View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_156 (Length: 269)

Name: NF8294A_low_156
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_156
NF8294A_low_156
[»] chr8 (13 HSPs)
chr8 (1-250)||(3398564-3398813)
chr8 (4-260)||(3391583-3391839)
chr8 (4-244)||(3364083-3364323)
chr8 (4-260)||(3407370-3407626)
chr8 (4-260)||(31175745-31176001)
chr8 (4-248)||(3314768-3315012)
chr8 (4-244)||(3286562-3286802)
chr8 (13-247)||(3262682-3262916)
chr8 (103-233)||(3375003-3375133)
chr8 (4-242)||(3325047-3325285)
chr8 (103-245)||(7164798-7164941)
chr8 (82-260)||(13808603-13808781)
chr8 (4-251)||(3267245-3267492)
[»] chr5 (5 HSPs)
chr5 (4-260)||(20838530-20838786)
chr5 (4-260)||(20812175-20812431)
chr5 (4-251)||(15802818-15803065)
chr5 (7-251)||(30417727-30417971)
chr5 (84-251)||(12599179-12599346)
[»] chr3 (2 HSPs)
chr3 (4-251)||(6905853-6906100)
chr3 (4-251)||(32411130-32411374)
[»] scaffold0468 (1 HSPs)
scaffold0468 (4-260)||(6193-6449)
[»] chr2 (1 HSPs)
chr2 (3-260)||(14766993-14767250)
[»] chr7 (2 HSPs)
chr7 (105-260)||(8371807-8371962)
chr7 (133-179)||(36213885-36213931)
[»] chr6 (8 HSPs)
chr6 (144-181)||(5447564-5447601)
chr6 (133-179)||(5344840-5344886)
chr6 (147-181)||(5383303-5383337)
chr6 (112-181)||(5096685-5096754)
chr6 (129-178)||(5396930-5396979)
chr6 (144-181)||(5447134-5447171)
chr6 (133-181)||(5128473-5128521)
chr6 (93-181)||(5425887-5425975)
[»] chr4 (1 HSPs)
chr4 (134-181)||(4133480-4133527)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 3398564 - 3398813
Alignment:
Q  1 gacgataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaatta 100  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  3398564 gacgataatcctttatatccacatagagatatatatgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacaccagtatttgctgcaatta 3398663  T
Q  101 gagttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagat 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||| |||| ||||||||    
T  3398664 gagttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttgaacaaccagaaataatgagagttttcactgatttcaattgatagat 3398763  T
Q  201 ctctcttgggagattggcaagacttgtacagtccctcaaatttatcagaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3398764 ctctcttgggagattggcaagacttgtacagtccctcaaatttatcagaa 3398813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 3391583 - 3391839
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| || |||||||| ||   ||||||||| || |||||| |||| |||||||    
T  3391583 gataatccttcatatccacatagagatatatatccaatgctttttgatctcactatcgaaaatggtggttgtttgactccagtatttgctgccattagag 3391682  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| || ||||||| ||||| | |||| |||||||||||    
T  3391683 ttgtcaaggattccatttgcactatatcttcttccaatttgtcaatctttgaacaaccagaaaggatgagagtttccactgttctcaattgatagatctc 3391782  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaaggatattctt 260  Q
    |||||||||||||  |||||| ||||||||| ||||||||| |||||| | ||||||    
T  3391783 tcttgggagattgctaagactcgtacagtccttcaaatttaacagaagaagattctt 3391839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 3364323 - 3364083
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| || |||||||| ||   ||||||||| || |||||| |||| |||||||    
T  3364323 gataatccttcatatccacatagagatatatatccaatgctttttgatctcactatcgaaaatggtggttgtttgactccagtatttgctgccattagag 3364224  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| || ||||||| ||||  | |||| |||||||||||    
T  3364223 ttgtcaaggattccatttgcactatatcttcttccaatttgtcaatctttgaacaaccagaaaggatgagagtttccactcttctcaattgatagatctc 3364124  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaattta 244  Q
    ||||||||||||| ||||||| ||||||||| |||||||||    
T  3364123 tcttgggagattgccaagactcgtacagtccttcaaattta 3364083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 3407370 - 3407626
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    |||||||||| ||||||||||||||||||||  |  ||| | ||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||    
T  3407370 gataatccttgatatccacatagagatatatgggtgatgttctttgatctaacaatcgaaaaaggcacttgtttgacaccagcattttctgcaattagag 3407469  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
    |||||||||||| |||||||| ||||||||||||||||| | |||||||| ||||||||||||| || ||||||||||||||| ||||  ||||||||||    
T  3407470 ttgtcaaggatttcatttgcactatatcttcttccaatttgacaatctttgaacaaccagaaaggatgagagttttcactgatctcaatcgatagatctc 3407569  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaaggatattctt 260  Q
    ||||||||||||  ||||||||| ||| ||| |||||||||| ||||| | ||||||    
T  3407570 tcttgggagattaacaagacttgcacaatccttcaaatttatgagaagaagattctt 3407626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 260
Target Start/End: Complemental strand, 31176001 - 31175745
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||  | || ||| | || ||||||||||  || |||||| ||||||||| ||    
T  31176001 gataatccttcatatccacatagagatatatatgcaatgctttttgatcttgctattgaatagggcacttgtttgataccagtatttgctgcaattaaag 31175902  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| ||| ||||||||||| |||  | ||||| |||    
T  31175901 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatcattgaacaaccagaaagaatgagacttttcactgatctcactttatagacctc 31175802  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaaggatattctt 260  Q
    | ||||||||||| ||||||||||||||||| | |||||||||| ||| | ||||||    
T  31175801 ttttgggagattgccaagacttgtacagtccttaaaatttatcaaaagaagattctt 31175745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 248
Target Start/End: Complemental strand, 3315012 - 3314768
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    ||||| ||||||||| ||||||| ||||||||  ||||| |||||||| |||||||||||||||||||||||||||| || || ||| |||||||||| |    
T  3315012 gataaaccttcatattcacatagggatatatatccaatgttttttgatttaacaatcgaaaaaggaacttgtttgacaccagtttttgctgcaattaggg 3314913  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
    ||||||| |||| |||||||| |||||||||||||||||  ||||||||| |||||||||||||||| | ||||||||| ||| |||| |||||||||||    
T  3314912 ttgtcaatgatttcatttgcactatatcttcttccaatttttcaatctttgaacaaccagaaagaatgaaagttttcaccgatgtcaattgatagatctc 3314813  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatttatcag 248  Q
    ||||||||||||   |||||||||||||||| | |||||||||||    
T  3314812 tcttgggagatttctaagacttgtacagtccttgaaatttatcag 3314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 3286562 - 3286802
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    ||||||||||||||||||||||| ||||||||    |||||||||||||| ||||| ||||| || |||| ||| ||  ||||||| | |||||| || |    
T  3286562 gataatccttcatatccacatagggatatatatctgatgctttttgatcttacaattgaaaagggcacttctttaacagctgtattatttgcaatcagtg 3286661  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagat-ct 202  Q
    |||||||||||||||| |||| ||| ||||||||||| | |||||||||| ||||||||||||| || ||||| ||||  ||| |||  |||||||| ||    
T  3286662 ttgtcaaggattccatctgcactatgtcttcttccaacttgtcaatctttgaacaaccagaaaggatgagagtgttcaaagatttcagttgatagatact 3286761  T
Q  203 ctcttgggagattggcaagacttgtacagtccctcaaattta 244  Q
    || |||||||||||  ||||| | |||||||| |||||||||    
T  3286762 ct-ttgggagattgctaagacctatacagtccttcaaattta 3286802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 3262682 - 3262916
Alignment:
Q  13 tcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagagttgtcaagg 112  Q
    |||||||||||||| ||||||||  |||||||||||||||| || || ||| | || || | ||| || |||||||  | |||||| || ||||||||||    
T  3262682 tcatatccacatagggatatatatccaatgctttttgatcttactattgaatagggcacctctttcacacctgtatcctttgcaatcagtgttgtcaagg 3262781  T
Q  113 attccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctctcttgggag 212  Q
    ||||||| |||| ||| ||||||||||||| |||||||||| | ||||||||||| || ||||||||||  ||| |||| || || || |   |||||||    
T  3262782 attccatctgcactatgtcttcttccaatttgtcaatctttgagcaaccagaaagtatgagagttttcaaagatttcaattggtatatattctttgggag 3262881  T
Q  213 attggcaagacttgtacagtccctcaaatttatca 247  Q
    |||   ||||||| |||||||| ||||||||||||    
T  3262882 attttgaagacttctacagtccttcaaatttatca 3262916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 103 - 233
Target Start/End: Complemental strand, 3375133 - 3375003
Alignment:
Q  103 gttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatct 202  Q
    ||||||||||||||||| |||| ||| ||||||||||| | || ||||||| ||||||||||||| |||||||||||||    | ||||||||||||||     
T  3375133 gttgtcaaggattccatctgcattatgtcttcttccaacttgttaatctttgaacaaccagaaagtataagagttttcaaaagtttcaaatgatagatca 3375034  T
Q  203 ctcttgggagattggcaagacttgtacagtc 233  Q
    | ||||||||||||| |||||||||||||||    
T  3375033 cccttgggagattggtaagacttgtacagtc 3375003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 3325047 - 3325285
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    |||| ||||||||||||||| || ||||||||  ||||||||||| |||| |  || ||| ||||||||||||| ||   ||||| ||  ||||| || |    
T  3325047 gatagtccttcatatccacagagggatatatatccaatgctttttaatcttagtattgaataaggaacttgttttacagatgtatctttagcaatcagcg 3325146  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
    |||||||||||||||| |||   | | |||||||||| | |||||||||| |||||||||| |  |||||||||| ||  ||| |||| |||||||||||    
T  3325147 ttgtcaaggattccatctgcccgaaaccttcttccaacttgtcaatctttgaacaaccagataatataagagtttccaaagatttcaattgatagatctc 3325246  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatt 242  Q
     | |||||||||   |||||||| ||||||| |||||||    
T  3325247 ccctgggagatttctaagacttgcacagtccttcaaatt 3325285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 103 - 245
Target Start/End: Original strand, 7164798 - 7164941
Alignment:
Q  103 gttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaa-atgatagatc 201  Q
    ||||||||||||| ||| |||| ||| ||||||||||| | | |||||||| ||||||||||||| || |||||||||| |||| ||||  ||||||||     
T  7164798 gttgtcaaggatttcatctgcattatgtcttcttccaactaggcaatctttgaacaaccagaaaggatgagagttttcaatgatttcaacttgatagata 7164897  T
Q  202 tctcttgggagattggcaagacttgtacagtccctcaaatttat 245  Q
    |  ||||||||||||  |||||||||||||||| ||||||||||    
T  7164898 ttccttgggagattgctaagacttgtacagtccttcaaatttat 7164941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 260
Target Start/End: Complemental strand, 13808781 - 13808603
Alignment:
Q  82 cctgtattttctgcaattagagttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttca 181  Q
    ||||||| || ||| || || ||||||||||||||||| || | ||| ||||||||||| | |||||||||| ||||||||||||  || ||||||||||    
T  13808781 cctgtatcttttgcgatcagtgttgtcaaggattccatctggactatgtcttcttccaacttgtcaatctttgaacaaccagaaaagattagagttttca 13808682  T
Q  182 ctgatatcaaatgatagatctctcttgggagattggcaagacttgtacagtccctcaaatttatcagaaggatattctt 260  Q
     |||| |||| ||||| ||| |   ||||||| |||||||||||||||||||| ||| ||| | ||| || ||||||||    
T  13808681 atgatttcaactgatatatcacctctgggagactggcaagacttgtacagtccttcagattgagcagtagaatattctt 13808603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 3267245 - 3267492
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    ||||||||||||||||||||||||||||||||  | ||||||||  |||| || |  ||| | || || | ||| || ||||||| || |   |  || |    
T  3267245 gataatccttcatatccacatagagatatatatccgatgcttttcaatcttaccactgaatacggcacctctttcacacctgtatcttttatgaccagtg 3267344  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
    |||| ||||||||||| |||| |||  ||||||| || | |||||||||| ||||||||||||  || |||||| |||  ||  |||| ||||  ||||     
T  3267345 ttgttaaggattccatctgcactatgccttcttctaacttgtcaatctttgaacaaccagaaatgatgagagttgtcaaagacttcaattgatttatctt 3267444  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 251  Q
      |||||||||||  |||||||||||| ||  ||||||||||||||||    
T  3267445 ctttgggagattgctaagacttgtacaatctttcaaatttatcagaag 3267492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 260
Target Start/End: Complemental strand, 20838786 - 20838530
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||||  | || ||| | || ||||||||||  || |||||| ||||||||||||    
T  20838786 gataatccttcatatccacatagtgatatatatccaatgctttttgatcttgctattgaatagggcacttgtttgataccagtatttgctgcaattagag 20838687  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
     |||||||||||||||||||| |||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||    
T  20838686 ctgtcaaggattccatttgcattatatcttcttccaatttctcaatctttgaacaaccagaaagaataagagttttcaccgatatcaattgatagatctc 20838587  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaaggatattctt 260  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  20838586 tcttgggagattggcaagacttttacagtccctcaaatttatcagaacgatattctt 20838530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 260
Target Start/End: Complemental strand, 20812431 - 20812175
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||||||  | || ||| | || ||||||||||  || |||||| ||||||||||||    
T  20812431 gataatccttcgtatccacatagtgatatatatgcaatgctttttgatcttgctattgaatagggcacttgtttgataccagtatttgctgcaattagag 20812332  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
     |||||||||||||||||||| ||||||||||||||| |  ||||||||| |||||||||||||||||||||||||||| |||||||| | |||||||||    
T  20812331 ctgtcaaggattccatttgcattatatcttcttccaacttctcaatctttgaacaaccagaaagaataagagttttcaccgatatcaatttatagatctc 20812232  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaaggatattctt 260  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  20812231 tcttgggagattggcaagacttttacagtccctcaaatttatcagaacgatattctt 20812175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 15803065 - 15802818
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||||| || ||||||||||| ||||||||||| |  |||||| |||| |||||||    
T  15803065 gataatcctttatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgccattagag 15802966  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
    || |||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||| || ||||||||||||| | |||| |||||||||||    
T  15802965 ttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgatagatctc 15802866  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 251  Q
    |||||||||||||  |||||| ||||||||| ||||||||||||||||    
T  15802865 tcttgggagattgctaagactcgtacagtccttcaaatttatcagaag 15802818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 30417971 - 30417727
Alignment:
Q  7 aatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagagttg 106  Q
    ||||||||| ||||||| || ||||||||  |||||||||| || ||||| || ||||||||  ||| ||  |  || ||  || |||| |||||||||     
T  30417971 aatccttcaaatccacacagggatatataaacaatgcttttcgaactaactatggaaaaaggtgctttttctataccagttcttgctgccattagagttt 30417872  T
Q  107 tcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctctct 206  Q
    ||||||||| |||||||| || |||||||||||||||   ||| ||| ||||||||  ||| || |||||| |||| || ||||| ||| | ||||||||    
T  30417871 tcaaggatttcatttgcactacatcttcttccaattcagtaatgtttgaacaaccatcaagtatgagagttgtcacagacatcaattgagatatctctct 30417772  T
Q  207 tgggagattggcaagacttgtacagtccctcaaatttatcagaag 251  Q
    ||| |||||| ||||||||||||| ||| | ||||||||||||||    
T  30417771 tggtagattgccaagacttgtacaatccttaaaatttatcagaag 30417727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 84 - 251
Target Start/End: Original strand, 12599179 - 12599346
Alignment:
Q  84 tgtattttctgcaattagagttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcact 183  Q
    ||||||||  ||||| || ||||||||||||||||| || | ||| ||||||||||| | |  ||||||| ||||||||||||| |||||||||||||      
T  12599179 tgtatttttggcaatcagtgttgtcaaggattccatctgtactatgtcttcttccaacttgctaatctttgaacaaccagaaagtataagagttttcaaa 12599278  T
Q  184 gatatcaaatgatagatctctcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 251  Q
    | | |||| ||||||||||| | ||||||||||| |||||||||||||||| | ||||| | ||||||    
T  12599279 gttttcaattgatagatctcccgtgggagattggtaagacttgtacagtccttgaaattcaacagaag 12599346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 6905853 - 6906100
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||| ||  ||||||||||||| |||||| |||||| |||||    
T  6905853 gataatccttcatatccgcatagggatatatacacaatgctttttgatctaacaatggaaaagggtgcttgtttgacgccagtatttgctgcaactagag 6905952  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
    |||||||||||| |||||||| ||||||||| ||||||| |||||||||| |||||||| ||||||| ||||||||||| |||||||  |||||||||||    
T  6905953 ttgtcaaggatttcatttgcactatatcttcctccaatttgtcaatctttgaacaaccaaaaagaatgagagttttcacagatatcagctgatagatctc 6906052  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 251  Q
     ||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  6906053 ccttggtagattgccaagacttgtacagtccttcaaatttatcagaag 6906100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 32411130 - 32411374
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    |||||||||||||||||||||||||||||||| || |||||||| ||||| || || ||| | || || | ||| || ||||||| || |||||| || |    
T  32411130 gataatccttcatatccacatagagatatatatgcgatgcttttcgatcttactattgaacagggcacctcttttacacctgtatcttttgcaatcagtg 32411229  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
    ||||||| ||||||||||||| |||   ||||||||| |  ||||||||| ||||||||||||| || ||||||||||  ||| |||| ||||| ||||     
T  32411230 ttgtcaacgattccatttgcactat---ttcttccaagttttcaatctttgaacaaccagaaaggatgagagttttcaaagatttcaattgatatatctt 32411326  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 251  Q
      |||||||| ||  |||||||||||||||| ||||||||||||||||    
T  32411327 ctttgggagactgttaagacttgtacagtccttcaaatttatcagaag 32411374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 6193 - 6449
Alignment:
Q  4 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattagag 103  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||  || ||||| ||  ||||||||| ||| |||||| |||||| || ||    
T  6193 gataatccttcatatccgcatagggatatatacacaatgctttttgatctaaatatggaaaagggtgcttgtttgatgccagtatttgctgcaactaaag 6292  T
Q  104 ttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 203  Q
    | ||||| |||| |||||||| ||||||||||||||||| ||| |||||| |||||||| |||| |||||||||||||| |||||||  |||||||||||    
T  6293 tcgtcaaagatttcatttgcactatatcttcttccaatttgtcgatctttgaacaaccaaaaaggataagagttttcacagatatcagctgatagatctc 6392  T
Q  204 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaaggatattctt 260  Q
     ||||| |||||| ||||||||||||| ||| ||||||| |||||||| ||||||||    
T  6393 ccttggtagattgccaagacttgtacaatccttcaaattaatcagaagaatattctt 6449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 14766993 - 14767250
Alignment:
Q  3 cgataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgcctgtattttctgcaattaga 102  Q
    ||||||||||||||| |||||||| ||||||||  ||||||||||| |||| |  || ||| | ||||||| ||| |    |||||||  |||||| ||     
T  14766993 cgataatccttcataaccacatagggatatatatccaatgctttttaatcttagtattgaatatggaacttcttttatagatgtatttgttgcaatcagt 14767092  T
Q  103 gttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatct 202  Q
    | ||||||||||||||||||||  |||||||||||||||| |||||||||| |||| || ||||| || ||||||||||  ||| |||| ||||||||||    
T  14767093 gatgtcaaggattccatttgcacaatatcttcttccaatttgtcaatctttgaacagccggaaaggatgagagttttcaaagatttcaattgatagatct 14767192  T
Q  203 ctcttgggagattggcaagacttgtacagtccctcaaatttatcagaaggatattctt 260  Q
    |||||||||||||  ||||||||||||||||| |||||||||| ||||| | ||||||    
T  14767193 ctcttgggagattttcaagacttgtacagtccttcaaatttatgagaagaacattctt 14767250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 105 - 260
Target Start/End: Original strand, 8371807 - 8371962
Alignment:
Q  105 tgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctct 204  Q
    ||||||||| ||||| |||| ||||||||||||||||| ||||||| || |||| || | ||| || ||||||||||| ||| |||| ||||||||||||    
T  8371807 tgtcaaggactccatctgcactatatcttcttccaatttgtcaatcgttgaacagcccgtaaggatgagagttttcaccgatttcaattgatagatctct 8371906  T
Q  205 cttgggagattggcaagacttgtacagtccctcaaatttatcagaaggatattctt 260  Q
    |||||||||||  ||||| || |||||||| | |||||||| ||||| | ||||||    
T  8371907 cttgggagattttcaagaattatacagtcctttaaatttatgagaagaagattctt 8371962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 36213885 - 36213931
Alignment:
Q  133 tcttccaattcgtcaatctttaaacaaccagaaagaataagagtttt 179  Q
    |||||||||| |||||||||| |||| ||||||||||| ||||||||    
T  36213885 tcttccaatttgtcaatctttgaacatccagaaagaatgagagtttt 36213931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 5447601 - 5447564
Alignment:
Q  144 gtcaatctttaaacaaccagaaagaataagagttttca 181  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  5447601 gtcaatctttaaacaaccagaaagaatgagagttttca 5447564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 5344886 - 5344840
Alignment:
Q  133 tcttccaattcgtcaatctttaaacaaccagaaagaataagagtttt 179  Q
    |||||||| | |||||||||||||||||| |||||||| ||||||||    
T  5344886 tcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttt 5344840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 5383337 - 5383303
Alignment:
Q  147 aatctttaaacaaccagaaagaataagagttttca 181  Q
    |||||||||||||||||||||||| ||||||||||    
T  5383337 aatctttaaacaaccagaaagaatgagagttttca 5383303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 5096754 - 5096685
Alignment:
Q  112 gattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttca 181  Q
    |||||||||||   ||| || |||||||| ||||||||| ||| ||| ||||||||||| ||||||||||    
T  5096754 gattccatttgttctatgtcctcttccaactcgtcaatcattatacacccagaaagaatgagagttttca 5096685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 5396979 - 5396930
Alignment:
Q  129 atcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttt 178  Q
    |||||||||||||| |||||||  |||||| |||||||||| ||||||||    
T  5396979 atcttcttccaatttgtcaatcagtaaacacccagaaagaagaagagttt 5396930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 5447171 - 5447134
Alignment:
Q  144 gtcaatctttaaacaaccagaaagaataagagttttca 181  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  5447171 gtcaatctttaaacaaccagaaagaacgagagttttca 5447134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 5128473 - 5128521
Alignment:
Q  133 tcttccaattcgtcaatctttaaacaaccagaaagaataagagttttca 181  Q
    |||||||| | ||||||| ||| ||||||||||||||| ||||||||||    
T  5128473 tcttccaacttgtcaatcattatacaaccagaaagaatgagagttttca 5128521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 5425975 - 5425887
Alignment:
Q  93 tgcaattagagttgtcaaggattccatttgcaatatatcttcttccaattcgtcaatctttaaacaaccagaaagaataagagttttca 181  Q
    |||||| ||||| || || |||||||||||   ||| || |||||||| | ||||||| ||| ||| ||||||||||| ||||||||||    
T  5425975 tgcaatcagagtggttaaagattccatttgttctatgtcctcttccaacttgtcaatcattacacacccagaaagaatgagagttttca 5425887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 4133480 - 4133527
Alignment:
Q  134 cttccaattcgtcaatctttaaacaaccagaaagaataagagttttca 181  Q
    ||||||||| ||||||  ||||||| ||||||||||||||||||||||    
T  4133480 cttccaatttgtcaataattaaacagccagaaagaataagagttttca 4133527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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