View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8293_low_6 (Length: 501)
Name: NF8293_low_6
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8293_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Original strand, 3526963 - 3527442
Alignment:
| Q |
9 |
agtgagatgaagaggattttacctgggggctgcaatgacgacaggggaagagttggagaagaagctgaaaatttccaattacgaaatatcaggatataaa |
108 |
Q |
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| T |
3526963 |
agtgaaatgaagaggattttacctgggggctgcaatgacgacaggggaagagttggagaagaagctgaaaatttccaataaggaaatatcaggatataaa |
3527062 |
T |
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| Q |
109 |
tgcatggattgatgtaatctcattattattataaattgaattgatgaaagtagtgtactta----tatggtagaattggaaaataaaaaagtaatat-cc |
203 |
Q |
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| T |
3527063 |
tgcatgtattgatgtaatctcattattattataaattgaattgatgaaagtagtgtacttaattatatggtagaattggaaaataaaaaagtaatattcc |
3527162 |
T |
|
| Q |
204 |
tctaaaaatcaaannnnnnnncttcttcaatgggtcagtcgatttaggacggaagaagtattaaatatgttttcatttcacatacctatgcaggagctgg |
303 |
Q |
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| T |
3527163 |
tctaaaaatcaatttttttt--ttcttcaatgggtcagtcgatttaggacggaagaagtattaaatatgttttcatttcacatacctatgcaggagctgg |
3527260 |
T |
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| Q |
304 |
tattgaagttgataccacataagtatataacttggaaaacctgagtaattttcaaaccaaaagcttcaaataagccataagctgcgataagttgacagaa |
403 |
Q |
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| T |
3527261 |
tattgaagttgataccacataagtatataacttggaaaacctgagtaattttcaaaccaaaagcttcaaataagccataagctgcgataagttgacagaa |
3527360 |
T |
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| Q |
404 |
acatgttttgtgggttgcatatagatctttaattggattgcagcaaatgtctggtggttgtgtagagttaacgtagtcaatg |
485 |
Q |
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| T |
3527361 |
acatgttttgtgggttgcatatagatctttaattggattgcagcaaatgtctggtggttgtgtagagttaatgtagtcaatg |
3527442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Original strand, 3536979 - 3537010
Alignment:
| Q |
429 |
tctttaattggattgcagcaaatgtctggtgg |
460 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3536979 |
tctttaattggattgcagcaaatgtctggtgg |
3537010 |
T |
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