View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_147 (Length: 276)

Name: NF8294A_low_147
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_147
NF8294A_low_147
[»] chr5 (6 HSPs)
chr5 (10-264)||(33807962-33808214)
chr5 (10-264)||(33811616-33811868)
chr5 (10-264)||(33816534-33816786)
chr5 (94-189)||(16698504-16698601)
chr5 (94-189)||(22763905-22764002)
chr5 (11-63)||(16698618-16698670)
[»] chr6 (5 HSPs)
chr6 (11-264)||(31151926-31152180)
chr6 (11-208)||(22981504-22981710)
chr6 (94-208)||(23806787-23806904)
chr6 (87-232)||(1111378-1111524)
chr6 (11-76)||(23806698-23806761)
[»] chr3 (8 HSPs)
chr3 (30-264)||(50603148-50603384)
chr3 (11-261)||(54967210-54967477)
chr3 (11-261)||(44782524-44782791)
chr3 (94-261)||(39298736-39298908)
chr3 (92-208)||(18556392-18556511)
chr3 (23-261)||(54979854-54980109)
chr3 (163-252)||(31725346-31725433)
chr3 (90-189)||(17645800-17645897)
[»] chr1 (2 HSPs)
chr1 (11-226)||(29706854-29707069)
chr1 (94-186)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (29-261)||(26516-26752)
[»] chr8 (3 HSPs)
chr8 (11-261)||(41481548-41481815)
chr8 (11-261)||(36167547-36167813)
chr8 (16-257)||(18951129-18951383)
[»] chr7 (10 HSPs)
chr7 (10-208)||(4842647-4842857)
chr7 (11-261)||(25857131-25857395)
chr7 (11-261)||(4835575-4835840)
chr7 (92-261)||(13465046-13465223)
chr7 (94-189)||(27341025-27341120)
chr7 (85-206)||(17845847-17845969)
chr7 (94-261)||(24379370-24379545)
chr7 (102-264)||(8252686-8252846)
chr7 (11-61)||(24380113-24380163)
chr7 (94-160)||(38994151-38994218)
[»] chr4 (3 HSPs)
chr4 (10-261)||(9757211-9757480)
chr4 (92-189)||(37286972-37287069)
chr4 (94-206)||(42682924-42683038)
[»] scaffold0479 (1 HSPs)
scaffold0479 (11-261)||(2669-2936)
[»] chr2 (2 HSPs)
chr2 (96-189)||(37037942-37038035)
chr2 (29-63)||(37038074-37038108)
[»] scaffold0003 (1 HSPs)
scaffold0003 (10-261)||(342216-342482)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 33808214 - 33807962
Alignment:
Q  10 ctgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa 109  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  33808214 ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa 33808117  T
Q  110 accttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808116 accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 33808017  T
Q  210 ctaactatgtatctcaatttgtaggtacaactctcacaaattggctcactatatt 264  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33808016 ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatt 33807962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 33811868 - 33811616
Alignment:
Q  10 ctgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa 109  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  33811868 ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa 33811771  T
Q  110 accttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811770 accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 33811671  T
Q  210 ctaactatgtatctcaatttgtaggtacaactctcacaaattggctcactatatt 264  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33811670 ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatt 33811616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 33816786 - 33816534
Alignment:
Q  10 ctgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa 109  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  33816786 ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa 33816689  T
Q  110 accttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816688 accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 33816589  T
Q  210 ctaactatgtatctcaatttgtaggtacaactctcacaaattggctcactatatt 264  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33816588 ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatt 33816534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
Q  94 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 189  Q
    |||||||| ||||||| ||||||||||||||| || |||||||  | ||||||| |   ||||||||| | ||||||||||| |||||||||||||||    
T  16698601 aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa 16698504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 22763905 - 22764002
Alignment:
Q  94 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 189  Q
    ||||||||| ||||||||||||||||| |||| || |||||||||||||||||  |  |||||||||| | |   ||||||| |||||||||||||||    
T  22763905 aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaa 22764002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 16698670 - 16698618
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcact 63  Q
    |||||||||||   ||| |||||||| ||||||||||||||| ||||||||||    
T  16698670 tgttgggaaatatatgcataatttccatcctccgtgaactcagaataggcact 16698618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 31151926 - 31152180
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 110  Q
    ||||||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  31151926 tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaaa 31152025  T
Q  111 ccttctcaatgtgagtaaggaaaa-accacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 209  Q
    ||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31152026 ccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatggac 31152125  T
Q  210 ctaactatgtatctcaatttgtaggtacaactctcacaaattggctcactatatt 264  Q
    ||||||| |||||| ||||| ||| ||||||||||||||||||||| ||||||||    
T  31152126 ctaactacgtatctaaatttatagatacaactctcacaaattggcttactatatt 31152180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 22981710 - 22981504
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatga-------cacacaacaaaattttag 101  Q
    |||||||||||  |||| ||||||||| ||||||||||||||||| ||||||  ||||||||||||  ||||| |        |||| | | ||||||||    
T  22981710 tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgtgaaaaataagcgtaatgacac-agagaattttag 22981614  T
Q  102 cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc 198  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | |||||||    
T  22981613 cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc 22981514  T
Q  199 ctcaggtgga 208  Q
    || |||||||    
T  22981513 cttaggtgga 22981504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 23806787 - 23806904
Alignment:
Q  94 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a 190  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| |    
T  23806787 aattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaaca 23806886  T
Q  191 tcttcaccctcaggtgga 208  Q
     ||||||||| |||||||    
T  23806887 acttcacccttaggtgga 23806904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 87 - 232
Target Start/End: Original strand, 1111378 - 1111524
Alignment:
Q  87 acaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatct-ccactataataataatgggaat 185  Q
    ||||||||||||||| || ||||||||||| ||||| | |||||||||| || ||||| | |||| ||||||||||| | |  |||||||||||| ||||    
T  1111378 acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat 1111477  T
Q  186 acaaatcttcaccctcaggtggacctaactatgtatctcaatttgta 232  Q
    |||||  |||||||| | ||  |||||||||||||||||||||||||    
T  1111478 acaaactttcacccttacgtaaacctaactatgtatctcaatttgta 1111524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 23806698 - 23806761
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt 76  Q
    |||||||||||  |||| ||||||||| ||||||||||||||||| ||||||  ||||||||||||    
T  23806698 tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgt 23806761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 50603384 - 50603148
Alignment:
Q  30 aatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaag 129  Q
    |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50603384 aatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaaaccttctcaatgtgagtaag 50603285  T
Q  130 gaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacctaactatgtatctcaattt 229  Q
     ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||||||||||    
T  50603284 aaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggacctaactatatatctcaattt 50603185  T
Q  230 gtaggtacaactctc--acaaattggctcactatatt 264  Q
    |||| ||||||||||  ||||||||||||||||||||    
T  50603184 gtagatacaactctcatacaaattggctcactatatt 50603148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 54967210 - 54967477
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 99  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||  ||||||||||| ||||           |||||| || | ||||||    
T  54967210 tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcact--agcggaaacgtgaaataaaagcgtaatgacaca-aagagaatttt 54967306  T
Q  100 agcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atcttc 195  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||| |  |||||||  |||  ||||||||||| ||||||||||||||| | ||||    
T  54967307 agcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc 54967406  T
Q  196 accctcaggtggacctaac-----tatgtatctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
    ||||| ||||||| || ||     ||| | |||||||||||| | |  |||||||||||||||||||||||    
T  54967407 acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 54967477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 44782524 - 44782791
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 99  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  44782524 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 44782620  T
Q  100 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 195  Q
    ||||||||||||||||||||| |||| ||||  |||||||||||||||| |   ||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  44782621 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttc 44782720  T
Q  196 accctcaggtggacctaac-----tatgtatctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
    ||||| ||||||| || ||     ||| | |||||||||| | | |  |||||||||||||||||||||||    
T  44782721 acccttaggtggatctcactacaatatatctctcaatttgcaaggaacactctcacaaattggctcactat 44782791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 39298908 - 39298736
Alignment:
Q  94 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa-atc 192  Q
    |||||||| ||| ||||||||||||||||||  ||||||||| |||||||||| |  ||||||||||  ||||||||||| |||| |||||||||| | |    
T  39298908 aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac 39298809  T
Q  193 ttcaccctcaggtggacctaac-----tatgtatctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
    |||||||| ||||||| |||||     ||| | |||||||||||| | || |||||||||||||||||||||||    
T  39298808 ttcacccttaggtggatctaactacaatatatctctcaatttgtaaggac-actctcacaaattggctcactat 39298736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 18556392 - 18556511
Alignment:
Q  92 aaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 189  Q
    ||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||   |||||||||||  ||||||||||| | |||| ||||||||    
T  18556392 aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa 18556491  T
Q  190 -atcttcaccctcaggtgga 208  Q
     | ||||||||| |||||||    
T  18556492 caacttcacccttaggtgga 18556511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 54979854 - 54980109
Alignment:
Q  23 cctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattttagcgtggaaaac 111  Q
    ||||| ||||||||||||||||| ||||||||||| |||||  ||||||||||| ||||           |||||| || | ||||||||| ||||||||    
T  54979854 cctgcataatttccctcctccgtcaactcaaaataagcact--agcggaaacgtgaaataaaagtgtaatgacaca-aagagaattttagcatggaaaac 54979950  T
Q  112 cttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atcttcaccctcaggtgg 207  Q
    ||||||||| |||| || |||||||||||||||||| |  |||||||  |||  ||||||||||| ||||||||||||||| | ||||||||| ||||||    
T  54979951 cttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgg 54980050  T
Q  208 acctaac-----tatgtatctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
    | || ||     ||| | |||||||||||| | |  |||||||||||||||||| ||||    
T  54980051 atctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcgctat 54980109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 31725346 - 31725433
Alignment:
Q  163 tccactataataataatgggaatacaaatcttcaccctcaggtggacctaactatgtatctcaatttgtaggtacaactctcacaaattg 252  Q
    |||| ||||| ||||||| |||||||||||||||| || |||||||||| || ||||||||||||||||||  |||| ||||||||||||    
T  31725346 tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtag--acaattctcacaaattg 31725433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 17645897 - 17645800
Alignment:
Q  90 acaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 189  Q
    ||||||||||||||||||||||||||||||| | |  ||  |||||||||||||| | | ||| |||||||  ||||||||||| ||||||  |||||||    
T  17645897 acaaaattttagcgtggaaaaccttctcaatataa--aaaaaaaaaccacgggactcttgagcgtcttaaacttccactataatgataatgacaatacaa 17645800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 29706854 - 29707069
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 110  Q
    |||||| |||| ||| | ||||||| ||| |||||||||| |||||| ||||||||||  ||| ||||||||||||||||||||||||||| | ||||||    
T  29706854 tgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaaa 29706953  T
Q  111 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 210  Q
    |||||||||| ||||||||||| || |||||||| | ||  |||||||||||||||||||||||||||||| |  | |||||||||||||| ||||||||    
T  29706954 ccttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggacc 29707053  T
Q  211 taactatgtatctcaa 226  Q
    ||||||||||||||||    
T  29707054 taactatgtatctcaa 29707069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
Q  94 aattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaata 186  Q
    |||||| ||||| ||||||||||||||||||| |||| ||||| ||||||  ||    | ||||||||  ||||||||||||||||||||||||    
T  27642225 aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata 27642132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 26516 - 26752
Alignment:
Q  29 taatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaa 128  Q
    |||| |||||||| |||||||||||||||| |||||||||| ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||    
T  26516 taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagtaa 26613  T
Q  129 ggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaat-cttcaccctcaggtggacctaacta-----tgtatc 222  Q
    |||||||| ||||||||| |  ||||||||||  |||||| |||| |||| | |||||||| | || |||||| ||||||| || ||||     | | ||    
T  26614 ggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaactactccacccttaggtggatctcactacaatttatctc 26713  T
Q  223 tcaatttgtaggtacaactctcacaaattggctcactat 261  Q
    |||||||||| | |  |||||||||||||||||||||||    
T  26714 tcaatttgtaaggaacactctcacaaattggctcactat 26752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 41481815 - 41481548
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 99  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  41481815 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 41481719  T
Q  100 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 195  Q
    ||||||||||||||||||||| |||| ||||  |||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  41481718 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 41481619  T
Q  196 accctcaggtggacctaac-----tatgtatctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
    ||||| ||||||| || ||     ||| | |||||||||||| | |  |||||||||||||||||||||||    
T  41481618 acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 41481548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 36167813 - 36167547
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 99  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||  ||||||||||| ||||           |||||| || | ||||||    
T  36167813 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 36167717  T
Q  100 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 195  Q
    ||||||||||||||||||||| |||| ||||  ||||||||| |||||| |  |||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  36167716 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 36167618  T
Q  196 accctcaggtggacctaac-----tatgtatctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
    ||||| ||||||| || ||     ||| | |||||||||||| | |  |||||||||||||||||||||||    
T  36167617 acccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat 36167547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 18951129 - 18951383
Alignment:
Q  16 ggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat------gacacacaacaaaattttagcgtggaaa 109  Q
    |||||| ||||| |||||| ||||||||||||||||||||||||||||  ||||||||| | ||||      |  |    ||| ||||||||| ||||||    
T  18951129 ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcact--agcggaaacatgaaatataagcgtaatgacacagaattttagcatggaaa 18951226  T
Q  110 accttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcaccctcaggt 205  Q
    |||||||||||||||| ||||  |||||||||| ||||  |  || ||||||| | ||||||||||| ||||||||||||||| | ||||||||| ||||    
T  18951227 accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggt 18951326  T
Q  206 ggacctaacta-----tgtatctcaatttgtaggtacaactctcacaaattggctca 257  Q
     || || ||||     | | |||||||||||| | |  |||||||||||||||||||    
T  18951327 tgatctcactataatttatctctcaatttgtaaggaacactctcacaaattggctca 18951383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 4842647 - 4842857
Alignment:
Q  10 ctgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt 98  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||  ||||||||||| ||||           |||||| || | |||||    
T  4842647 ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagtgtaatgacaca-aagagaattt 4842743  T
Q  99 tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atctt 194  Q
    ||||||||||||||||||||||||||| ||||  ||||||||| |||||| |  |||||||||| | ||||||||||| ||||| ||||||||| | |||    
T  4842744 tagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaactt 4842843  T
Q  195 caccctcaggtgga 208  Q
    |||||| |||||||    
T  4842844 cacccttaggtgga 4842857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 25857131 - 25857395
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 99  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||  ||||||||||| ||||           |||||| |    ||||||    
T  25857131 tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aatttt 25857225  T
Q  100 agcgtggaaaaccttctcaatgtgag-taaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttca 196  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | |||||    
T  25857226 agcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttca 25857325  T
Q  197 ccctcaggtggacctaact---atgtatctc--aatttgtaggtacaactctcacaaattggctcactat 261  Q
    || | ||||||| || |||   || ||||||  |||||||| | |  |||||||||||||||||||||||    
T  25857326 cctttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactat 25857395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 4835575 - 4835840
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttagc 102  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||||||||  || |||||||| ||||  | ||      ||| | | |||||||||    
T  4835575 tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc 4835672  T
Q  103 gtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc 198  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||| ||| | |||||||    
T  4835673 gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc 4835772  T
Q  199 ctcaggtggacctaac-----tatgtatctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
    || ||||||| || ||     ||| | |||||||||||| | |  |||||||||||||||||||||||    
T  4835773 cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 4835840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 261
Target Start/End: Original strand, 13465046 - 13465223
Alignment:
Q  92 aaaattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 189  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  13465046 aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa 13465145  T
Q  190 -atcttcaccctcaggtggacctaact---atgta--tctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
     |  |||||||||||||||| || |||   |||||  |||||||||||| | |  ||||| ||||||||| |||||||    
T  13465146 caagttcaccctcaggtggatctcactacaatgtatctctcaatttgtaaggaacactcttacaaattggttcactat 13465223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
Q  94 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 189  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||| |   |||||||||  || |||| ||| ||||||| |||||||    
T  27341025 aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa 27341120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 17845969 - 17845847
Alignment:
Q  85 acacaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaa 184  Q
    |||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||| |||||  |   |||||||||  ||||||||||| ||||||| ||    
T  17845969 acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa 17845870  T
Q  185 tacaa-atcttcaccctcaggtg 206  Q
    ||||| | ||||||||| |||||    
T  17845869 tacaacaacttcacccttaggtg 17845847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 24379370 - 24379545
Alignment:
Q  94 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a 190  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||||||| |  |  |||||||||| | ||||||||||| ||||| ||||||||| |    
T  24379370 aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaaca 24379469  T
Q  191 tcttcaccctcaggtgga----ccta-actatgtatctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
     ||||||||| |||||||    |||| | ||| | |||||||||||| | |  ||||||| |||||||||||||||    
T  24379470 acttcacccttaggtggatctccctacaatatatctctcaatttgtaaggaacactctcataaattggctcactat 24379545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 264
Target Start/End: Original strand, 8252686 - 8252846
Alignment:
Q  102 cgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctc 201  Q
    |||||||||||||||||| |||||||||| |      |||||| |||||| ||||||| ||  || | ||||||||| ||||||||||| ||||| | |     
T  8252686 cgtggaaaaccttctcaacgtgagtaaggta------cgggactcgtaagtctcttaactcctcaatgtaataataacgggaatacaaagcttcatcttt 8252779  T
Q  202 aggtggacctaacta----tgtatctcaatttgtaggtacaactctcacaaattggctcactatatt 264  Q
    || ||||| ||| ||    ||||||||||||||||| ||||||| ||| |||||| |||||||||||    
T  8252780 agatggacttaattaattatgtatctcaatttgtagatacaactatcataaattgactcactatatt 8252846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggca 61  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  24380163 tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca 24380113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 38994151 - 38994218
Alignment:
Q  94 aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaa 160  Q
    ||||||| |||||||||||||||||||| ||| || ||||||||||||||||||   |||||||||||    
T  38994151 aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaa 38994218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 9757211 - 9757480
Alignment:
Q  10 ctgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt 98  Q
    ||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||  ||||||||||| ||||           |||||| || | |||||    
T  9757211 ctgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaattt 9757307  T
Q  99 tagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatc---tccactataataataatgggaatacaa-atct 193  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||| |  ||||||||||     ||||||||||| ||||||||||||||| | ||    
T  9757308 tagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaact 9757407  T
Q  194 tcaccctcaggtggacctaac-----tatgtatctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
    ||||||| ||||||| || ||     ||| | |||||||||||| | |  |||||||||||||||||||||||    
T  9757408 tcacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat 9757480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
Q  92 aaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 189  Q
    ||||||||||| |||||||||||||||||||||  ||||||||| |||||||||| ||||| |||||||  |||||||||||||||||  ||||||||    
T  37286972 aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa 37287069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 42682924 - 42683038
Alignment:
Q  94 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-at 191  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||||||||| |   ||||||||| | ||||||||||| ||||||||||||||| |     
T  42682924 aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaa 42683023  T
Q  192 cttcaccctcaggtg 206  Q
    ||||||||| |||||    
T  42683024 cttcacccttaggtg 42683038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 2936 - 2669
Alignment:
Q  11 tgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 99  Q
    ||||||||||| | ||| |||||||||| ||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  2936 tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt 2840  T
Q  100 agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 195  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  2839 agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 2740  T
Q  196 accctcaggtggacctaac-----tatgtatctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
    ||||| ||||||| || ||     ||| | |||||||||||| | |   ||||||||||||||||||||||    
T  2739 acccttaggtggatctcactacaatatatctctcaatttgtaaggaacgctctcacaaattggctcactat 2669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
Q  96 ttttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 189  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||||||| |  ||||||||||  | ||||||||  |||||| ||||||||    
T  37038035 ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa 37037942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 37038108 - 37038074
Alignment:
Q  29 taatttccctcctccgtgaactcaaaataggcact 63  Q
    ||||||| |||||||||||||||||||||||||||    
T  37038108 taatttctctcctccgtgaactcaaaataggcact 37038074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 342216 - 342482
Alignment:
Q  10 ctgttgggaaattcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgaca---------cacaacaaaatttta 100  Q
    ||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||  ||| ||||||| ||||   |         ||||| | |||||||    
T  342216 ctgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcact--agcagaaacgtgaaatataagcgtaatgacacaa-agaatttta 342312  T
Q  101 gcgtggaaaaccttctcaatgtgagtaa-ggaa-aaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttca 196  Q
    ||||| |||||||||||||| |||| || |||| ||||||||||| || |  |||||||||| | ||||||||||| ||||||||||||||| |  ||||    
T  342313 gcgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaacaatttca 342412  T
Q  197 ccctcaggtggacctaac-----tatgtatctcaatttgtaggtacaactctcacaaattggctcactat 261  Q
    |||| ||||| | || ||     ||| | |||||||||||| | |  |||||||||||||||||||||||    
T  342413 cccttaggtgtatctgactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 342482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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