View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_16 (Length: 455)
Name: NF8294A_low_16
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 3884464 - 3884042
Alignment:
| Q |
13 |
aatatcaatcacatgatggaagaagggcttacctgatagccaccaataactaagaggttacaatatcccggatgaaatatgcacgattgaaacttgttcc |
112 |
Q |
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| T |
3884464 |
aatatcaatcacatgatggaagaagggcttacctgatagccaccaataactaagaggttacaatatcccggatgaaatatgcacgattgaaacttgttcc |
3884365 |
T |
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| Q |
113 |
cgtttgaatgcaactcgccgatgcattctccgtccgaccagactcgtgcacaatcttcactgacagaggcaatatactttcccgttctatcccaccaaat |
212 |
Q |
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| T |
3884364 |
cgtttgaatgcaactcgccgatgcattctccgttcgaccagactcgtgcacaatcttcactgacagaggcaatatactttcccgttctatcccaacaaat |
3884265 |
T |
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| Q |
213 |
ggaaagaacatctttatcatgtccctaaaatgaaacaaaattcagttatgatagtatgttacaaaacacaacattcaagcggtgaaatgaaaggtaagta |
312 |
Q |
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| T |
3884264 |
ggaaagaacatctttatcatgtccctaaaaggaaacaaaattcagttatgatagtatgttgcaaaacacaacattcaagcggtgaaatgaaaggtaagta |
3884165 |
T |
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| Q |
313 |
ccaaggtatactatagataagaattaatctttaagttacctttagattgtacacaagtttatcagtctcaacatcaattattttgagattatttccagta |
412 |
Q |
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| T |
3884164 |
ccaaggtatactatagataagaattaatctttaagttacctttagattgtacacaagtttatcagtctcaacatcaattattttgagattatttccagta |
3884065 |
T |
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| Q |
413 |
gcagtagctagaagcatgccaag |
435 |
Q |
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| T |
3884064 |
gcagtagctagaagcatgccaag |
3884042 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 35240794 - 35240846
Alignment:
| Q |
133 |
atgcattctccgtccgaccagactcgtgcacaatcttcactgacagaggcaat |
185 |
Q |
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| T |
35240794 |
atgcattgtccgtccgaccagacacgtacatcatcttcactgacagaggcaat |
35240846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 35237790 - 35237828
Alignment:
| Q |
147 |
cgaccagactcgtgcacaatcttcactgacagaggcaat |
185 |
Q |
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| T |
35237790 |
cgaccagacacgtgcacaatcttcagtgacagaggcaat |
35237828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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