View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_100 (Length: 313)
Name: NF8294A_low_100
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_100 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 35489919 - 35489625
Alignment:
| Q |
19 |
ggaagtatgattgctatcaaacttggagttagcggtgaaggctcgtttacaaaaaccgaagctgatcttctcttagtctttatatgtctatatgttgcgg |
118 |
Q |
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| T |
35489919 |
ggaagtatgattgctatcaaacttggagttagcggtgaaggctcgtttacaaaaactgaagctgatcttctcttagtctttatatgtctatatgttgcgg |
35489820 |
T |
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| Q |
119 |
catttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaa |
218 |
Q |
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| T |
35489819 |
catttgcatggtcttggggtgcgctgggatggttagttcccagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaa |
35489720 |
T |
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| Q |
219 |
catgttgttcccctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggacttttcttcttctttgctggctttgtgctca |
313 |
Q |
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| T |
35489719 |
catgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggacttttcttcttctttgctggctttgtgctca |
35489625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 282
Target Start/End: Complemental strand, 18233999 - 18233837
Alignment:
| Q |
120 |
atttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaac |
219 |
Q |
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| T |
18233999 |
atttgcatggtcttggggtcctctaggttggttggtgccaagtgaaatattcccactcgaagttcgttctgcggctcaaagtatcaatgtctctgttaac |
18233900 |
T |
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| Q |
220 |
atgttgttcccctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttgga |
282 |
Q |
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| T |
18233899 |
atgatttgcacctttatcattgctcaaattttcactacaatgctttgtcacatgaagtttgga |
18233837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 75 - 309
Target Start/End: Original strand, 14233080 - 14233314
Alignment:
| Q |
75 |
cgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctct |
174 |
Q |
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| T |
14233080 |
cgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaaatatgcgct |
14233179 |
T |
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| Q |
175 |
cttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcccctttatcattgctcaagtttttcttaccatgctttgtcacttga |
274 |
Q |
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| T |
14233180 |
ctagaggttcgaccagcaggtcaagctataaatgttgcggtgaacatgttcttcacatttatgattgctcaagtcttcctaaccatgctttgtcacttga |
14233279 |
T |
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| Q |
275 |
agtttggacttttcttcttctttgctggctttgtg |
309 |
Q |
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| T |
14233280 |
agtttggccttttctttttctttgctggttttgtg |
14233314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 75 - 309
Target Start/End: Original strand, 14242754 - 14242988
Alignment:
| Q |
75 |
cgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctct |
174 |
Q |
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| T |
14242754 |
cgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaagtatgcgct |
14242853 |
T |
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| Q |
175 |
cttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcccctttatcattgctcaagtttttcttaccatgctttgtcacttga |
274 |
Q |
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| T |
14242854 |
ctagaggttcgaccagcaggtcaagctataaatgttgcggtgaacatgttcttcacatttatgattgctcaagtcttcctaaccatgctttgtcacttga |
14242953 |
T |
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| Q |
275 |
agtttggacttttcttcttctttgctggctttgtg |
309 |
Q |
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| T |
14242954 |
agtttggccttttctttttctttgctggttttgtg |
14242988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 76 - 276
Target Start/End: Original strand, 51580515 - 51580714
Alignment:
| Q |
76 |
gaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctc |
175 |
Q |
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| T |
51580515 |
gaagccgagcttcttttattctttataagtgcatatgttgcggcatttgctgggtcttggggcccgctaggttggtcgga-ccaagtgaaatttgttctc |
51580613 |
T |
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| Q |
176 |
ttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcccctttatcattgctcaagtttttcttaccatgctttgtcacttgaa |
275 |
Q |
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|||| || |||||||||||||||||| ||||||||| ||||||||||| ||| | ||| | ||||||||||||| || | |||||||||||||||||| |
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| T |
51580614 |
ttgaggtttgatctgcaggtcaagctatcaatgttgccgtgaacatgttattcacatttgttgttgctcaagttttcctcaacatgctttgtcacttgaa |
51580713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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