View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_145 (Length: 278)

Name: NF8294A_low_145
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_145
NF8294A_low_145
[»] chr5 (7 HSPs)
chr5 (10-225)||(38447081-38447296)
chr5 (10-187)||(38180615-38180792)
chr5 (10-187)||(38190339-38190516)
chr5 (10-187)||(38207839-38208016)
chr5 (10-187)||(38217564-38217741)
chr5 (10-187)||(38455975-38456152)
chr5 (65-187)||(26033464-26033586)
[»] chr1 (2 HSPs)
chr1 (10-223)||(38342378-38342593)
chr1 (10-223)||(38446571-38446786)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 38447081 - 38447296
Alignment:
Q  10 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38447081 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 38447180  T
Q  110 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaggtatggtggattcacatggtctaaaatcgctcgcgaggtatttttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||    
T  38447181 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaaaatcgctcgcgaggtatttttg 38447280  T
Q  210 ttcatgttttactttc 225  Q
    ||||||||||||||||    
T  38447281 ttcatgttttactttc 38447296  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 38180615 - 38180792
Alignment:
Q  10 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 109  Q
    |||||||||||||| ||||||||||||| ||  | || |||  ||  | ||| | |||||| ||| | |||||||||||| |||||  ||| | ||| ||    
T  38180615 gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa 38180714  T
Q  110 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaggtatggtggattcacatggtctaa 187  Q
    |||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  | |||||||| ||||| |||||||||    
T  38180715 aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa 38180792  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 38190516 - 38190339
Alignment:
Q  10 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 109  Q
    |||||||||||||| ||||||||||||| ||  | || |||  ||  | ||| | |||||| ||| | |||||||||||| |||||  ||| | ||| ||    
T  38190516 gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa 38190417  T
Q  110 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaggtatggtggattcacatggtctaa 187  Q
    |||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  | |||||||| ||||| |||||||||    
T  38190416 aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa 38190339  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 38207839 - 38208016
Alignment:
Q  10 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 109  Q
    |||||||||||||| ||||||||||||| ||  | || |||  ||  | ||| | |||||| ||| | |||||||||||| |||||  ||| | ||| ||    
T  38207839 gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa 38207938  T
Q  110 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaggtatggtggattcacatggtctaa 187  Q
    |||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  | |||||||| ||||| |||||||||    
T  38207939 aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa 38208016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 38217741 - 38217564
Alignment:
Q  10 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 109  Q
    |||||||||||||| ||||||||||||| ||  | || |||  ||  | ||| | |||||| ||| | |||||||||||| |||||  ||| | ||| ||    
T  38217741 gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa 38217642  T
Q  110 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaggtatggtggattcacatggtctaa 187  Q
    |||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  | |||||||| ||||| |||||||||    
T  38217641 aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa 38217564  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 38455975 - 38456152
Alignment:
Q  10 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 109  Q
    |||||||||||||| ||||||||||||| ||  | || |||  ||  | ||| | |||||| ||| | |||||||||||| |||||  ||| | ||| ||    
T  38455975 gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa 38456074  T
Q  110 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaggtatggtggattcacatggtctaa 187  Q
    |||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  | |||||||| ||||| |||||||||    
T  38456075 aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa 38456152  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 26033586 - 26033464
Alignment:
Q  65 aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagagg 164  Q
    |||||| ||| | |||||||||||| ||||   ||| | ||| |||||||||||||||||| ||||||||||||  ||||| |||  |||   ||| | |    
T  26033586 aagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaag 26033487  T
Q  165 tatggtggattcacatggtctaa 187  Q
    ||||||| ||||| |||||||||    
T  26033486 tatggtgaattcaaatggtctaa 26033464  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 38342378 - 38342593
Alignment:
Q  10 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 109  Q
    ||||| |||||||| | ||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||||||||||  ||| |||||| | |||     
T  38342378 gaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaag 38342477  T
Q  110 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaggtatggtggattcacatggtctaaaatcgctcgcgagg--tatttt 207  Q
    ||||||||||||||| |||||||||||| | ||| ||||| |||||  |   | || |||||  |||| ||||||||| || |||| |||||  ||||||    
T  38342478 aaagggtccatttagcaaagaagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttt 38342577  T
Q  208 tgttcatgttttactt 223  Q
    |||||||| |||||||    
T  38342578 tgttcatgctttactt 38342593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 38446571 - 38446786
Alignment:
Q  10 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 109  Q
    ||||| |||||||| | ||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||||||||||  ||| |||||| | |||     
T  38446571 gaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaag 38446670  T
Q  110 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaggtatggtggattcacatggtctaaaatcgctcgcgagg--tatttt 207  Q
    ||||||||||||||| |||||||||||| | ||| ||||| |||||  |   | || |||||  |||| ||||||||| || |||| |||||  ||||||    
T  38446671 aaagggtccatttagcaaagaagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttt 38446770  T
Q  208 tgttcatgttttactt 223  Q
    |||||||| |||||||    
T  38446771 tgttcatgctttactt 38446786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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