View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_175 (Length: 260)
Name: NF8294A_low_175
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_175 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 24130127 - 24130246
Alignment:
| Q |
12 |
aatatatcaaagaaataaaaattagatttcaaggacaaatactgtcattgtaaatcaactttacac-taaattcaacgaaagtgtgtcattttacggcat |
110 |
Q |
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| T |
24130127 |
aatatatcaaagaaataaaaattagatttcaaggacaaatactgtcattgtaaatcaactttacacttaaatccaatgaaagtgtgtcgttttacggcat |
24130226 |
T |
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| Q |
111 |
caccttactttcgtaactta |
130 |
Q |
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| T |
24130227 |
cgccttacttttgtaactta |
24130246 |
T |
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Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 24130882 - 24130978
Alignment:
| Q |
127 |
cttataagcaaggtcccgtaagtacaactgaaatactaagtgcatggacattagatacatgttggggagttcatgggtcaagcgaaaaacaacacaa |
223 |
Q |
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| T |
24130882 |
cttataaacaaggtcccgtaagtacaactgaaatactaagtgcatggacattagatacatgttggggagttcatgggtcaagcgacaaacaacacaa |
24130978 |
T |
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