View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_high_8 (Length: 331)
Name: NF8294A_high_8
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 168 - 307
Target Start/End: Original strand, 4027587 - 4027727
Alignment:
| Q |
168 |
gaaggtcacaaaaaggttttggtcttacatcacatctcatacaatatctacaaatatagaacgaaaaggtaaaaatc-atgattacatacggtttcattg |
266 |
Q |
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| T |
4027587 |
gaaggtcacaaaaaggttttggtcttacttcacagctcatacaatatctacaaatatagagctaagaagtaaaaaaccatgattacatactgtttcattg |
4027686 |
T |
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| Q |
267 |
aataattttaaagtttcaggatcaattcgtaacacaaattc |
307 |
Q |
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| T |
4027687 |
aaaaatcttaaagtttcaggatcaattcgtaacacaaattc |
4027727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 4013299 - 4013366
Alignment:
| Q |
162 |
aaggcagaaggtcacaaaaaggttttggtcttacatcacatctcatacaatatctacaaatatagaac |
229 |
Q |
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| T |
4013299 |
aaggaagaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatatagaac |
4013366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 3951293 - 3951222
Alignment:
| Q |
158 |
atataaggcagaaggtcacaaaaaggttttggtcttacatcacatctcatacaatatctacaaatatagaac |
229 |
Q |
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| T |
3951293 |
atatatggaagaaggtcacaaaaaagtttttgtcttactttaaagctctaacaatatctacaaatatagaac |
3951222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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