View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_155 (Length: 269)
Name: NF8294A_low_155
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_155 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 37902822 - 37902572
Alignment:
| Q |
19 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
118 |
Q |
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| T |
37902822 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
37902723 |
T |
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| Q |
119 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
218 |
Q |
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| T |
37902722 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
37902623 |
T |
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| Q |
219 |
aaaatgagatctttgttttgtgttgtatgcaggtttacttgggtgagcaat |
269 |
Q |
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| T |
37902622 |
aaaatgagatctttgttttgtgttgtatgcaggtttacttgggtgagcaat |
37902572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 37909333 - 37909083
Alignment:
| Q |
19 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909333 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
37909234 |
T |
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| Q |
119 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909233 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
37909134 |
T |
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| Q |
219 |
aaaatgagatctttgttttgtgttgtatgcaggtttacttgggtgagcaat |
269 |
Q |
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| T |
37909133 |
aaaatgagatctttgttttgtgttgtatgcaggtttacttgggtgagcaat |
37909083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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