View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_178 (Length: 259)
Name: NF8294A_low_178
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_178 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 48399477 - 48399655
Alignment:
| Q |
67 |
ctccaaacaatcaaatttgagtttttacctcaacttattttgcctagatggaatcgacttgtaacctcaagttttaccattttgatcttttatttgaaat |
166 |
Q |
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| T |
48399477 |
ctccaagcaatcaaatttgagtttttacctcaacttattttgcctagatggaatcgacttgtaacctcaagttttaccattttgatcttttatttgaaat |
48399576 |
T |
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| Q |
167 |
tatggttaaattatttaactaatgatattttaaagtcttatatgttatgtcatnnnnnnngtcgtttcaaacacgaaac |
245 |
Q |
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| T |
48399577 |
tatggttaaattatttaactaatgatattttaaagtcttatatgttatgtcataaaaaaagtcgtttcaaacacgaaac |
48399655 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 42111640 - 42111604
Alignment:
| Q |
171 |
gttaaattatttaactaatgatattttaaagtcttat |
207 |
Q |
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| T |
42111640 |
gttaaattattaaactaatgatattttaaagtcttat |
42111604 |
T |
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