View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_187 (Length: 256)
Name: NF8294A_low_187
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_187 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 39296419 - 39296177
Alignment:
| Q |
11 |
catagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaataagaggaaaagctgagagcgaagtga |
110 |
Q |
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| T |
39296419 |
catagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtgaagatgacgaataaaaggaaaagctgagagcgaagtga |
39296320 |
T |
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| Q |
111 |
gtgtaaggagcgagagaatggcgagtgcaacgccgagaatctctggagaagtgttttcatcgttgtttttgatcgtgagaacaagagaataaactagcca |
210 |
Q |
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| T |
39296319 |
gtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttgtgatcgtgagaacgagagaatatactagcca |
39296220 |
T |
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| Q |
211 |
tgctattgaagaaacaccgcagccactatgaattcctccaata |
253 |
Q |
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| T |
39296219 |
tgctattgaagaaacaccgcagccactatgaattcctccaata |
39296177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 39289539 - 39289294
Alignment:
| Q |
11 |
catagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaataagaggaaaagctgagagcgaagtga |
110 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||| ||||||| || |
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| T |
39289539 |
catagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcaagcgaagaga |
39289440 |
T |
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| Q |
111 |
gtgtaaggagcgagagaatggcgagtgcaacgccgagaatctctggagaag---tgttttcatcgttgtttttgatcgtgagaacaagagaataaactag |
207 |
Q |
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| T |
39289439 |
gtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataaactag |
39289340 |
T |
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| Q |
208 |
ccatgctattgaagaaacaccgcagccactatgaattcctccaata |
253 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
39289339 |
ccatgctatcgaagaaacgccgcagccactatgaattcctccaata |
39289294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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