View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_184 (Length: 256)
Name: NF8294A_low_184
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_184 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 37704699 - 37704455
Alignment:
| Q |
12 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaggtctggtcttcgaagatattatttagtttaatga |
111 |
Q |
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| T |
37704699 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatga |
37704600 |
T |
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| Q |
112 |
acaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaat |
211 |
Q |
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| T |
37704599 |
acaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaat |
37704500 |
T |
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| Q |
212 |
acgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
256 |
Q |
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| T |
37704499 |
acgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
37704455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 37699224 - 37698974
Alignment:
| Q |
12 |
atgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaggtct-ggtcttcgaagatattatttagttta |
107 |
Q |
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| T |
37699224 |
atgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttggttttccaagatgttatttagttta |
37699125 |
T |
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| Q |
108 |
atgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagg |
207 |
Q |
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| T |
37699124 |
atgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcacccccaacacaaaataagg |
37699025 |
T |
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| Q |
208 |
gaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
256 |
Q |
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| T |
37699024 |
gaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 37437764 - 37437521
Alignment:
| Q |
12 |
atgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaggtct-ggtcttcgaagatattatttagttta |
107 |
Q |
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| T |
37437764 |
atgaatttgttatcttattatcacaacttgcaataagattccaactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagttta |
37437669 |
T |
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| Q |
108 |
atgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagg |
207 |
Q |
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| T |
37437668 |
atgaacaccaaacttttctatgattgttattgaattaatattgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagg |
37437570 |
T |
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| Q |
208 |
gaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
256 |
Q |
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| T |
37437569 |
gaatagctagactgaatttgtaaacaatctaataagtcagactttttgg |
37437521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 37698861 - 37698637
Alignment:
| Q |
12 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaggtc-tggtcttcgaagatattatttagttt |
106 |
Q |
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| T |
37698861 |
atgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttagttt |
37698762 |
T |
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| Q |
107 |
aatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataag |
206 |
Q |
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| T |
37698761 |
aacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaataag |
37698687 |
T |
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| Q |
207 |
ggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
256 |
Q |
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| T |
37698686 |
ggaatacttagactcaatttgtaaacaatctaataagtcaaactttttgg |
37698637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 16841007 - 16841109
Alignment:
| Q |
27 |
tatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaggtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttc |
125 |
Q |
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| T |
16841007 |
tatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttg |
16841105 |
T |
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| Q |
126 |
tatg |
129 |
Q |
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|||| |
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| T |
16841106 |
tatg |
16841109 |
T |
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