View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_179 (Length: 259)
Name: NF8294A_low_179
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_179 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 45550306 - 45550545
Alignment:
| Q |
7 |
gtaatgtcttttatttcatcactttctggaagccaacacacatgaaagtattaactcaatggaaaacaaattgttagggtcactggagaaagagtaaaat |
106 |
Q |
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| T |
45550306 |
gtaatgtcttttatttcatcactttctggaagccaacacacatgaaagtattaactcaatggaaaacaaattgttagtgtcactggagaaagagtaaaat |
45550405 |
T |
|
| Q |
107 |
tcacattttatcctaatccaagaaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatctatttttaac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45550406 |
tcacattttatcctaatccaagaaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattgttttcattgaatctatttttaac |
45550505 |
T |
|
| Q |
207 |
aaaacttaactaatcatacctaagtttctaaggtatatat |
246 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |
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| T |
45550506 |
aaaacttaaccgatcatacctaagtttctaaggtatatat |
45550545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 45544343 - 45544410
Alignment:
| Q |
129 |
aaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatc |
196 |
Q |
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| T |
45544343 |
aaattgattgaatatcaatgtaaataaaaaagaatgagtctattgacttatattattttcattgaatc |
45544410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 45544235 - 45544281
Alignment:
| Q |
7 |
gtaatgtcttttatttcatcactttctggaagccaacacacatgaaa |
53 |
Q |
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| T |
45544235 |
gtaatgtcttttgtttcattactttctgtaagccaacacacatgaaa |
45544281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 45545138 - 45545188
Alignment:
| Q |
10 |
atgtcttttatttcatcactttctggaagccaacacacatgaaagtattaa |
60 |
Q |
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| T |
45545138 |
atgtcttttatttcatcacttcctgtaagccaacgcaaatgaaagtattaa |
45545188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 36615992 - 36615875
Alignment:
| Q |
129 |
aaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatctatttttaacaaaacttaactaatcataccta |
228 |
Q |
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| T |
36615992 |
aaattgattgaatgtcaatgcaaataaaaatgaatgagtctattgtcttgtattattttcactgaatttatttttaacaaaactataccattcatactta |
36615893 |
T |
|
| Q |
229 |
agtttctaaggtatatat |
246 |
Q |
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| T |
36615892 |
aatttctaaggtaaatat |
36615875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 19670993 - 19670886
Alignment:
| Q |
106 |
ttcacattttatcctaa-tccaagaaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatctattttta |
204 |
Q |
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||||||||||||| || ||||| ||||| |||||||| ||||| ||||||||||||| | | ||||||||||||||||||||||||||| |||||||| |
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| T |
19670993 |
ttcacattttatcttatctccaaaaaattgattgaatcacaatgcaaataaaaatgaatgaatatattgtcttgtattattttcattgaatatattttta |
19670894 |
T |
|
| Q |
205 |
acaaaact |
212 |
Q |
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|||||||| |
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|
| T |
19670893 |
acaaaact |
19670886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 19692062 - 19691998
Alignment:
| Q |
7 |
gtaatgtcttttatttcatcactttctggaagccaacacacatgaaagtattaa-ctcaatggaa |
70 |
Q |
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||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||||||| |
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| T |
19692062 |
gtaatgtattttatttaatcactttctatgagccaacacatatgaaagtattaatctcaatggaa |
19691998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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