View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_166 (Length: 265)

Name: NF8294A_low_166
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_166
NF8294A_low_166
[»] chr2 (8 HSPs)
chr2 (16-259)||(37210117-37210359)
chr2 (20-157)||(29927697-29927839)
chr2 (23-122)||(35494924-35495030)
chr2 (21-82)||(12892835-12892896)
chr2 (16-157)||(32978970-32979117)
chr2 (92-157)||(38342370-38342433)
chr2 (24-124)||(38283909-38284010)
chr2 (43-92)||(6069170-6069219)
[»] chr6 (7 HSPs)
chr6 (24-157)||(32549448-32549587)
chr6 (58-158)||(1038296-1038402)
chr6 (48-105)||(33900158-33900215)
chr6 (16-92)||(214772-214848)
chr6 (16-60)||(1054988-1055032)
chr6 (24-92)||(11004259-11004327)
chr6 (24-92)||(4332978-4333046)
[»] chr7 (3 HSPs)
chr7 (20-157)||(24972898-24973041)
chr7 (24-158)||(33487227-33487367)
chr7 (24-76)||(41639744-41639796)
[»] scaffold0067 (1 HSPs)
scaffold0067 (20-126)||(15287-15397)
[»] chr3 (5 HSPs)
chr3 (24-161)||(40361961-40362096)
chr3 (20-156)||(1699972-1700113)
chr3 (47-93)||(39028174-39028220)
chr3 (40-92)||(29570389-29570441)
chr3 (56-92)||(31984431-31984467)
[»] chr4 (5 HSPs)
chr4 (24-135)||(47533727-47533845)
chr4 (24-93)||(19401742-19401811)
chr4 (95-161)||(24894658-24894723)
chr4 (20-92)||(53711723-53711795)
chr4 (20-92)||(55520978-55521050)
[»] chr8 (5 HSPs)
chr8 (18-92)||(32703262-32703336)
chr8 (16-93)||(37165158-37165235)
chr8 (16-92)||(9261238-9261314)
chr8 (24-92)||(37973412-37973480)
chr8 (20-82)||(34646253-34646315)
[»] chr1 (7 HSPs)
chr1 (22-92)||(39939236-39939306)
chr1 (16-93)||(45962249-45962326)
chr1 (24-92)||(44686300-44686368)
chr1 (20-78)||(28190525-28190583)
chr1 (24-92)||(37543816-37543883)
chr1 (31-92)||(28651004-28651065)
chr1 (24-68)||(28190587-28190631)
[»] chr5 (2 HSPs)
chr5 (92-159)||(39043523-39043589)
chr5 (97-153)||(40767212-40767267)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 37210359 - 37210117
Alignment:
Q  16 acatcatgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaatgaagttatattggtaatttcgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||    
T  37210359 acatcatgaaatgacaaatttaaccccaattttcattggtagtgaactacggtcggttaaaattgatcggcagttaatgaagttatattggtaatttcgt 37210260  T
Q  116 ggtgtttcctagcgaccttttgatgtgggaacatcaattttcaaatgttgattccacattactgccaacacaatttgccaatgaagttttggtctttcaa 215  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37210259 ggtgtttcctagcaaccttt-gatgtgggaacatcaattttcaaatgttgattccacattactgccaacagaatttgccaatgaagttttggtctttcaa 37210161  T
Q  216 agactaatttctcggtgattagtctatgtatcagttcccattac 259  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  37210160 agactaatttctcggtaattagtctatgtataagttcccattac 37210117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 29927839 - 29927697
Alignment:
Q  20 catgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa-------tgaagttatattggtaattt 112  Q
    |||||||||| |||||||||||||| |||||| || ||||||||| || |||||||||| |||| ||||||||       ||| ||||||||||||||||    
T  29927839 catgaaatgataaatttaaccccaaatttcatcgg-agttaactatcgtcggttaaaatccatcagcagttaactgccgatgaggttatattggtaattt 29927741  T
Q  113 cgtggtgtttcctagcgaccttttgatgtgggaacatcaattttc 157  Q
    |||||||||||||| | ||| ||||||||||||||| ||| ||||    
T  29927740 cgtggtgtttcctatcaacc-tttgatgtgggaacaacaaatttc 29927697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 35494924 - 35495030
Alignment:
Q  23 gaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagtta-------atgaagttatattggtaatttcgt 115  Q
    |||||||||||||||| | ||| |||||| | ||||||| ||||  |||||||||||||||||||||||       ||| |||||||||| |||||||||    
T  35494924 gaaatgacaaatttaatctcaaatttcatcgatagttaattaccatcggttaaaattcatcggcagttaactgccgatggagttatattgataatttcgt 35495023  T
Q  116 ggtgttt 122  Q
    |||||||    
T  35495024 ggtgttt 35495030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 12892835 - 12892896
Alignment:
Q  21 atgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcat 82  Q
    ||||||||| ||||||||||||||||||| | |  |||||||||||| ||||||||||||||    
T  12892835 atgaaatgataaatttaaccccaattttcgtcgacagttaactaccgtcggttaaaattcat 12892896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 32979117 - 32978970
Alignment:
Q  16 acatcatgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa-------tgaagttatattggta 108  Q
    ||||||| |||||| |||||||||||||| || | |    | |||||||| | || |||||||||||||||||||||       |||  |||||||| ||    
T  32979117 acatcataaaatgataaatttaaccccaaattccttcaacaattaactactgtcgattaaaattcatcggcagttaactaccaatgagtttatattgata 32979018  T
Q  109 atttcgtggtgtttcctagcgaccttttgatgtgggaacatcaattttc 157  Q
    |||| ||||||||||||||| ||| | ||||||||||||| ||||||||    
T  32979017 attttgtggtgtttcctagcaacc-tatgatgtgggaacaacaattttc 32978970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 38342370 - 38342433
Alignment:
Q  92 atgaagttatattggtaatttcgtggtgtttcctagcgaccttttgatgtgggaacatcaattttc 157  Q
    |||| ||||||||||||||||||||||||||| |||| ||  ||||| ||||||||| ||||||||    
T  38342370 atgaggttatattggtaatttcgtggtgtttcatagcaac--tttgacgtgggaacaacaattttc 38342433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 38283909 - 38284010
Alignment:
Q  24 aaatgacaaatttaaccccaattttcatt-ggtagttaactaccgccggttaaaattcatcggcagttaatgaagttatattggtaatttcgtggtgttt 122  Q
    |||||||||| |||||| |||||||  || || ||||||||||||  |||||||||||||||  |||| ||||  |||| |||||| ||| |||||||||    
T  38283909 aaatgacaaacttaacctcaatttttcttcggcagttaactaccgttggttaaaattcatcgaaagttgatgagattattttggtattttagtggtgttt 38284008  T
Q  123 cc 124  Q
    ||    
T  38284009 cc 38284010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 6069170 - 6069219
Alignment:
Q  43 aattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    |||||| || || |||||| ||||| ||||||||||||||||||||||||    
T  6069170 aatttttatcggcagttaattaccgtcggttaaaattcatcggcagttaa 6069219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 32549448 - 32549587
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagtta-------atgaagttatattggtaatttcgtg 116  Q
    ||||||||| ||||||||||| |||||| |||||||||||| || |||||||||||||||||||||||       |||||||||||||||||||||||||    
T  32549448 aaatgacaagtttaaccccaaatttcatcggtagttaactatcgtcggttaaaattcatcggcagttaattgtcgatgaagttatattggtaatttcgtg 32549547  T
Q  117 gtgtttcctagcgaccttttgatgtgggaacatcaattttc 157  Q
    ||||||| |||| | ||||||||||||||||||||||||||    
T  32549548 gtgtttcatagc-aacttttgatgtgggaacatcaattttc 32549587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 1038402 - 1038296
Alignment:
Q  58 ttaactaccgccggttaaaattcatcggcagttaa----tgaa---gttatattggtaatttcgtggtgtttcctagcgaccttttgatgtgggaacatc 150  Q
    |||||||||| ||| ||||||||||||||||||||    ||||   |||||||||||||||| || ||||||| || | |||||| ||||||||||||||    
T  1038402 ttaactaccgtcggataaaattcatcggcagttaactactgaaagagttatattggtaattttgttgtgtttcataacaaccttt-gatgtgggaacatc 1038304  T
Q  151 aattttca 158  Q
    ||||||||    
T  1038303 aattttca 1038296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 33900158 - 33900215
Alignment:
Q  48 tcattggtagttaactaccgccggttaaaattcatcggcagttaatgaagttatattg 105  Q
    |||||||||||||||| |||||||||||||||||||||| ||  |||| |||||||||    
T  33900158 tcattggtagttaactgccgccggttaaaattcatcggctgtcgatgatgttatattg 33900215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 214772 - 214848
Alignment:
Q  16 acatcatgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    |||| |||||||||||||||||||  ||| || ||| |||||||| |||||  ||||||||||||| |||| |||||    
T  214772 acattatgaaatgacaaatttaacttcaaattacatcggtagttagctaccatcggttaaaattcaacggcggttaa 214848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 1054988 - 1055032
Alignment:
Q  16 acatcatgaaatgacaaatttaaccccaattttcattggtagtta 60  Q
    ||||||||||||||||||||||| ||||||||| ||||| |||||    
T  1054988 acatcatgaaatgacaaatttaatcccaatttttattggcagtta 1055032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 11004327 - 11004259
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    ||||||||| ||||||||||| || |||  ||||||||| |||||||||| |||| || ||||||||||    
T  11004327 aaatgacaagtttaaccccaaattccatccgtagttaacaaccgccggtttaaatccaacggcagttaa 11004259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 4332978 - 4333046
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    |||| |||||||||||  |||||||||| ||||||||| ||    |||||||||||||||| |||||||    
T  4332978 aaataacaaatttaacgtcaattttcatcggtagttaattattatcggttaaaattcatcgacagttaa 4333046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 24973041 - 24972898
Alignment:
Q  20 catgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagtta-------atgaagttatattggtaattt 112  Q
    |||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||| ||||||||||||       |||| ||||||||||||||||    
T  24973041 catgaaatgacaaatttaactccaatttccatcgatagttaactaccgccggttaaaatccatcggcagttaactgtcgatgatgttatattggtaattt 24972942  T
Q  113 cgtggtgtttcctagcgaccttttgatgtgggaacatcaattttc 157  Q
    |||| ||||||||||   || ||||||||||||||| ||||||||    
T  24972941 cgtgatgtttcctag-acccctttgatgtgggaacaacaattttc 24972898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 33487227 - 33487367
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa-------tgaagttatattggtaatttcgtg 116  Q
    |||| |||||||||||  ||| ||  || |||||||||||| |  ||||||||||||||||||||||||       |   ||||||||| ||||||||||    
T  33487227 aaataacaaatttaacttcaaattctatcggtagttaactatcagcggttaaaattcatcggcagttaactgcccatagggttatattgataatttcgtg 33487326  T
Q  117 gtgtttcctagcgaccttttgatgtgggaacatcaattttca 158  Q
    ||||||| |||| | | ||||||| |||||||||||||||||    
T  33487327 gtgtttcatagcaatc-tttgatgcgggaacatcaattttca 33487367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 41639796 - 41639744
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaa 76  Q
    |||||||||||||||||||||||| ||| |  |||||||||||  ||||||||    
T  41639796 aaatgacaaatttaaccccaatttccatcgacagttaactaccatcggttaaa 41639744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 15397 - 15287
Alignment:
Q  20 catgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagtta-------atgaagttatattggtaattt 112  Q
    ||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||||| ||||||||||       |||| ||||| |||||| |||    
T  15397 catgaaatgacaaatttaaccccaattttcat---cagttaactaccaccggttaaaattcgtcggcagttaacagtcgatgaggttattttggtatttt 15301  T
Q  113 cgtggtgtttccta 126  Q
    ||||||||||||||    
T  15300 cgtggtgtttccta 15287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 40362096 - 40361961
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa-tg-aagttatattggtaatttcgtggtgtt 121  Q
    |||||| |||||||||||||| |||||||| ||||||||||||| |||||||||| ||||| ||||||| || || ||   ||  |||||| ||||||||    
T  40362096 aaatgaaaaatttaaccccaaatttcattgatagttaactaccgtcggttaaaatccatcgacagttaactgcaactt---ttaataattttgtggtgtt 40362000  T
Q  122 tcctagcgaccttttgatgtgggaacatcaattttcaaat 161  Q
    ||||||| | |||||||| ||| |||| ||||||||||||    
T  40361999 tcctagc-aacttttgatctggaaacagcaattttcaaat 40361961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 1699972 - 1700113
Alignment:
Q  20 catgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa-------tgaagttatattggtaattt 112  Q
    |||||||| |||||||||||| ||| || ||| ||  ||||||||||| | |||||||| ||| | |||||||       |||  |||||||||||||||    
T  1699972 catgaaataacaaatttaacctcaaattccatcggccgttaactaccgtcagttaaaatccattgacagttaactgccggtgagattatattggtaattt 1700071  T
Q  113 cgtggtgtttcctagcgaccttttgatgtgggaacatcaatttt 156  Q
    | | |||||||||||| |||  |||| |||||||||||||||||    
T  1700072 catagtgtttcctagcaacc--ttgaagtgggaacatcaatttt 1700113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 39028220 - 39028174
Alignment:
Q  47 ttcattggtagttaactaccgccggttaaaattcatcggcagttaat 93  Q
    ||||| || |||||||| |||||||||||||||||||| ||||||||    
T  39028220 ttcatcggcagttaactgccgccggttaaaattcatcgacagttaat 39028174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 29570441 - 29570389
Alignment:
Q  40 cccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    |||||||||| | || || |||||||||||||||||||| |||| ||||||||    
T  29570441 cccaattttcttcggcagctaactaccgccggttaaaatccatcagcagttaa 29570389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 31984431 - 31984467
Alignment:
Q  56 agttaactaccgccggttaaaattcatcggcagttaa 92  Q
    |||||||| |||||||||||||||||||||| |||||    
T  31984431 agttaactgccgccggttaaaattcatcggcggttaa 31984467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 47533845 - 47533727
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagtta-------atgaagttatattggtaatttcgtg 116  Q
    |||||| |||||||||| ||| |||||| ||| ||||||||||||| || |||||||||||||||| |       |||||||||||||||||| || |||    
T  47533845 aaatgataaatttaacctcaaatttcatcggtcgttaactaccgccagtcaaaattcatcggcagtcaactgtcgatgaagttatattggtaaatttgtg 47533746  T
Q  117 gtgtttcctagcgaccttt 135  Q
    |||||||||| | ||||||    
T  47533745 gtgtttcctaacaaccttt 47533727  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 19401811 - 19401742
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaat 93  Q
    |||||| ||||||||||||||||||| | || |||||||||||| ||||||||||  |||||||||||||    
T  19401811 aaatgataaatttaaccccaattttcttcggcagttaactaccgtcggttaaaatctatcggcagttaat 19401742  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 24894723 - 24894658
Alignment:
Q  95 aagttatattggtaatttcgtggtgtttcctagcgaccttttgatgtgggaacatcaattttcaaat 161  Q
    |||||||||||||||||| |||||||||| |  | |||||| |||||||||||||||||||||||||    
T  24894723 aagttatattggtaattttgtggtgtttcattacaaccttt-gatgtgggaacatcaattttcaaat 24894658  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 53711723 - 53711795
Alignment:
Q  20 catgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    |||||||||||||||||||||  || |||||||| ||||||| || ||| ||||||||||||||  |||||||    
T  53711723 catgaaatgacaaatttaaccttaaatttcattgttagttaattatcgctggttaaaattcatcaacagttaa 53711795  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 55520978 - 55521050
Alignment:
Q  20 catgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    ||||||||||||| |||| |||||| || |||   ||||||| ||||||  ||||||||||||||||||||||    
T  55520978 catgaaatgacaagtttagccccaaattacatcaatagttaaataccgcaagttaaaattcatcggcagttaa 55521050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 32703336 - 32703262
Alignment:
Q  18 atcatgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    |||||||||||| ||||||||| |||||||| ||||  |||||||||| | ||||||||||  ||||||||||||    
T  32703336 atcatgaaatgataaatttaacgccaatttttattgacagttaactactgtcggttaaaatctatcggcagttaa 32703262  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 37165158 - 37165235
Alignment:
Q  16 acatcatgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaat 93  Q
    ||||||| ||||||||||||||| |||| ||||| | || |||||| |||||||||||||||  ||||| ||||||||    
T  37165158 acatcataaaatgacaaatttaatcccatttttcttcggcagttaattaccgccggttaaaacccatcgtcagttaat 37165235  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 9261238 - 9261314
Alignment:
Q  16 acatcatgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    ||||||| |||||| ||||||||||||||||||| | || |||||| ||  |||||||||||||||| | |||||||    
T  9261238 acatcattaaatgataaatttaaccccaattttcttcggcagttaattagggccggttaaaattcattgacagttaa 9261314  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 37973412 - 37973480
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    |||||| |||||||||| |||||||| |  | |||| ||||||| |||||||||||||||| |||||||    
T  37973412 aaatgataaatttaacctcaattttcttcagcagttgactaccgtcggttaaaattcatcgacagttaa 37973480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 34646315 - 34646253
Alignment:
Q  20 catgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcat 82  Q
    ||||||||||||||||||| ||||| || ||| || |||||||||||| || || ||||||||    
T  34646315 catgaaatgacaaatttaatcccaaattccatcggaagttaactaccgtcgatttaaattcat 34646253  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 39939236 - 39939306
Alignment:
Q  22 tgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    ||||||||||| |||||||| || || ||| ||||||||||||||| ||||||||||||| | ||||||||    
T  39939236 tgaaatgacaagtttaaccctaaattacatcggtagttaactaccgtcggttaaaattcagcagcagttaa 39939306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 45962326 - 45962249
Alignment:
Q  16 acatcatgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaat 93  Q
    ||||| |||||||  |||||||||  | |||||||| || ||||||| |||||||||||||||| |||||||||||||    
T  45962326 acatcgtgaaatggtaaatttaacttcgattttcatgggcagttaacgaccgccggttaaaatttatcggcagttaat 45962249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 44686368 - 44686300
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    |||| ||||||||||| ||||||||| | || |||||| |||  |||||||||||||||||||||||||    
T  44686368 aaataacaaatttaactccaattttcttcggcagttaattacatccggttaaaattcatcggcagttaa 44686300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 28190525 - 28190583
Alignment:
Q  20 catgaaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaat 78  Q
    ||||||||||||| ||||||| ||| ||||||  ||||||||||||||| |||||||||    
T  28190525 catgaaatgacaagtttaacctcaaatttcatcagtagttaactaccgctggttaaaat 28190583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 37543883 - 37543816
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    |||||| ||||||||||| || ||| |||||||||||||||| |||| || |||| |||||||||||||    
T  37543883 aaatgaaaaatttaaccctaaattttattggtagttaactactgccgatt-aaatccatcggcagttaa 37543816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 28651004 - 28651065
Alignment:
Q  31 aaatttaaccccaattttcattggtagttaactaccgccggttaaaattcatcggcagttaa 92  Q
    |||||||||| ||||||||||  | | |||| ||||| |||||||||| |||||||||||||    
T  28651004 aaatttaacctcaattttcatcagcaattaattaccgtcggttaaaatccatcggcagttaa 28651065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 28190631 - 28190587
Alignment:
Q  24 aaatgacaaatttaaccccaattttcattggtagttaactaccgc 68  Q
    ||||||||| ||||||| ||| |||||| ||||||||||||||||    
T  28190631 aaatgacaagtttaacctcaaatttcatcggtagttaactaccgc 28190587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 39043589 - 39043523
Alignment:
Q  92 atgaagttatattggtaatttcgtggtgtttcctagcgaccttttgatgtgggaacatcaattttcaa 159  Q
    |||| ||||| ||||||||||  |||||||||||||| || ||||||||||||||||| |||||||||    
T  39043589 atgaggttattttggtaattttatggtgtttcctagcaac-ttttgatgtgggaacattaattttcaa 39043523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 40767212 - 40767267
Alignment:
Q  97 gttatattggtaatttcgtggtgtttcctagcgaccttttgatgtgggaacatcaat 153  Q
    |||||||||||| |||  ||||||||| |||| ||| ||||||||||||||||||||    
T  40767212 gttatattggtatttttctggtgtttcatagc-accctttgatgtgggaacatcaat 40767267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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