View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_188 (Length: 256)
Name: NF8294A_low_188
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_188 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 22824336 - 22824587
Alignment:
| Q |
1 |
tcaaaagaaaaattaacaagtatatttaacataagcaaattagattgttaagacttgcttataaaacaacaaaattagaatgaccaaacggaagcataaa |
100 |
Q |
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| T |
22824336 |
tcaaaagaaaaattaacaagtatatttaacataagcaaattagattgttaagacttgcttataaaacaacaaaattagaatgaccaaacggaagcataaa |
22824435 |
T |
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| Q |
101 |
agaataacgaaggagaaacgttaagccaagaccatcaaataaatacctctagttgtctgcgactgattccagatatcttcggaagaaagttcttcaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22824436 |
agaataacgaaggagaaacgttaagccaagaccatcaaataaatacctctagttgtctgcgactgattccagatatctttggaagaaagttcttcaaatt |
22824535 |
T |
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| Q |
201 |
actagaatcgtcctcaccgatactttttgttaatgttgtattttcttcgaca |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22824536 |
actagaatcgtcctcaccgatactttttgttaatgttgtatttttttcgaca |
22824587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 22860080 - 22860272
Alignment:
| Q |
1 |
tcaaaagaaaaattaacaagtatatttaacataagcaaattagattgttaagacttgcttataaaacaacaaaattagaatgaccaaacggaagcataaa |
100 |
Q |
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||||||| ||||| ||||| |||||||| | |||||||||||||||| || |||||||||||||||| |||||| | ||||||||||| ||||||| ||| |
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| T |
22860080 |
tcaaaaggaaaat-aacaaatatatttagcgtaagcaaattagattgctatgacttgcttataaaactacaaaactggaatgaccaaatggaagcaaaaa |
22860178 |
T |
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| Q |
101 |
agaataacgaaggagaaacgttaagccaagaccatcaaataaatacctctagttgtctgcgactgattccagatatcttcggaagaaagttctt |
194 |
Q |
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|||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |
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| T |
22860179 |
agaataaccaaggagaaacattaagccaagaccacaaaataaatacctctagttgtctgcgactgattccagatatcctcgaaataaagttctt |
22860272 |
T |
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