View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_151 (Length: 272)
Name: NF8294A_low_151
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_151 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 264
Target Start/End: Complemental strand, 5690143 - 5689881
Alignment:
| Q |
2 |
ctgataagaaaggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgagga |
101 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5690143 |
ctgaaaagaaaggtgatagatatgaagcaatctacagtttccattttggtgattatggtcacttagcagttcaaggaccatatttaacctatcctgagga |
5690044 |
T |
|
| Q |
102 |
cacttatctagctgtgactggtggttctggattatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctataca |
201 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5690043 |
cacttatctagctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctataca |
5689944 |
T |
|
| Q |
202 |
ttttatttgagaggtattaaggatttgccacaagagcttcttggtaagcatgttgagccttct |
264 |
Q |
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| T |
5689943 |
ttttatttgagaggtattaaggatttgccacaagagcttcttggtaaacatgttgagccttct |
5689881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 25914813 - 25914568
Alignment:
| Q |
13 |
ggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctag |
112 |
Q |
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| T |
25914813 |
ggtgacagatatgaagcaatctacagttttcacgttggagactatggtcaaatagctgtgcaaggaccttacctaacctat---gaggacacatatctaa |
25914717 |
T |
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| Q |
113 |
ctgtgactggtggttctggattatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgag |
212 |
Q |
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| T |
25914716 |
ctgtgactggtggtactggaatttttgaaggtgttacaggccaagtgaagctcaatcaaattgtttttccatttaagattttctacacattttatttgaa |
25914617 |
T |
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| Q |
213 |
aggtattaaggatttgccacaagagcttcttggtaagcatgttgagcct |
261 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
25914616 |
gggtattaaggatttgccacaagagcttcttggtaaaccagttgagcct |
25914568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 6792563 - 6792803
Alignment:
| Q |
21 |
atatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgact |
120 |
Q |
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| T |
6792563 |
atatgaagcaatatatagtttttattttggagagtatggtcatatttctgtgcaaggttcttatttaacttatgaggaggatacttatttggctgtgact |
6792662 |
T |
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| Q |
121 |
ggtggttctggattatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtatta |
220 |
Q |
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| T |
6792663 |
ggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacattttatcttaagggtatta |
6792762 |
T |
|
| Q |
221 |
aggatttgccacaagagcttcttggtaagcatgttgagcct |
261 |
Q |
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||||||||||||| ||| |||||| ||| | | |||||||| |
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| T |
6792763 |
aggatttgccacatgagtttcttgttaatcctattgagcct |
6792803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 6800131 - 6800246
Alignment:
| Q |
118 |
actggtggttctggattatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggta |
217 |
Q |
| |
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|||||||| ||||| |||||||||||||| | |||||||| ||| | ||||||||||| |||||||| ||| | || || ||||||||| | | |||| |
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| T |
6800131 |
actggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagctattttacacattttatcttatgggta |
6800230 |
T |
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| Q |
218 |
ttaaggatttgccaca |
233 |
Q |
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|||||||||||||||| |
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| T |
6800231 |
ttaaggatttgccaca |
6800246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 22227359 - 22227490
Alignment:
| Q |
13 |
ggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctag |
112 |
Q |
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|||||||||||||||||||| ||||| ||| | |||||||| |||||||| || |||| |||||||| ||| | || || | | ||||| ||||| | |
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| T |
22227359 |
ggtgatagatatgaagcaatttacagcttctactttggagactatggtcatatatcagtacaaggaccttatctcacatacc---aagacacatatcttg |
22227455 |
T |
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| Q |
113 |
ctgtgactggtggttctggattatttgaaggtgtt |
147 |
Q |
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|| | || |||||||||||| | |||||||||||| |
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| T |
22227456 |
ctataacaggtggttctggaatctttgaaggtgtt |
22227490 |
T |
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