View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_119 (Length: 293)
Name: NF8294A_low_119
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_119 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 293
Target Start/End: Complemental strand, 32707425 - 32707155
Alignment:
| Q |
22 |
ctgccatgacagttcattcatgcaaatgtagcattcctttggttaactagatgatggctctcacaatcttaactaaaccttaatgatgaaatatcaatca |
121 |
Q |
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| T |
32707425 |
ctgccatgacagttcattcatgcaaatgtagcattcctttggttaactagatgatggctctcacaatcttagctaa-ccttaatgatgaaatatcaatca |
32707327 |
T |
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| Q |
122 |
acaaagaatgaaaattacatgtatgcaaatagccaaatttattccatgtaggctcgtcactcttttttaaaattcttgaatagacataaagatattccca |
221 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
32707326 |
acaaagaatgaaaattacttgtgtgcaaatagccaaatttattccatgtagtctcgtcactctttttaaaaattcttgaatagacataaatatattccca |
32707227 |
T |
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| Q |
222 |
caacttataacagttggactaattctcagagaatatagaatacttatcatgtaagtaaagtctgaccgatga |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32707226 |
caacttataacagttggactaattctcagagaatatagaatacttatcatgtaagtaaagtctgaccgatga |
32707155 |
T |
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