View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_10 (Length: 479)
Name: NF8294A_low_10
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 232 - 479
Target Start/End: Original strand, 2787129 - 2787374
Alignment:
| Q |
232 |
aatatcataaaatattaaatcacataaacttcacattgattattttgatacaaacgtcaatggataatataatcgaccaagaaaagtacaaacaaatata |
331 |
Q |
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| T |
2787129 |
aatatcacaaaatattaaattacataaacttcacattgattattttgatacaaacgtcaatggataatataattgaccaagaaaagtacaaacaaatata |
2787228 |
T |
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| Q |
332 |
caaattaaatcaaacatatatactaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgctacaaacaatt |
431 |
Q |
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| T |
2787229 |
caaattaaatcaaacatat--actaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgctacaaacaatt |
2787326 |
T |
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| Q |
432 |
ccaaccatcaatggaaaactctccataacttgatccatttccctttca |
479 |
Q |
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| T |
2787327 |
ccaaccatcaatggaaaactctccataacttgatccatttccctttca |
2787374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 12171428 - 12171211
Alignment:
| Q |
15 |
atggacatcaaaggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct |
112 |
Q |
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| T |
12171428 |
atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct |
12171329 |
T |
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| Q |
113 |
tgtcctcggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattcagcatttc |
212 |
Q |
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| T |
12171328 |
tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc |
12171229 |
T |
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| Q |
213 |
cgacaaagaaaatgagaa |
230 |
Q |
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| T |
12171228 |
cgacaaagaaaatgagaa |
12171211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 12415856 - 12415639
Alignment:
| Q |
15 |
atggacatcaaaggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct |
112 |
Q |
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| T |
12415856 |
atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct |
12415757 |
T |
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| Q |
113 |
tgtcctcggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattcagcatttc |
212 |
Q |
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| T |
12415756 |
tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc |
12415657 |
T |
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| Q |
213 |
cgacaaagaaaatgagaa |
230 |
Q |
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| T |
12415656 |
cgacaaagaaaatgagaa |
12415639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 343 - 469
Target Start/End: Complemental strand, 19578356 - 19578230
Alignment:
| Q |
343 |
aaacatatatactaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgctacaaacaattccaaccatcaa |
442 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
19578356 |
aaacatatatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaataaggaacaaaccgctacaaattattccaaccatcaa |
19578257 |
T |
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| Q |
443 |
tggaaaactctccataacttgatccat |
469 |
Q |
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| T |
19578256 |
aggaaaactctccataacttgatccat |
19578230 |
T |
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