View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_181 (Length: 258)
Name: NF8294A_low_181
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_181 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 39695350 - 39695100
Alignment:
| Q |
8 |
ccaagaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaa |
107 |
Q |
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| T |
39695350 |
ccaagaacagtcaacacatgtcctgctcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaa |
39695251 |
T |
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| Q |
108 |
atgtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttg |
207 |
Q |
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| T |
39695250 |
atgtgaggaaaatgggtgctgatatcaagactataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttg |
39695151 |
T |
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| Q |
208 |
aagtacaaccaagctactttggattgctattggagttgctaagaatatact |
258 |
Q |
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| T |
39695150 |
aagtacaaccaagcaactttggattgctattggagttgctaagaatatact |
39695100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 39934765 - 39935015
Alignment:
| Q |
8 |
ccaagaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaa |
107 |
Q |
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| T |
39934765 |
ccaagaacagtcaacacatgtcctgctcctattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgtcaagaa |
39934864 |
T |
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| Q |
108 |
atgtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttg |
207 |
Q |
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| T |
39934865 |
aagtgagaaaaatgggtgctgatattaagacaataacagaaacaaaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttg |
39934964 |
T |
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| Q |
208 |
aagtacaaccaagctactttggattgctattggagttgctaagaatatact |
258 |
Q |
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| T |
39934965 |
aagtacaaccaagctactttggattgctattggagttgataggaatatact |
39935015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 39704262 - 39704012
Alignment:
| Q |
8 |
ccaagaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaa |
107 |
Q |
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| T |
39704262 |
ccaagaacagtcaacacatgtcctactcctattcgttgaagtggcataggcgtttttccagtaatcttatgccaacatggcaatagcactctgtcaagaa |
39704163 |
T |
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| Q |
108 |
atgtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttg |
207 |
Q |
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| T |
39704162 |
aggtgaggaaaatggatgttgatattatgactataacagaaacagaaccagctggaattttgaaatggggtcctaatgagcgatccatggctaaagcttg |
39704063 |
T |
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| Q |
208 |
aagtacaaccaagctactttggattgctattggagttgctaagaatatact |
258 |
Q |
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| T |
39704062 |
aagtaccgtcacactactttggattgctattggagttgctaagaatatact |
39704012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 39929113 - 39929317
Alignment:
| Q |
8 |
ccaagaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaa |
107 |
Q |
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||||||| ||| ||||||||||||||||||||| | |||||| || |||| ||| ||||||||||||||||||| ||| |||||||| |||||||||| |
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| T |
39929113 |
ccaagaacattgaacacatgtcctactcctatttgatggagcagcttaggagattttctggtaaccttatgccaacttggcaatagcaccctgtcaagaa |
39929212 |
T |
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| Q |
108 |
atgtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttg |
207 |
Q |
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| T |
39929213 |
aagtgaggaaaatgggtgctgatattaagactataacagaaatagaaccagctgggatttcaaaatggtatcctaaagaacgatccatgactaaagcttg |
39929312 |
T |
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| Q |
208 |
aagta |
212 |
Q |
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| T |
39929313 |
aagta |
39929317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 38061800 - 38062001
Alignment:
| Q |
18 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcct-ggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgagga |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||| | ||| | | ||| ||||||||| |||| ||||||||||||||| ||||||| |
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| T |
38061800 |
tcaacacatagcctactcctattcgttggagcggcataggcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgagga |
38061899 |
T |
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| Q |
117 |
aaatgggtgctgatattaagac---aataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtac |
213 |
Q |
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|||| | || ||||||||| || ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||| |||| |||||||||| |
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| T |
38061900 |
aaatagatgttgatattaacactataataacagaaacagaaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagtac |
38061999 |
T |
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| Q |
214 |
aa |
215 |
Q |
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|| |
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| T |
38062000 |
aa |
38062001 |
T |
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