View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8294A_low_116 (Length: 294)
Name: NF8294A_low_116
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_116 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 46240171 - 46239893
Alignment:
| Q |
1 |
aatggccaacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240171 |
aatggcctacatccatttgtaaacccttttttgcaaccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacat |
46240072 |
T |
|
| Q |
101 |
tgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctg |
200 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240071 |
tgatactcacactatttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctg |
46239972 |
T |
|
| Q |
201 |
agctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcc |
279 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46239971 |
agctatctgtttagctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcc |
46239893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 271
Target Start/End: Complemental strand, 23541541 - 23541295
Alignment:
| Q |
25 |
ccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggac |
124 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| |||||||||||||| | | ||| ||| ||||| ||| | || |||| | ||||||| | |
|
|
| T |
23541541 |
cctttcttacagccatcaaaacaaaagtagaaagaaccaaacctgggttggattgatggggttggtctatccacatttatcttcacattatttccagcat |
23541442 |
T |
|
| Q |
125 |
acactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgc |
224 |
Q |
| |
|
||| ||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| |||||||| ||||||| ||||||||||| ||||| || |
|
|
| T |
23541441 |
tcacccttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagc |
23541342 |
T |
|
| Q |
225 |
cctacctttggtgatacccactgcatgattcgtcctcatgtcatcca |
271 |
Q |
| |
|
|||||| | || |||||||||||||| || |||||||||||||||| |
|
|
| T |
23541341 |
cctacccattgtaatacccactgcatggtttgtcctcatgtcatcca |
23541295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 3437308 - 3437574
Alignment:
| Q |
1 |
aatggccaacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437308 |
aatggcctacatccatttgtaaacccttttttgcatccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacat |
3437407 |
T |
|
| Q |
101 |
tgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437408 |
tgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctg |
3437507 |
T |
|
| Q |
201 |
agctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcc |
279 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3437508 |
agctatctgttttgctttccacgccc------------tacccactgcatgattcgtcctcatgtcatcgatgatgtcc |
3437574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University