View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_1 (Length: 868)
Name: NF8294A_low_1
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 704; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 21 - 867
Target Start/End: Complemental strand, 3660197 - 3659355
Alignment:
| Q |
21 |
aagaggttgctgtgaaaaagcgtatgcattatgttaaagcggtaaagagttcgagatctggtcagaaagttcggagaccaagaaaaccagaaggtgatga |
120 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3660197 |
aagaggttgctgcgaaaaagcgtatgcattatgttaaagcggtaaagagttcgagatctggtcagaaagttcagagaccaagaaaaccagaaggtgatga |
3660098 |
T |
|
| Q |
121 |
tgatgagaagaagaagctgttgaagaatttgagggggagagttgagaagattagcaaattgtgtaaggtttatggagatgatgaggaaggtttagagaat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3660097 |
tgatgagaagaagaagctgttgaagaatttgagggggagagttgagaagattagcaaattgtgtaaggtttatggagatgatgaggaaggtttagagaat |
3659998 |
T |
|
| Q |
221 |
gaggagagcgttcatgat------------tatgatgacgatggagtaactgatgttgtggtcgctagaagggatgggaacaaaaatggtgtctttgttc |
308 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659997 |
gaggagagcgttcatgatgatgatgatgattatgatgacgatggagtaactgatgttgtggtcgctagaagggatgggaacaaaaatggtgtctttgttc |
3659898 |
T |
|
| Q |
309 |
aaaggcaagtaattcaacctagagtgaagaagagtgtgagatttgcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaatcagatgg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3659897 |
aaaggcaagtaattcaacctagagtgaagaagagtgtgagatttgcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaatcggatgg |
3659798 |
T |
|
| Q |
409 |
aagttcctcaaatgatgaccaaggcgaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttatcagggtgttgaagatgacgaggaa |
508 |
Q |
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| T |
3659797 |
aagttcctcaaatgatgaccaaggcgaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttctcagggtgttgaagatgacgaggaa |
3659698 |
T |
|
| Q |
509 |
gtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctg |
608 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3659697 |
gtgctggtgggggacagtggaggatcaacacgtagtagcgatgacggagatatagtg---------------gcacaccaagagaagattctgttctctg |
3659613 |
T |
|
| Q |
609 |
ctccattgctacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggcttt |
708 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3659612 |
ctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcattacattatattcatgtaaggcttt |
3659513 |
T |
|
| Q |
709 |
gtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaattgg |
808 |
Q |
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| T |
3659512 |
gtctaccctttgatttgtaatgtttgattggattctaggacaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaattgg |
3659413 |
T |
|
| Q |
809 |
catatgattcataaatggatttgttatgttccactttaattggcatttagataattgtg |
867 |
Q |
| |
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||| || || |||||||||||||||||||||||||| |||||| |||||||||| |||| |
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| T |
3659412 |
catttggtt-ataaatggatttgttatgttccacttcaattggaatttagataagtgtg |
3659355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 506 - 850
Target Start/End: Complemental strand, 3653449 - 3653106
Alignment:
| Q |
506 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
605 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3653449 |
gaagttctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagtagtttcaagcacaccaagagaagattctgttct |
3653350 |
T |
|
| Q |
606 |
ctgctccattgctacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
705 |
Q |
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| T |
3653349 |
ctgctccactgccgcttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaacttttgacgtgaaatgtcgttacattatattcatgtaaggt |
3653250 |
T |
|
| Q |
706 |
tttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaat |
805 |
Q |
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| T |
3653249 |
tttgtttaccctttgatttgtaatgtttgat--tattctaggagaatttgactggacttagattgtttggtaactggtagatctcatctgcgtgtctaat |
3653152 |
T |
|
| Q |
806 |
tggcatatgattc-ataaatggatttgttatgttccactttaattg |
850 |
Q |
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|||||| || ||| |||||||||||||||||||||||||| ||||| |
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| T |
3653151 |
tggcatttggttctataaatggatttgttatgttccacttcaattg |
3653106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 506 - 763
Target Start/End: Complemental strand, 3657452 - 3657199
Alignment:
| Q |
506 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
605 |
Q |
| |
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|||||||||||||||||| ||| ||||||||| ||||| || | | | |||||| | |||||||||||||||| | ||| || |||||| ||||||||| |
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| T |
3657452 |
gaagtgctggtggaggacggtgaaggatcaacgcgtagcagtggttatggagattgactgaaagagcagtttcaggtacatcatgagaagcttctgttct |
3657353 |
T |
|
| Q |
606 |
ctgctccattgctacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
705 |
Q |
| |
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| ||| |||||| ||||||||||| |||| || ||||||||||| || ||||| | |||| || |||||||| | | |||| |||| |||||| |
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| T |
3657352 |
cagctgcattgccgcttaaaatggagagca----agacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaatta---tcatttaaggc |
3657260 |
T |
|
| Q |
706 |
tttgt---ctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggact |
763 |
Q |
| |
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||||| | | ||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
3657259 |
tttgtttgtttacatttgatttgtaatgtttgactgtattctaggagaacttgattggact |
3657199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 525 - 666
Target Start/End: Complemental strand, 3649322 - 3649181
Alignment:
| Q |
525 |
gtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccattgctacttaa |
624 |
Q |
| |
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||||||||||||| |||||||| | | | |||||| ||||||||| |||||||| | ||| || |||||| ||||| |||| | || ||||| |||||| |
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| T |
3649322 |
gtggaggatcaacgcgtagtagtggttatggagattgagtgaaagatcagtttcaggtacatcatgagaagcttctgctctcagttctattgccacttaa |
3649223 |
T |
|
| Q |
625 |
aatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
666 |
Q |
| |
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| T |
3649222 |
gatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
3649181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 608 - 666
Target Start/End: Complemental strand, 36164634 - 36164576
Alignment:
| Q |
608 |
gctccattgctacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
666 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
36164634 |
gctccattgccgcttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
36164576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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