View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_149 (Length: 273)

Name: NF8294A_low_149
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_149
NF8294A_low_149
[»] chr8 (3 HSPs)
chr8 (8-273)||(6483508-6483773)
chr8 (25-66)||(44047543-44047584)
chr8 (25-66)||(45041327-45041368)
[»] chr7 (4 HSPs)
chr7 (25-66)||(20158682-20158723)
chr7 (25-73)||(9210707-9210756)
chr7 (25-66)||(31681031-31681072)
chr7 (25-66)||(40630664-40630705)
[»] chr1 (9 HSPs)
chr1 (25-66)||(7133313-7133354)
chr1 (8-66)||(39525978-39526036)
chr1 (25-66)||(696500-696541)
chr1 (25-66)||(4318856-4318897)
chr1 (25-62)||(9599409-9599446)
chr1 (25-66)||(37311766-37311807)
chr1 (25-66)||(41165512-41165553)
chr1 (25-65)||(32082768-32082808)
chr1 (25-73)||(32404530-32404578)
[»] chr2 (5 HSPs)
chr2 (25-72)||(3720420-3720467)
chr2 (8-66)||(8197552-8197610)
chr2 (8-66)||(8202312-8202370)
chr2 (25-66)||(3481384-3481425)
chr2 (25-66)||(18959141-18959182)
[»] chr5 (3 HSPs)
chr5 (24-66)||(15588401-15588443)
chr5 (25-66)||(5860064-5860105)
chr5 (26-62)||(38830550-38830586)
[»] chr4 (6 HSPs)
chr4 (8-66)||(45209216-45209274)
chr4 (25-66)||(15665331-15665372)
chr4 (13-66)||(22420728-22420781)
chr4 (25-66)||(23906308-23906349)
chr4 (33-66)||(29399042-29399075)
chr4 (25-73)||(51811283-51811330)
[»] chr3 (4 HSPs)
chr3 (25-66)||(19676092-19676133)
chr3 (25-66)||(49503579-49503620)
chr3 (25-76)||(41529991-41530043)
chr3 (26-66)||(48734158-48734198)
[»] chr6 (1 HSPs)
chr6 (23-74)||(21089625-21089677)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 6483508 - 6483773
Alignment:
Q  8 agaatattatcgcgatgtttgatcaatgtagctgaccctacttagtgggaaaaggcttgttgttgtaatttgctataggtacattgatagtaatcaaatt 107  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6483508 agaatattatcgcgttgtttgatccatgtagctgaccctacttagtgggaaaaggcttgttgttgtaatttgctataggtacattgatagtgatcaaatt 6483607  T
Q  108 aagaatttgtgtttttaacttctaaacaatctatctgtgcgagcaatagtataacattagaggtgatgtgggagaaaatcaccttttggtgaatggtaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6483608 aagaatttgtgtttttaacttctaaacaatctatctgtgcgagcaatagtataacattagaggtgatgtgggagaaaatcaccttttggtgaatggtaat 6483707  T
Q  208 attgcgtaggaacctaatgatattatgctattgttgctaccttgtgttctttattttttattttga 273  Q
    |||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6483708 attgtgcaggaacctaatgatattatgctattgttgctactttgtgttctttattttttattttga 6483773  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 44047584 - 44047543
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||    
T  44047584 tttgatccatgtagctgaccccacttagtgggataaggcttg 44047543  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 45041368 - 45041327
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||    
T  45041368 tttgatccatgtagctgaccccacttagtgggataaggcttg 45041327  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 20158723 - 20158682
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  20158723 tttgatccatgtagctgaccctacttagtgggataaggcttg 20158682  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 9210756 - 9210707
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggctt-gttgttgt 73  Q
    ||||||| ||||||||||||| ||||||||||| ||||||| ||||||||    
T  9210756 tttgatccatgtagctgaccccacttagtgggataaggcttcgttgttgt 9210707  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 31681072 - 31681031
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||    
T  31681072 tttgatccatgtagccgaccccacttagtgggaaaaggcttg 31681031  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 40630664 - 40630705
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||    
T  40630664 tttgatccatgtagccgaccccacttagtgggaaaaggcttg 40630705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 7133354 - 7133313
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||||||||| ||||||||||||||||||||    
T  7133354 tttgatccatgtagctgaccccacttagtgggaaaaggcttg 7133313  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 39525978 - 39526036
Alignment:
Q  8 agaatattatcgcgatgtttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    |||||||||| |||  |||||||| ||||||||||||||| |||||||||  |||||||    
T  39525978 agaatattatggcgtcgtttgatccatgtagctgaccctatttagtgggaccaggcttg 39526036  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 696500 - 696541
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||    
T  696500 tttgatcaatgtagccgaccccacttagtgggataaggcttg 696541  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 4318897 - 4318856
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||    
T  4318897 tttgatccatgtagccgaccccacttagtgggaaaaggcttg 4318856  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 9599446 - 9599409
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaagg 62  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  9599446 tttgatccatgtagctgaccttacttagtgggaaaagg 9599409  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 37311807 - 37311766
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||    
T  37311807 tttgatccatgtagccgaccccacttagtgggaaaaggcttg 37311766  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 41165512 - 41165553
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||    
T  41165512 tttgatccatgtagccgaccccacttagtgggaaaaggcttg 41165553  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 32082808 - 32082768
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggctt 65  Q
    ||||||| ||||||| ||||| |||||||||||||||||||    
T  32082808 tttgatccatgtagccgaccccacttagtgggaaaaggctt 32082768  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 32404578 - 32404530
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttgttgttgt 73  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| ||||||||    
T  32404578 tttgatccatgtagccgaccccacttagtgggataaggctggttgttgt 32404530  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 3720467 - 3720420
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttgttgttg 72  Q
    ||||||| ||||||| ||||| ||||||||||| ||||||||||||||    
T  3720467 tttgatccatgtagccgaccccacttagtgggagaaggcttgttgttg 3720420  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 8197610 - 8197552
Alignment:
Q  8 agaatattatcgcgatgtttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    |||||||||| |||  |||||||| ||||||| ||||||||||||||||| || |||||    
T  8197610 agaatattatggcgtcgtttgatccatgtagccgaccctacttagtgggataatgcttg 8197552  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 8202370 - 8202312
Alignment:
Q  8 agaatattatcgcgatgtttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    |||||||||| |||  |||||||| ||||||| ||||||||||||||||| || |||||    
T  8202370 agaatattatggcgtcgtttgatccatgtagccgaccctacttagtgggataatgcttg 8202312  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 3481384 - 3481425
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||    
T  3481384 tttgatccatgtagctgaccccacttagttggaaaaggcttg 3481425  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 18959141 - 18959182
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||    
T  18959141 tttgatccatgtagctgaccccacttagtgggataaggcttg 18959182  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 15588443 - 15588401
Alignment:
Q  24 gtttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||    
T  15588443 gtttgatctatgtagccgaccctacttagtgggataaggcttg 15588401  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 5860064 - 5860105
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||    
T  5860064 tttgatctatgtagccgaccctacttagtgggataaggcttg 5860105  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 38830550 - 38830586
Alignment:
Q  26 ttgatcaatgtagctgaccctacttagtgggaaaagg 62  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  38830550 ttgatccatgtagctgaccccacttagtgggaaaagg 38830586  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 45209274 - 45209216
Alignment:
Q  8 agaatattatcgcgatgtttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    |||||||||| |||  |||||||| ||||||| ||||| ||||||||||| ||||||||    
T  45209274 agaatattatggcgtagtttgatccatgtagccgaccccacttagtgggataaggcttg 45209216  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 15665331 - 15665372
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||    
T  15665331 tttgatccatgtagctgaccccacttagtgggataaggcttg 15665372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 22420781 - 22420728
Alignment:
Q  13 attatcgcgatgtttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||| ||| ||||||||| |||||| |||||| ||||||||||| ||||||||    
T  22420781 attatggcgttgtttgatctatgtagttgaccccacttagtgggataaggcttg 22420728  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 23906349 - 23906308
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||    
T  23906349 tttgatccatgtagctgaccccacttagtgggataaggcttg 23906308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 29399042 - 29399075
Alignment:
Q  33 atgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||||||||| ||||||||||||||||||||    
T  29399042 atgtagctgaccccacttagtgggaaaaggcttg 29399075  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 51811330 - 51811283
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttgttgttgt 73  Q
    ||||||| ||||||| ||||| ||||||||||| |||||||||||||||    
T  51811330 tttgatccatgtagccgaccc-acttagtgggataaggcttgttgttgt 51811283  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 19676133 - 19676092
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||    
T  19676133 tttgatccatgtagctgaccccacttagtgggataaggcttg 19676092  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 49503620 - 49503579
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||    
T  49503620 tttgatccatgtagccgaccctacttagtgggataaggcttg 49503579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 41529991 - 41530043
Alignment:
Q  25 tttgatcaatgtagctgaccctacttagtgggaaaaggctt-gttgttgtaat 76  Q
    ||||||| ||||||| ||||| ||||||||||| ||||||| |||||||||||    
T  41529991 tttgatccatgtagccgaccccacttagtgggataaggcttggttgttgtaat 41530043  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 48734198 - 48734158
Alignment:
Q  26 ttgatcaatgtagctgaccctacttagtgggaaaaggcttg 66  Q
    |||||| ||||||||||||| ||||||||||| ||||||||    
T  48734198 ttgatccatgtagctgaccccacttagtgggataaggcttg 48734158  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 21089625 - 21089677
Alignment:
Q  23 tgtttgatcaatgtagctgaccctacttagtgggaaaaggctt-gttgttgta 74  Q
    ||||||||| ||||||||| ||| ||||||||||| ||||||| |||||||||    
T  21089625 tgtttgatccatgtagctgcccccacttagtgggataaggcttggttgttgta 21089677  T

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