502)
chr7 (140-261)||(25616459-25616581)
chr7 (389-437)||(10355648-10355696)
chr7 (454-498)||(11616629-11616673)
chr7 (380-437)||(29996943-29997000)
chr7 (266-321)||(9112056-9112112)
chr7 (381-437)||(32776119-32776175)
chr7 (455-487)||(34001856-34001888)
[»] chr6 (5 HSPs)
chr6 (382-437)||(33921386-33921441)
chr6 (379-444)||(34703731-34703795)
chr6 (382-437)||(34803621-34803676)
chr6 (454-498)||(3604596-3604640)
chr6 (454-498)||(31265846-31265890)
[»] chr2 (10 HSPs)
chr2 (379-444)||(27001689-27001753)
chr2 (381-485)||(28527044-28527155)
chr2 (382-434)||(37528988-37529040)
chr2 (392-442)||(6213777-6213827)
chr2 (140-261)||(23496956-23497078)
chr2 (140-320)||(26024639-26024821)
chr2 (381-486)||(28301513-28301625)
chr2 (454-498)||(2882052-2882096)
chr2 (454-498)||(28925844-28925888)
chr2 (380-444)||(45464130-45464194)
[»] scaffold0321 (1 HSPs)
scaffold0321 (454-498)||(9548-9592)


Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 26832610 - 26832130
Alignment:
Q  19 ggttggccccaagtttgacatatatagagtttaaaccatgaaaacatacattgaaattaatacaatcatcaataatatatctgacgtaagtgagagattg 118  Q
    |||||||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26832610 ggttggcctcatgtctgacgtatatagagtttaaaccatgaaaacatacattgaaattaatacaatcatcaataatatatctgacgtaagtgagagattg 26832511  T
Q  119 ttaaagagcattcgtctccagaaccacattagaagcatccgattcctttaaaagattcataaagacacgtcttttgaaaatttcaaactcttacgcataa 218  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26832510 ttaaagagcattcgtctccagaaccacattagaagcatctgattcctttaaaagattcataaagacacgtcttttgaaaatttcaaactcttacgcatat 26832411  T
Q  219 ataaagcttatgctacctctgaatttgataatgaaaaaacttgatggcaactagcaccaacgcaacattttcactatctctcacaacaacaccaatatcc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||| |||||||||||||||||||||||||||||||    
T  26832410 ataaagcttatgctacctctgaatttgataatgaaaaaacttgatggca------accaacgcaacatcttcactatctctcacaacaacaccaatatcc 26832317  T
Q  319 catgatgcatcaacattaagcttatacc-aacccttgaaaaggggatgtcaagtaaacatcatatactccctccgtcccaatttaacttagccttttgct 417  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  26832316 catgatgcatcaacattaagcttataccaaacccttgaaaaggggatgtcaagtaaacatcatatactccctccgtcctgatttaactgagccttttgct 26832217  T
Q  418 caattcacacttattaagaacaatgtaataaagggaaaaaatggttttacgtgctcttgttaagtattgacgcattctccaacaccata 506  Q
    ||||||||||||||||||||||||||||  ||||  |||||| ||||||||||||||| ||||||||||| |||||||||| |||||||    
T  26832216 caattcacacttattaagaacaatgtaaagaagg--aaaaatagttttacgtgctcttattaagtattgatgcattctccaccaccata 26832130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 19624969 - 19625111
Alignment:
Q  179 aaagacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctctgaatttgataatgaaaaaacttgatggcaactagcaccaa 278  Q
    ||||||| ||||||  ||||||| ||||||||  |||||  |||| ||| ||| |||||||||| |||||||||||||  ||| ||| |||||| | |||    
T  19624969 aaagacatgtctttcaaaaatttgaaactcttctgcatagctaaatcttctgcaacctctgaatctgataatgaaaaattttgttggtaactagtagcaa 19625068  T
Q  279 cg-caacattttcactatctctcacaacaacaccaatatccca 320  Q
     | |||||  |||| |||||||||| | |||||||||||||||    
T  19625069 tgacaacaccttcattatctctcaccaaaacaccaatatccca 19625111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 24872002 - 24871937
Alignment:
Q  379 atatactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgta 444  Q
    ||||||||| | ||||||||||||| ||||| ||||||||| ||| ||||||||||||| ||||||    
T  24872002 atatactcctttcgtcccaatttaaattagcattttgctcatttcgcacttattaagaaaaatgta 24871937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 262
Target Start/End: Original strand, 3362999 - 3363123
Alignment:
Q  139 gaaccacattagaagcatccgattcctttaaaagattcataaaga-cacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctc 237  Q
    ||||||||||| ||||||| ||||||  || |||||| | ||| | || |||||||| ||||| ||| | ||| ||||||  |||||||| | |||||||    
T  3362999 gaaccacattaaaagcatctgattccgctataagatttagaaaaaacatgtcttttgcaaattccaaccccttccgcatagctaaagctttttctacctc 3363098  T
Q  238 tgaatttgataatgaaaaaacttga 262  Q
    ||||| || ||||||||| ||||||    
T  3363099 tgaatctggtaatgaaaagacttga 3363123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 46627847 - 46627899
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaa 434  Q
    ||||| |||||||||||||||| | ||||||||| ||| ||||||||||||||    
T  46627847 tactctctccgtcccaatttaagtgagccttttgttcatttcacacttattaa 46627899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 1923275 - 1923221
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||| ||||||| |||| || ||||| |||||||||||||||||    
T  1923275 tactccctccgtcccattttaactgagccctt-gctcatttcacacttattaagaa 1923221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 30261420 - 30261475
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||| ||||||| ||||||||| ||| ||||| | |||||||||    
T  30261420 tactccctccgtcccattttaactgagccttttgttcatttcacgcatattaagaa 30261475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 46194123 - 46194178
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||||||||||| |||| ||  || | |||||||||||||||||    
T  46194123 tactccctccgtcccaatttaactgagcccttgactaatttcacacttattaagaa 46194178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 19646114 - 19646256
Alignment:
Q  179 aaagacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctctgaatttgataatgaaaaaacttgatggcaactagcaccaa 278  Q
    ||||||| ||||||  |||||| |||| |||| || |||  |||| ||| ||| |||||||||| || |||  ||||||||||   | |||||||| |||    
T  19646114 aaagacatgtctttcaaaaattccaaattcttccgtatagctaaatcttctgcaacctctgaatctggtaagaaaaaaacttgtcagtaactagcagcaa 19646213  T
Q  279 cg-caacattttcactatctctcacaacaacaccaatatccca 320  Q
     | |||||  |||| |||||||||| |||||||||||||||||    
T  19646214 tgacaacaccttcattatctctcaccacaacaccaatatccca 19646256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 11251122 - 11251167
Alignment:
Q  453 aaaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    |||||||| ||||| |||||||||||||||||||  ||||||||||    
T  11251122 aaaaaatgattttaagtgctcttgttaagtattggtgcattctcca 11251167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 42251003 - 42250955
Alignment:
Q  72 aaattaatacaatcatcaataatatatctgacgtaagtgagagattgtt 120  Q
    |||||||||||||||||||||||| | | ||| || |||||||||||||    
T  42251003 aaattaatacaatcatcaataatagagcagacataggtgagagattgtt 42250955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 43639512 - 43639556
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||||||||| ||||| |||||||||||||| ||||| ||||    
T  43639512 aaaaatggttttaagtgctgttgttaagtattgatgcattttcca 43639556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 498
Target Start/End: Original strand, 17724631 - 17724755
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgtaataa--aggga-----aaaaatggttttacgtgctc 473  Q
    ||||| |||||||||| |||||||| || |||||||||||||||||||| ||||||| ||||||||||  | |||     |||||| |||||| ||||||    
T  17724631 atactacctccgtcccgatttaactgagacttttgctcaattcacacttgttaagaaaaatgtaataatgaaggagagagaaaaattgttttaagtgctc 17724730  T
Q  474 ttgttaagtattgacgcattctcca 498  Q
    ||||||| |||||| ||||||||||    
T  17724731 ttgttaattattgatgcattctcca 17724755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 3718765 - 3718830
Alignment:
Q  379 atatactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgta 444  Q
    |||||||||||| |||||||||||| | | | ||||||||| ||||||||||||||||| ||||||    
T  3718765 atatactccctctgtcccaatttaagtgaacattttgctcatttcacacttattaagaaaaatgta 3718830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 307
Target Start/End: Complemental strand, 43542362 - 43542193
Alignment:
Q  140 aaccacattagaagcatccgattcctttaaaagattca-taaagacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctct 238  Q
    |||||||||||||||||| |||||   || ||||||||  ||||||| |||||| | ||| | ||||| ||| ||||||  |||||||| ||| ||||||    
T  43542362 aaccacattagaagcatctgattctgctataagattcagaaaagacatgtctttcgcaaactccaaacccttccgcatagctaaagcttctgcaacctct 43542263  T
Q  239 gaatttgataatgaaaaaacttgatggcaactagcaccaacg-caacattttcactatctctcacaacaa 307  Q
    |||| || ||||||||| | |||     |||||||||||||| |||||  |||| |||||||||||||||    
T  43542262 gaatctggtaatgaaaagatttgccaaaaactagcaccaacgacaacaccttcattatctctcacaacaa 43542193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 4466072 - 4466127
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||||||||| | |||| |||| ||| |||||||||||||||||    
T  4466072 tactccctccgtcccaatttaattgagccatttgttcatttcacacttattaagaa 4466127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 34814107 - 34814045
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgta 444  Q
    |||||||||||||||||||||| | |   ||||||||| ||||||||||||||||| ||||||    
T  34814107 tactccctccgtcccaatttaagtgaattttttgctcatttcacacttattaagaaaaatgta 34814045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 5040572 - 5040616
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||||||||| ||| |||||||||||||||| ||||||||||    
T  5040572 aaaaatggttttaggtgatcttgttaagtattgatgcattctcca 5040616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 11425786 - 11425842
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    ||||||||||||||||||||||| | |||| |||||||| |||||  ||||||||||    
T  11425786 atactccctccgtcccaatttaattgagccatttgctcatttcacgtttattaagaa 11425842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 3160604 - 3160659
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||| ||||||| |||| ||  |||| |||||||||||||||||    
T  3160604 tactccctccgtcccattttaactgagcccttgactcatttcacacttattaagaa 3160659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 26760471 - 26760412
Alignment:
Q  378 catatactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    ||||||||| |||||||||| ||||||  |||||||  |||| |||||||||||||||||    
T  26760471 catatactctctccgtcccattttaaccgagcctttgactcatttcacacttattaagaa 26760412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 29756059 - 29756114
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||| ||||||  |||| || ||||| |||||||||||||||||    
T  29756059 tactccctccgtcccattttaacggagcccttggctcatttcacacttattaagaa 29756114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 8773355 - 8773309
Alignment:
Q  452 gaaaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    |||||||| |||||| |||||||||||||||||||  ||||||||||    
T  8773355 gaaaaaatagttttaagtgctcttgttaagtattggtgcattctcca 8773309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 24131317 - 24131374
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttg-ctcaattcacacttattaagaa 437  Q
    ||||||||||||||||| ||||||| || | |||| |||| |||||||||||||||||    
T  24131317 atactccctccgtcccattttaactgagtcatttgactcatttcacacttattaagaa 24131374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 52432423 - 52432382
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattct 495  Q
    ||||||| ||||| |||||||||||||||||||| |||||||    
T  52432423 aaaaatgattttaagtgctcttgttaagtattgatgcattct 52432382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 32348329 - 32348297
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattg 486  Q
    ||||||||||||| |||||||||||||||||||    
T  32348329 aaaaatggttttaagtgctcttgttaagtattg 32348297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 320
Target Start/End: Complemental strand, 7103961 - 7103779
Alignment:
Q  140 aaccacattagaagcatccgattcctttaaaagattcataaa-gacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctct 238  Q
    |||||||||||||||||| |||||   || |||||||| ||| |||| ||| |||| ||||| ||||| ||| ||||||  ||| | || ||| ||||||    
T  7103961 aaccacattagaagcatctgattctgctataagattcagaaaagacatgtcatttgcaaattccaaacccttccgcatagctaaggattctgcaacctct 7103862  T
Q  239 gaatttgataatgaaaaaacttgatggcaactagcaccaacg-caacattttcactatctctcacaacaacaccaatatccca 320  Q
    ||||||| ||||||||| |||||     |||||||| ||||| |||||  |||| |||||||||| |||||||||||| ||||    
T  7103861 gaatttggtaatgaaaagacttgccaataactagcatcaacgacaacaccttcattatctctcaccacaacaccaatacccca 7103779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 321
Target Start/End: Original strand, 40756528 - 40756671
Alignment:
Q  179 aaagacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctctgaatttgataatgaaaaaacttgatggcaactagcaccaa 278  Q
    ||||||| |||||||| ||||| ||| | |||   ||||  ||||||||  || |||||||||| || ||||||||| |||||   | ||||||||||||    
T  40756528 aaagacatgtcttttgcaaattacaatcccttctacatagctaaagcttccgcaacctctgaatctggtaatgaaaatacttgtcaggaactagcaccaa 40756627  T
Q  279 cg-caacattttcactatctctcacaacaacaccaatatcccat 321  Q
    || |||||  |||| |||||||||| ||||||||||||||||||    
T  40756628 cgacaacaccttcattatctctcaccacaacaccaatatcccat 40756671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 2577286 - 2577355
Alignment:
Q  48 tttaaaccatgaaaacatacattgaaattaatacaatcatcaataatatatctgacgtaagtgagagatt 117  Q
    ||||||| | ||||||||||||| ||||||||| |||||||||||||| ||||||| || || |||||||    
T  2577286 tttaaactacgaaaacatacattaaaattaatataatcatcaataataaatctgacataggtcagagatt 2577355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 22872303 - 22872365
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgta 444  Q
    ||||||||||||||||| |||| | |||| |||||||| ||||||| ||||||||| ||||||    
T  22872303 tactccctccgtcccaaattaagtgagccatttgctcatttcacacatattaagaaaaatgta 22872365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 28330988 - 28330930
Alignment:
Q  379 atatactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    ||||||||||||||||||| ||||||| |||| ||  |||| |||||||||||||||||    
T  28330988 atatactccctccgtcccattttaactgagccattgactcatttcacacttattaagaa 28330930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 41203848 - 41203807
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattct 495  Q
    ||||||||||||  |||||||||||||||||||| |||||||    
T  41203848 aaaaatggtttttagtgctcttgttaagtattgatgcattct 41203807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 4360404 - 4360448
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||||||||| ||||| |||||||||||||  ||||||||||    
T  4360404 aaaaatggttttaagtgcttttgttaagtattggtgcattctcca 4360448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 18849759 - 18849799
Alignment:
Q  458 atggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||||| |||||||||||||||||||  ||||||||||    
T  18849759 atggttttaagtgctcttgttaagtattggtgcattctcca 18849799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 32949764 - 32949816
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaa 434  Q
    ||||||||| |||||| ||||||| |||||||  |||| ||||||||||||||    
T  32949764 tactccctctgtcccattttaactgagcctttgactcatttcacacttattaa 32949816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 49306698 - 49306666
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattg 486  Q
    ||||||||||||| |||||||||||||||||||    
T  49306698 aaaaatggttttaagtgctcttgttaagtattg 49306666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 315
Target Start/End: Original strand, 9492668 - 9492841
Alignment:
Q  144 acattagaagcatccgattcctttaaaagattcataaag-acacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctctgaat 242  Q
    |||||||||||||| |||||   || |||||||| |||  |||||||||||  ||||||||||| ||| ||||||  |||||||| | | ||| ||||||    
T  9492668 acattagaagcatctgattctgctataagattcagaaaacacacgtcttttacaaatttcaaaccctttcgcatagctaaagcttctacaacccctgaat 9492767  T
Q  243 ttgataatgaaaaaacttgatggcaactagcaccaacg-caacattttcactatctctcacaacaacaccaata 315  Q
     || ||||||||| |||||   | |||||||| ||| | ||||| ||||| |||||||||| ||||||||||||    
T  9492768 ctggtaatgaaaagacttgtcaggaactagcatcaaggacaacactttcattatctctcaccacaacaccaata 9492841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 27973602 - 27973665
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgta 444  Q
    |||||| |||||||||||||||| | ||| ||||||||| ||||||||||||||||| ||||||    
T  27973602 atactctctccgtcccaatttaagtgagcattttgctcatttcacacttattaagaaaaatgta 27973665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 28030871 - 28030934
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgta 444  Q
    |||||| |||||||||||||||| | ||| ||||||||| ||||||||||||||||| ||||||    
T  28030871 atactctctccgtcccaatttaagtgagcattttgctcatttcacacttattaagaaaaatgta 28030934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 179 - 320
Target Start/End: Complemental strand, 8970208 - 8970066
Alignment:
Q  179 aaagacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctctgaatttgataatgaaaaaacttgatggcaactagcaccaa 278  Q
    ||||||| |||||||| ||||| ||||||||| || |||  |||||||| ||| |||| | |||  | ||||||||| ||||| | | ||||| ||||||    
T  8970208 aaagacatgtcttttgcaaattccaaactcttccgtatagctaaagcttctgcaacctttaaatccggtaatgaaaagacttgctagaaactaacaccaa 8970109  T
Q  279 cg-caacattttcactatctctcacaacaacaccaatatccca 320  Q
    || |||||  |||| |||||||||| |||||||||||| ||||    
T  8970108 cgacaacaccttcattatctctcaccacaacaccaatacccca 8970066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 140 - 312
Target Start/End: Original strand, 16435804 - 16435978
Alignment:
Q  140 aaccacattagaagcatccgattcctttaaaagattcataaa-gacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctct 238  Q
    ||||||||||||| |||| |||||   || |||||||| ||| |||| |||||||| ||||||||||| ||| | ||||  |||| ||| ||| ||||||    
T  16435804 aaccacattagaaacatctgattctgctataagattcagaaaagacatgtcttttgcaaatttcaaaccctttcccatagctaaaacttctgcaacctct 16435903  T
Q  239 gaatttgataatgaaaaaacttgatggcaactagcaccaacg-caacattttcactatctctcacaacaacacca 312  Q
     |||||| |||||||||  | ||   | |||||||||||||| |||||  |||| |||||||||| |||||||||    
T  16435904 taatttggtaatgaaaagccatgtcaggaactagcaccaacgacaacaccttcattatctctcaccacaacacca 16435978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 14690152 - 14690096
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    ||||||||||||||||| ||||||| |||| ||  |||| |||||||||||||||||    
T  14690152 atactccctccgtcccattttaactgagcccttgactcatttcacacttattaagaa 14690096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 498
Target Start/End: Complemental strand, 45425594 - 45425552
Alignment:
Q  456 aaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||    
T  45425594 aaatggttttaagtgctcttgttaagtattgatgcattttcca 45425552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 487
Target Start/End: Complemental strand, 28802878 - 28802845
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattga 487  Q
    ||||||||||||| ||||||||||||||||||||    
T  28802878 aaaaatggttttaagtgctcttgttaagtattga 28802845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 9014814 - 9014770
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||| ||||| ||||| |||||||||||||| ||||||||||    
T  9014814 aaaaatgattttaagtgcttttgttaagtattgatgcattctcca 9014770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 14748619 - 14748675
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    ||||||||||||||||| ||||||| |||| ||  |||| || ||||||||||||||    
T  14748619 atactccctccgtcccattttaactgagcccttgactcattttacacttattaagaa 14748675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 38979096 - 38979040
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    ||||||||||||||||| ||||||| |||| ||| |||| |||||||||||||||||    
T  38979096 atactccctccgtcccattttaactgagccatttactcatttcacacttattaagaa 38979040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 16055201 - 16055079
Alignment:
Q  140 aaccacattagaagcatccgattcctttaaaagattcataaa-gacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctct 238  Q
    |||||||||||||||||| |||||   || |||||||| ||| | || || | | | ||| ||||||||||| ||||||  |||||||| ||| ||||||    
T  16055201 aaccacattagaagcatctgattctgctataagattcaaaaaagtcatgtttatcgcaaacttcaaactctttcgcatagttaaagcttctgcaacctct 16055102  T
Q  239 gaatttgataatgaaaaaacttg 261  Q
    |||| |||||||||||| |||||    
T  16055101 gaatctgataatgaaaagacttg 16055079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Original strand, 39060337 - 39060395
Alignment:
Q  379 atatactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    ||||||||||||||| ||||||||| | | || |||||||| |||||||||||||||||    
T  39060337 atatactccctccgttccaatttaattgaaccatttgctcatttcacacttattaagaa 39060395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 5147413 - 5147468
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||| ||||||| || ||||  |||| |||||||||||||||||    
T  5147413 tactccctccgtcccattttaactgagtctttgactcatttcacacttattaagaa 5147468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 5357735 - 5357790
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||||||||| | | || |||||||| | |||||||||||||||    
T  5357735 tactccctccgtcccaatttaattgaaccatttgctcattacacacttattaagaa 5357790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 39060868 - 39060923
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||| ||||| |||| ||||  |||| |||||||||||||||||    
T  39060868 tactccctccgtcccattttaatttagactttgactcatttcacacttattaagaa 39060923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 43292673 - 43292627
Alignment:
Q  49 ttaaaccatgaaaacatacattgaaattaatacaatcatcaataata 95  Q
    ||||||| |||||| | ||||| ||||||||||||||||||||||||    
T  43292673 ttaaaccgtgaaaaaacacattaaaattaatacaatcatcaataata 43292627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 4719176 - 4719273
Alignment:
Q  220 taaagcttatgctacctctgaatttgataatgaaaaaa-cttgatggcaactagcaccaacg-caacattttcactatctctcacaacaacaccaata 315  Q
    |||||||| ||||| |||| ||| ||||||| |||||| ||||  |||||||||||| || | |||||| |||| |||||||| | ||||||||||||    
T  4719176 taaagcttctgctatctctaaatctgataataaaaaaaacttgccggcaactagcacaaatgacaacatcttcattatctctcgccacaacaccaata 4719273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 3725297 - 3725253
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||||||||| ||||| |||||||||||||  ||||||||||    
T  3725297 aaaaatggttttaagtgctattgttaagtattggtgcattctcca 3725253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 8692815 - 8692859
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||||||||| ||| |||||||||||||||  ||||||||||    
T  8692815 aaaaatggttttaagtgttcttgttaagtattggtgcattctcca 8692859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 22582869 - 22582913
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||| ||||| |||||||||||||||| ||| ||||||||||    
T  22582869 aaaaatgattttaagtgctcttgttaagtaatgatgcattctcca 22582913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 22983135 - 22983079
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    ||||||||||||||||| ||||||| | | ||||| ||| ||||||| |||||||||    
T  22983135 atactccctccgtcccattttaactaaacattttgttcatttcacacatattaagaa 22983079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 39008243 - 39008211
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattg 486  Q
    ||||||||||||| |||||||||||||||||||    
T  39008243 aaaaatggttttaagtgctcttgttaagtattg 39008211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 43462734 - 43462643
Alignment:
Q  170 aagattcataaa-gacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctctgaatttgataatgaaaaaacttg 261  Q
    |||||||||||| |||| |||| ||  ||||| |||||| || ||||||  ||||||| |||| |||||||||| |||||||||||| |||||    
T  43462734 aagattcataaaagacatgtctcttacaaattccaaactttttcgcatagctaaagct-atgcaacctctgaatctgataatgaaaagacttg 43462643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 37264502 - 37264447
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||| ||||| | ||||||||||||| ||||||| |||||||||    
T  37264502 tactccctccgtcccattttaagtgagccttttgctcatttcacacatattaagaa 37264447  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 25616459 - 25616581
Alignment:
Q  140 aaccacattagaagcatccgattcctttaaaagattc-ataaagacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctct 238  Q
    |||||||||||||||| | |||||   || ||||||| | ||||||| |||||||| ||||| ||||| ||| ||||||  |||||| | ||| ||||||    
T  25616459 aaccacattagaagcaactgattctgctataagattcaaaaaagacatgtcttttgcaaattccaaacccttccgcatagctaaagcctctgcaacctct 25616558  T
Q  239 gaatttgataatgaaaaaacttg 261  Q
    |||| || ||||||||| |||||    
T  25616559 gaatctggtaatgaaaagacttg 25616581  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 10355648 - 10355696
Alignment:
Q  389 tccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    ||||||||| ||||||||||| ||||||||| ||||||||| |||||||    
T  10355648 tccgtcccattttaacttagcattttgctcatttcacacttgttaagaa 10355696  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 11616673 - 11616629
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||||||||| |||||||||||||||||||  ||||||||||    
T  11616673 aaaaatggttttaagtgctcttgttaagtattggtgcattctcca 11616629  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 29996943 - 29997000
Alignment:
Q  380 tatactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||| ||||||||| | ||||||| |||||||  |||| |||||||||||||||||    
T  29996943 tatacttcctccgtcctattttaactgagcctttgactcatttcacacttattaagaa 29997000  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 9112056 - 9112112
Alignment:
Q  266 caactagcaccaacg-caacattttcactatctctcacaacaacaccaatatcccat 321  Q
    ||||||||| ||||| |||||  |||| ||||||||||||||||||||||| |||||    
T  9112056 caactagcagcaacgacaacaccttcattatctctcacaacaacaccaataccccat 9112112  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 32776175 - 32776119
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    ||||||||||||| ||| | ||| | ||||||||||||| ||||||| |||||||||    
T  32776175 atactccctccgttccattataaatgagccttttgctcatttcacacatattaagaa 32776119  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 34001856 - 34001888
Alignment:
Q  455 aaaatggttttacgtgctcttgttaagtattga 487  Q
    |||||||||||| ||||||||||||||||||||    
T  34001856 aaaatggttttaagtgctcttgttaagtattga 34001888  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 33921386 - 33921441
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||| ||||||| |||| |||||||| ||| |||||||||||||    
T  33921386 tactccctccgtcccattttaactgagccatttgctcatttcgcacttattaagaa 33921441  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 34703795 - 34703731
Alignment:
Q  379 atatactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgta 444  Q
    ||||||||||||||||||||||||| | ||| ||||| ||| ||||||| ||||||||| ||||||    
T  34703795 atatactccctccgtcccaatttaagtgagcattttgttcatttcacac-tattaagaaaaatgta 34703731  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 34803621 - 34803676
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaa 437  Q
    |||||||||||||||| ||||| | |||| || ||||| |||||||||||||||||    
T  34803621 tactccctccgtcccattttaattgagcccttagctcatttcacacttattaagaa 34803676  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 3604596 - 3604640
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||||||||| || ||||||||||||||||  ||||||||||    
T  3604596 aaaaatggttttaagttctcttgttaagtattggtgcattctcca 3604640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 31265890 - 31265846
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    |||||| |||||| |||||||||||||||||||  ||||||||||    
T  31265890 aaaaatagttttaagtgctcttgttaagtattggtgcattctcca 31265846  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 27001753 - 27001689
Alignment:
Q  379 atatactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgta 444  Q
    ||||||||||||||||||||||||| | ||| ||||| ||| ||||||| ||||||||| ||||||    
T  27001753 atatactccctccgtcccaatttaagtgagcattttgttcatttcacac-tattaagaaaaatgta 27001689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 485
Target Start/End: Complemental strand, 28527155 - 28527044
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgta---ataaaggg----aaaaaatggttttacgtgctc 473  Q
    ||||||| |||||||| | |||||| || | |||||||| ||||||| ||||||||| ||||||   || ||||     |||||||||||||| ||||||    
T  28527155 atactccatccgtcccgaattaactgagtcatttgctcatttcacacatattaagaaaaatgtataaatgaaggagaaaaaaaaatggttttaagtgctc 28527056  T
Q  474 ttgttaagtatt 485  Q
    ||||||||||||    
T  28527055 ttgttaagtatt 28527044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 37528988 - 37529040
Alignment:
Q  382 tactccctccgtcccaatttaacttagccttttgctcaattcacacttattaa 434  Q
    |||||||||||||||||||||||| || | |||| ||| ||||||||||||||    
T  37528988 tactccctccgtcccaatttaactgagtcatttgttcatttcacacttattaa 37529040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 442
Target Start/End: Original strand, 6213777 - 6213827
Alignment:
Q  392 gtcccaatttaacttagccttttgctcaattcacacttattaagaacaatg 442  Q
    |||||||||||| | || |||||||||| ||||||||||||||||| ||||    
T  6213777 gtcccaatttaagtgagtcttttgctcatttcacacttattaagaaaaatg 6213827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 23497078 - 23496956
Alignment:
Q  140 aaccacattagaagcatccgattcctttaaaagattca-taaagacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctct 238  Q
    ||||||||||||||||||||||||   || || |||||  ||||||| |||||||| ||||| ||| | |||  || ||  |||||||| ||| ||||||    
T  23497078 aaccacattagaagcatccgattctgctacaaaattcagaaaagacatgtcttttgcaaattccaatcccttctgcgtagttaaagcttctgcaacctct 23496979  T
Q  239 gaatttgataatgaaaaaacttg 261  Q
    |||| || ||||||||| |||||    
T  23496978 gaatctggtaatgaaaagacttg 23496956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 320
Target Start/End: Complemental strand, 26024821 - 26024639
Alignment:
Q  140 aaccacattagaagcatccgattcctttaaaagattcataaa-gacacgtcttttgaaaatttcaaactcttacgcataaataaagcttatgctacctct 238  Q
    |||||||||||||||||| |||||   || |||||||| ||| ||||| ||||| | ||||| ||||| |||   ||||  ||||||||||   ||||||    
T  26024821 aaccacattagaagcatctgattctgctataagattcagaaaagacacatctttcgcaaattccaaacccttctacatagctaaagcttatataacctct 26024722  T
Q  239 gaatttgataatgaaaaaacttgatggcaactagcaccaacg-caacattttcactatctctcacaacaacaccaatatccca 320  Q
    |||| || ||||||| | |||||   | ||| | |||||||| |||||  |||| ||||||||| ||||||||||||| ||||    
T  26024721 gaatctggtaatgaagagacttgccaggaaccaacaccaacgacaacaccttcattatctctcaaaacaacaccaatacccca 26024639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 486
Target Start/End: Complemental strand, 28301625 - 28301513
Alignment:
Q  381 atactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgta---ataaagggaa----aaaatggttttacgtgctc 473  Q
    ||||||||||||||||   |||||| |||| ||||||||| |||||  ||||||||  ||||||   || |||| ||    |||||||||||| ||||||    
T  28301625 atactccctccgtcccggattaactaagccatttgctcaaatcacatatattaagacaaatgtataaatgaaggaaagagaaaaatggttttaagtgctc 28301526  T
Q  474 ttgttaagtattg 486  Q
    |||||||||||||    
T  28301525 ttgttaagtattg 28301513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 2882096 - 2882052
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||| ||||| |||||||||||||||||||  ||||||||||    
T  2882096 aaaaatgattttaagtgctcttgttaagtattggtgcattctcca 2882052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 28925844 - 28925888
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    |||||| |||||| |||| ||||||||||||||| ||||||||||    
T  28925844 aaaaatagttttaagtgcacttgttaagtattgatgcattctcca 28925888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 444
Target Start/End: Original strand, 45464130 - 45464194
Alignment:
Q  380 tatactccctccgtcccaatttaacttagccttttgctcaattcacacttattaagaacaatgta 444  Q
    ||||||| ||||||||||| |||| | || | |||||||| ||||||| ||||||||| ||||||    
T  45464130 tatactctctccgtcccaaattaagtgagtcatttgctcatttcacacatattaagaaaaatgta 45464194  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 9548 - 9592
Alignment:
Q  454 aaaaatggttttacgtgctcttgttaagtattgacgcattctcca 498  Q
    ||||||||||||| |||||||||||||||||| | | ||||||||    
T  9548 aaaaatggttttaagtgctcttgttaagtattaatgtattctcca 9592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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