View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8293_low_9 (Length: 446)

Name: NF8293_low_9
Description: NF8293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8293_low_9
NF8293_low_9
[»] chr1 (13 HSPs)
chr1 (244-426)||(10227228-10227404)
chr1 (172-245)||(51848993-51849066)
chr1 (172-240)||(32811756-32811824)
chr1 (4-41)||(10227196-10227233)
chr1 (172-244)||(11570251-11570323)
chr1 (184-244)||(30530287-30530347)
chr1 (173-244)||(10302231-10302302)
chr1 (172-243)||(18540944-18541015)
chr1 (184-243)||(34002209-34002268)
chr1 (173-243)||(24136809-24136879)
chr1 (172-245)||(8464400-8464473)
chr1 (185-242)||(52369001-52369058)
chr1 (208-244)||(34157652-34157688)
[»] chr4 (11 HSPs)
chr4 (172-245)||(53356964-53357037)
chr4 (172-242)||(51540737-51540807)
chr4 (187-244)||(4489687-4489744)
chr4 (172-241)||(39880921-39880990)
chr4 (185-244)||(29406925-29406984)
chr4 (185-244)||(30890173-30890232)
chr4 (173-245)||(12241169-12241241)
chr4 (172-243)||(40756032-40756103)
chr4 (172-235)||(45274374-45274437)
chr4 (172-243)||(55996531-55996602)
chr4 (172-248)||(48743821-48743897)
[»] chr7 (10 HSPs)
chr7 (172-248)||(21153163-21153239)
chr7 (172-244)||(36920896-36920968)
chr7 (172-243)||(33212137-33212208)
chr7 (172-235)||(42640954-42641017)
chr7 (172-245)||(44596031-44596104)
chr7 (172-235)||(27075579-27075642)
chr7 (172-235)||(27202669-27202732)
chr7 (184-247)||(17500820-17500883)
chr7 (184-247)||(17552331-17552394)
chr7 (208-244)||(27330915-27330951)
[»] chr6 (8 HSPs)
chr6 (175-244)||(15098852-15098921)
chr6 (172-244)||(27102210-27102283)
chr6 (172-244)||(27144032-27144105)
chr6 (184-245)||(19788963-19789024)
chr6 (184-245)||(30622147-30622208)
chr6 (175-225)||(8778779-8778829)
chr6 (172-245)||(26391170-26391243)
chr6 (184-244)||(7693438-7693498)
[»] chr8 (9 HSPs)
chr8 (172-243)||(35819048-35819119)
chr8 (172-243)||(40719533-40719604)
chr8 (172-244)||(34996248-34996320)
chr8 (173-244)||(31806411-31806482)
chr8 (172-245)||(39153571-39153644)
chr8 (187-243)||(9550312-9550368)
chr8 (173-243)||(30608599-30608669)
chr8 (185-243)||(34494527-34494585)
chr8 (195-248)||(9048200-9048253)
[»] chr3 (13 HSPs)
chr3 (173-244)||(50745472-50745543)
chr3 (173-243)||(31017286-31017355)
chr3 (172-245)||(40159713-40159786)
chr3 (172-243)||(11335191-11335262)
chr3 (172-244)||(51032514-51032586)
chr3 (172-242)||(41369690-41369760)
chr3 (172-244)||(22153975-22154047)
chr3 (172-205)||(13724337-13724370)
chr3 (184-244)||(11233919-11233979)
chr3 (189-245)||(46953077-46953133)
chr3 (172-244)||(47988373-47988445)
chr3 (172-244)||(47997660-47997732)
chr3 (172-244)||(48006947-48007019)
[»] chr2 (7 HSPs)
chr2 (172-243)||(44059512-44059583)
chr2 (172-244)||(4723677-4723749)
chr2 (190-247)||(16051274-16051331)
chr2 (172-243)||(31635699-31635770)
chr2 (185-247)||(42554898-42554960)
chr2 (172-246)||(42665698-42665772)
chr2 (185-245)||(29192536-29192596)
[»] chr5 (10 HSPs)
chr5 (172-243)||(36415951-36416022)
chr5 (172-242)||(32425063-32425133)
chr5 (172-244)||(285337-285409)
chr5 (172-235)||(3722973-3723036)
chr5 (185-244)||(18638729-18638788)
chr5 (184-247)||(34952290-34952353)
chr5 (172-242)||(15290911-15290981)
chr5 (184-246)||(20125513-20125575)
chr5 (172-246)||(27340980-27341054)
chr5 (184-244)||(33743221-33743281)
[»] scaffold0001 (1 HSPs)
scaffold0001 (185-241)||(404872-404928)
[»] scaffold0020 (1 HSPs)
scaffold0020 (184-244)||(156029-156089)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 244 - 426
Target Start/End: Original strand, 10227228 - 10227404
Alignment:
Q  244 taaaaggaaacttccaagacaaaaattgaaagcatatacagtacaatattaagtaaggtctaaaaatggcaaa-ggaatacattggaaatatcacaattt 342  Q
    ||||||||||||||||||||||||| |||||||||||||       || |||||||||||||||||||||||| || |||||||||||||||||||||||    
T  10227228 taaaaggaaacttccaagacaaaaactgaaagcatatac-------taataagtaaggtctaaaaatggcaaaagggatacattggaaatatcacaattt 10227320  T
Q  343 tatgtctcaatcaagacatgcaccaaaccaaaagaccaatattttgtcattactatgttggtgatgattccagtgagggtcagt 426  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227321 tttgtctcagtcaagacatgcaccaaaccaaaagaccaatattttgtcattactatgttggtgatgattccagtgagggtcagt 10227404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 51848993 - 51849066
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||| ||| || |||||||||    
T  51848993 gaccaatcaaataagagaaaatcaaagttgtcatagaggttgtaccaaagagttgtatatacatcactactcta 51849066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 32811824 - 32811756
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataacta 240  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||| ||| ||||||||| |||| ||||    
T  32811824 gaccaatcaaatgagagaaaaccaaagttgtcattaaagttgtactaaagagttgtacaaatatcacta 32811756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 10227196 - 10227233
Alignment:
Q  4 acaaacgaaggtatgacagagaaaccatcaaataaaag 41  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10227196 acaaacgaaggtataacagagaaaccatcaaataaaag 10227233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 11570323 - 11570251
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||| ||| ||||||| |  |||||||||||  ||||||||| ||| |||||||||||||| ||||||||    
T  11570323 gaccaatcaaaagagagaagacaaaagttgtcatgaaagttgtacgaaagagttgtacatatatcactactct 11570251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 30530347 - 30530287
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    |||||||||| |||||||||||  ||||||| |||||  ||||||||||||| ||||||||    
T  30530347 gagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 30530287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 10302302 - 10302231
Alignment:
Q  173 accaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    |||||| ||| ||||||||||||||||| ||||  ||||||||||||| |||||| ||| ||| | ||||||    
T  10302302 accaatcaaaagagagaaaatcaaagttatcatgaaagttgtaccaaagagttgtccatttatcaatactct 10302231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 18541015 - 18540944
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||| |||  |||||||||||||||||||  |  ||||||||||||||||||| || |||| |||||||    
T  18541015 gaccaatcaaagaagagaaaatcaaagttgtccaaagagttgtaccaaaaagttgttcaaatatcactactc 18540944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 34002268 - 34002209
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    |||||||||| |||||||| ||  ||||||| ||||| |||||||||||||| |||||||    
T  34002268 gagagaaaatgaaagttgtgatcaaagttgtcccaaatagttgtacatatatcactactc 34002209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 24136879 - 24136809
Alignment:
Q  173 accaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    |||||| |||| |||||||| |||| |||||||| || |||||| ||||||||||| | |||| |||||||    
T  24136879 accaatcaaataagagaaaaacaaatttgtcataaaaattgtactaaaaagttgtataaatatcactactc 24136809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 8464473 - 8464400
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    ||||||| ||| |||||||||| |||||||||||  ||||||  ||||   ||||||||||||| |||||||||    
T  8464473 gaccaataaaaagagagaaaatgaaagttgtcatcaaagttggcccaagtggttgtacatatatcactactcta 8464400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 52369058 - 52369001
Alignment:
Q  185 agagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactact 242  Q
    |||| |||| |||||||||||  ||||||||| ||| |||||||||||||| ||||||    
T  52369058 agagcaaatgaaagttgtcatcaaagttgtactaaatagttgtacatatatcactact 52369001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 34157652 - 34157688
Alignment:
Q  208 aagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  34157652 aagttgtaccaaagagttgtacatatatcactactct 34157688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 53357037 - 53356964
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  53357037 gaccaatcaaatgagagacaatcaaagttgtcatagaagttgtaccaaagagttgtacatatatcactactcta 53356964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 51540807 - 51540737
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactact 242  Q
    ||||||| ||| ||||||||| |||| |||||||| ||||||||||||| ||||||| |||||| ||||||    
T  51540807 gaccaatcaaaagagagaaaaccaaaattgtcataaaagttgtaccaaagagttgtatatatatcactact 51540737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 4489744 - 4489687
Alignment:
Q  187 agaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||| |||||||||||  ||||||||||||| |||||||||||||| ||||||||    
T  4489744 agaaaattaaagttgtcatgaaagttgtaccaaagagttgtacatatatcactactct 4489687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 39880990 - 39880921
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactac 241  Q
    ||||||| ||| ||||||||| ||||||||||||  ||||||||| ||| |||||||||||||| |||||    
T  39880990 gaccaatcaaaagagagaaaaccaaagttgtcatgaaagttgtacgaaagagttgtacatatatcactac 39880921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 29406984 - 29406925
Alignment:
Q  185 agagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    |||||||| |||| |||||||  ||||||||||||| |||||||||||||| ||||||||    
T  29406984 agagaaaaccaaaattgtcatgaaagttgtaccaaagagttgtacatatatcactactct 29406925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 30890232 - 30890173
Alignment:
Q  185 agagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    |||||||| ||||||||||||| || |||||||||| |||||||||||||| ||| ||||    
T  30890232 agagaaaaccaaagttgtcataaaaattgtaccaaagagttgtacatatatcactgctct 30890173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 12241169 - 12241241
Alignment:
Q  173 accaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    |||||| ||| |||||||||  |||||||||||| | ||||||| ||| ||||||||| |||| |||||||||    
T  12241169 accaatcaaaagagagaaaaataaagttgtcataaaggttgtacaaaagagttgtacaaatatcactactcta 12241241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 40756032 - 40756103
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||| |||  |||||||||||||||||||  |  ||||||||||||||||||| || |||| |||||||    
T  40756032 gaccaatcaaagaagagaaaatcaaagttgtccaaagagttgtaccaaaaagttgttcaaatatcactactc 40756103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 45274374 - 45274437
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatat 235  Q
    ||||||| ||| |||||||||| | |||||||||  ||||||| ||||| ||||||||||||||    
T  45274374 gaccaatgaaaagagagaaaatgagagttgtcatcaaagttgtcccaaatagttgtacatatat 45274437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 55996531 - 55996602
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||| ||| || |||||||  ||||||||||   | ||||||||||||||||||||||||| |||||||    
T  55996531 gaccaatcaaaagatagaaaattgaagttgtcattataattgtaccaaaaagttgtacatatatcactactc 55996602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 48743821 - 48743897
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactctaaaa 248  Q
    ||||||| |||  |||||||| |||||||||||| ||||||||    ||||| |||||| |||| ||||||||||||    
T  48743821 gaccaatcaaaatagagaaaaacaaagttgtcatggaagttgtttagaaaagctgtacaaatatcactactctaaaa 48743897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 21153163 - 21153239
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactctaaaa 248  Q
    ||||||| ||| ||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||    
T  21153163 gaccaatcaaaagagagaaaatcaaagttgtcatgaaagttgtaccaaaaagttgtacatatatcactactctaaaa 21153239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 36920896 - 36920968
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||||    
T  36920896 gaccaatcaaatgagagaaaatcaaagttgtaataaaagttgtaccaaagagttgtacatatatcactactct 36920968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 33212137 - 33212208
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||| |||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  33212137 gaccaatcaaatgagagacaattaaagttgtcatagaagttgtaccaaagagttgtacatatatcactactc 33212208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 42640954 - 42641017
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatat 235  Q
    ||||||| |||  |||||||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  42640954 gaccaatcaaaaaagagaaaatcaaagttatcataaaagttgtaccaaagagttgtacatatat 42641017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 44596104 - 44596031
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    ||||||| ||||||||||||| ||||||||||||| || |||||||||| | || |||| |||| |||||||||    
T  44596104 gaccaatcaaatgagagaaaaccaaagttgtcataaaatttgtaccaaagaattatacaaatatcactactcta 44596031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 27075579 - 27075642
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatat 235  Q
    ||||||| ||| ||||||||| |||| || ||||| ||||||||||||| ||||||||||||||    
T  27075579 gaccaatcaaaagagagaaaaccaaaattatcataaaagttgtaccaaagagttgtacatatat 27075642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 27202732 - 27202669
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatat 235  Q
    ||||||| ||| ||||||||| |||| || ||||| ||||||||||||| ||||||||||||||    
T  27202732 gaccaatcaaaagagagaaaaccaaaattatcataaaagttgtaccaaagagttgtacatatat 27202669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 17500820 - 17500883
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactctaaa 247  Q
    |||||||||| |||||| ||||  ||||||| |||||  ||||||||||||| |||||||||||    
T  17500820 gagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactctaaa 17500883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 17552394 - 17552331
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactctaaa 247  Q
    |||||||||| |||||| ||||  ||||||| |||||  ||||||||||||| |||||||||||    
T  17552394 gagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactctaaa 17552331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 27330951 - 27330915
Alignment:
Q  208 aagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  27330951 aagttgtaccaaagagttgtacatatatcactactct 27330915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 15098852 - 15098921
Alignment:
Q  175 caattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||    
T  15098852 caatcaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaaattgtacatatatcacaactct 15098921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 27102210 - 27102283
Alignment:
Q  172 gaccaattaaat-gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||||||| ||||||||| |||| ||||||||    
T  27102210 gaccaattaaaaagagagaaaatcaaagttgtcatgaaagttgtaccaaagagttgtacaaatattactactct 27102283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 27144032 - 27144105
Alignment:
Q  172 gaccaattaaat-gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||||||| ||||||||| |||| ||||||||    
T  27144032 gaccaattaaaaagagagaaaatcaaagttgtcatgaaagttgtaccaaagagttgtacaaatattactactct 27144105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 19789024 - 19788963
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    |||||||||||| |||||||||  ||||||| |||||  ||||||||||||| |||||||||    
T  19789024 gagagaaaatcagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactcta 19788963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 30622147 - 30622208
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    |||| ||||| |||||||||||  ||||||| ||||| |||||||||||||| |||||||||    
T  30622147 gagaaaaaatgaaagttgtcatcaaagttgtcccaaatagttgtacatatatcactactcta 30622208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 8778829 - 8778779
Alignment:
Q  175 caattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagtt 225  Q
    |||| ||| ||||||||||| ||||||||||| ||||||||||||| ||||    
T  8778829 caatcaaaagagagaaaatctaagttgtcataaaagttgtaccaaatagtt 8778779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 26391243 - 26391170
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    ||||||| ||| || ||||||  |||||||||||  ||||| ||||||| |||||| ||||||| |||||||||    
T  26391243 gaccaatcaaaagatagaaaactaaagttgtcatgaaagttataccaaagagttgttcatatatcactactcta 26391170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 7693438 - 7693498
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    |||||||||| ||| |||||||  ||||||| |||||  ||||||||||||| ||||||||    
T  7693438 gagagaaaataaaaattgtcatcaaagttgtcccaaatggttgtacatatatcactactct 7693498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 35819048 - 35819119
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||||    
T  35819048 gaccaatcaaatgagagacaatcaaaattgtcatagaagttgtaccaaaaagttgtacatagatcactactc 35819119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 40719604 - 40719533
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||| ||| ||||||||| ||||||||||||| ||||||||| ||| |||||||||||||| |||||||    
T  40719604 gaccaatcaaaagagagaaaaccaaagttgtcataaaagttgtacgaaagagttgtacatatatcactactc 40719533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 34996320 - 34996248
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||| ||| ||||| |||| |||||||||||  ||||||||||||| |||||||||||||| ||||||||    
T  34996320 gaccaatgaaaagagagcaaatgaaagttgtcatcaaagttgtaccaaatagttgtacatatatcactactct 34996248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 31806411 - 31806482
Alignment:
Q  173 accaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    |||||| |||||||||||||  |||||||| ||| ||||||||||||| |||| ||||||||| ||||||||    
T  31806411 accaatcaaatgagagaaaactaaagttgtaataaaagttgtaccaaagagttatacatatatcactactct 31806482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 39153644 - 39153571
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    ||||||| ||| ||||||||||||||||| ||||  ||||| ||| ||| |||||||||||||| |||||||||    
T  39153644 gaccaatcaaaagagagaaaatcaaagttatcatgaaagttatactaaagagttgtacatatatcactactcta 39153571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 9550368 - 9550312
Alignment:
Q  187 agaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||| |||||||||||  |||||||| |||| |||||||||||||| |||||||    
T  9550368 agaaaattaaagttgtcatgaaagttgtatcaaagagttgtacatatatcactactc 9550312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 30608669 - 30608599
Alignment:
Q  173 accaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    |||||| ||| || |||||| ||||||||||||| | ||||||| ||| ||||||||| |||| |||||||    
T  30608669 accaatcaaaagatagaaaaacaaagttgtcataaaggttgtacaaaagagttgtacaaatatcactactc 30608599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 34494585 - 34494527
Alignment:
Q  185 agagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||||||||||||||||||  |||||||| ||| || |||||| |||| |||||||    
T  34494585 agagaaaatcaaagttgtcataagagttgtactaaagagatgtacaaatatcactactc 34494527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 9048253 - 9048200
Alignment:
Q  195 aaagttgtcatagaagttgtaccaaaaagttgtacatatataactactctaaaa 248  Q
    |||||||||||| | ||||||| ||| ||||||||| |||| ||||||||||||    
T  9048253 aaagttgtcataaatgttgtacaaaagagttgtacaaatatcactactctaaaa 9048200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 50745472 - 50745543
Alignment:
Q  173 accaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  50745472 accaatcaaatgagagacaattaaagttgtcatagaagttgtaccaaagagttgtacatatattactactct 50745543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 31017355 - 31017286
Alignment:
Q  173 accaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    |||||| ||||||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||    
T  31017355 accaatcaaatgagagaaaatcaaagttgtcatagaagtt-tatcaaagagttgtacatatatcactactc 31017286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 40159786 - 40159713
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    ||||||| ||| ||||||||| ||||||||||||  ||||||||||||| |||||||||||||| |||||||||    
T  40159786 gaccaatcaaaagagagaaaaccaaagttgtcatgaaagttgtaccaaagagttgtacatatatcactactcta 40159713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 11335262 - 11335191
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||| |||||||||||||  |||||||| ||| ||||||||||||| |||||||||||||| |||||||    
T  11335262 gaccaatcaaatgagagaaaactaaagttgtaataaaagttgtaccaaagagttgtacatatatcactactc 11335191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 51032586 - 51032514
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||| ||| || ||||||| |||||||||||  ||||||||  |||||||||||||||||| ||||||||    
T  51032586 gaccaatcaaaagatagaaaattaaagttgtcatgaaagttgtataaaaaagttgtacatatatcactactct 51032514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 41369690 - 41369760
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactact 242  Q
    ||||||| ||| |||||||||  |||||||||||| ||||||||||||| |  ||||||||||| ||||||    
T  41369690 gaccaatcaaaagagagaaaactaaagttgtcataaaagttgtaccaaagaagtgtacatatatcactact 41369760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 22153975 - 22154047
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||| ||| ||||| |||| |||||||||||  |||||||||||||  |||||||| |||| ||||||||    
T  22153975 gaccaatgaaaagagagcaaatgaaagttgtcattaaagttgtaccaaatggttgtacaaatatcactactct 22154047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 13724370 - 13724337
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcat 205  Q
    ||||||||||| ||||||||||||||||||||||    
T  13724370 gaccaattaaaagagagaaaatcaaagttgtcat 13724337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 11233979 - 11233919
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||| |||| |||||||||||  |||||||||||||  ||||||||||||| | ||||||    
T  11233979 gagagtaaataaaagttgtcatcaaagttgtaccaaatggttgtacatatatcagtactct 11233919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 46953077 - 46953133
Alignment:
Q  189 aaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    |||| ||||||||||||| |||||||| |||| |||||| || |||| |||||||||    
T  46953077 aaaaacaaagttgtcataaaagttgtatcaaatagttgttcaaatatcactactcta 46953133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 47988445 - 47988373
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||| |||  |||||||||||||||||||  |  ||||||||||||||| ||| || |||| ||||||||    
T  47988445 gaccaatcaaagaagagaaaatcaaagttgtccaaagagttgtaccaaaaagctgttcaaatatcactactct 47988373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 47997732 - 47997660
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||| |||  |||||||||||||||||||  |  ||||||||||||||| ||| || |||| ||||||||    
T  47997732 gaccaatcaaagaagagaaaatcaaagttgtccaaagagttgtaccaaaaagctgttcaaatatcactactct 47997660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 48007019 - 48006947
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||| |||  |||||||||||||||||||  |  ||||||||||||||| ||| || |||| ||||||||    
T  48007019 gaccaatcaaagaagagaaaatcaaagttgtccaaagagttgtaccaaaaagctgttcaaatatcactactct 48006947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 44059512 - 44059583
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||| || |||||||||| ||||||||||| ||||||||||||||||||||||||| |||| |||||||    
T  44059512 gaccaatcaattgagagaaaaccaaagttgtcacagaagttgtaccaaaaagttgtacaaatatcactactc 44059583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 4723677 - 4723749
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||| ||| |||||||||  |||||||| ||| ||||||||||||| |||||||||||||| ||| ||||    
T  4723677 gaccaatcaaaagagagaaaactaaagttgttataaaagttgtaccaaagagttgtacatatatcactgctct 4723749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 16051331 - 16051274
Alignment:
Q  190 aaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactctaaa 247  Q
    |||| ||||||||||||  ||||||||||||||| |||||| |||| |||||||||||    
T  16051331 aaattaaagttgtcataagagttgtaccaaaaagatgtacaaatatcactactctaaa 16051274  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 31635770 - 31635699
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||| |||  |||||||||||||||||||  |  ||||||||||||||||||| || |||| |||||||    
T  31635770 gaccaatcaaagaagagaaaatcaaagttgtccaaagagttgtaccaaaaagttgttcaaatatcactactc 31635699  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 42554898 - 42554960
Alignment:
Q  185 agagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactctaaa 247  Q
    ||||||||| |||||||| ||  |||||||||||||  ||||||| ||||| |||||||||||    
T  42554898 agagaaaatgaaagttgttatcaaagttgtaccaaatggttgtacttatatcactactctaaa 42554960  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 42665772 - 42665698
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactctaa 246  Q
    ||||||| |||  |||| |||| |||||||||||  |||||||||||||  |||||||| |||| ||||||||||    
T  42665772 gaccaatgaaaaaagagcaaatgaaagttgtcatcaaagttgtaccaaatggttgtacaaatatcactactctaa 42665698  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 29192596 - 29192536
Alignment:
Q  185 agagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactcta 245  Q
    |||||||| ||||||||||||| ||||||||  ||| || |||||| |||| |||||||||    
T  29192596 agagaaaaacaaagttgtcataaaagttgtaagaaagagatgtacaaatatcactactcta 29192536  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 36416022 - 36415951
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactc 243  Q
    ||||||| ||| ||||||||| ||||||||||||  ||||||||||||| |||||||||||||| |||||||    
T  36416022 gaccaatcaaaagagagaaaaccaaagttgtcatgaaagttgtaccaaagagttgtacatatatcactactc 36415951  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 32425063 - 32425133
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactact 242  Q
    ||||||| ||| || ||||||| |||||||||||  ||||||||||||| |||||||||||| | ||||||    
T  32425063 gaccaatcaaaagatagaaaattaaagttgtcatgaaagttgtaccaaatagttgtacatatgtcactact 32425133  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 285337 - 285409
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||| ||| || ||||||| ||||||| |||  ||||||||| ||| |||||||||||||| ||||||||    
T  285337 gaccaatcaaaagatagaaaattaaagttggcatgaaagttgtactaaagagttgtacatatatcactactct 285409  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 3723036 - 3722973
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatat 235  Q
    ||||||| ||| |||||||||| |||||||||||  ||||||| |||||  |||||||||||||    
T  3723036 gaccaataaaaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatat 3722973  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 18638788 - 18638729
Alignment:
Q  185 agagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||||||| |||||||||||  ||||||| |||||  ||||||||||||| ||||||||    
T  18638788 agagaaaataaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 18638729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 34952353 - 34952290
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactctaaa 247  Q
    |||||||||| |||||||||||  ||||| | ||||| | |||||||||||| |||||||||||    
T  34952353 gagagaaaataaaagttgtcatcaaagttatcccaaataattgtacatatatcactactctaaa 34952290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 15290981 - 15290911
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactact 242  Q
    ||||||| ||| | |||||||| ||| || | ||| ||||||||||||| |||||||||||||| ||||||    
T  15290981 gaccaatcaaaagggagaaaattaaaattattataaaagttgtaccaaagagttgtacatatatcactact 15290911  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 20125513 - 20125575
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactctaa 246  Q
    |||||||||| |||||||||||  ||||||| ||||| ||||||| |||||| || |||||||    
T  20125513 gagagaaaatgaaagttgtcatcaaagttgtcccaaatagttgtatatatatcaccactctaa 20125575  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 27340980 - 27341054
Alignment:
Q  172 gaccaattaaatgagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactctaa 246  Q
    ||||||| ||| ||||| |||| |||||||||||  || ||||||||||   |||||||||||| ||||||||||    
T  27340980 gaccaataaaaagagagcaaatgaaagttgtcatcaaaattgtaccaaatgattgtacatatatcactactctaa 27341054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 33743281 - 33743221
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    ||||| |||| |||||||||||  |||||||||||||   |||||||||||| ||||||||    
T  33743281 gagagcaaataaaagttgtcatcaaagttgtaccaaatgattgtacatatatcactactct 33743221  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 404872 - 404928
Alignment:
Q  185 agagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactac 241  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||||| |||| |||||    
T  404872 agagaaaaacaaagttgtcataaaagttgtaccaaagagttgtacaaatatcactac 404928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 156029 - 156089
Alignment:
Q  184 gagagaaaatcaaagttgtcatagaagttgtaccaaaaagttgtacatatataactactct 244  Q
    |||||||||| | |||||||||  ||||||| |||||  ||||||||||||| ||||||||    
T  156029 gagagaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 156089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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