View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_19 (Length: 441)
Name: NF8294A_low_19
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Complemental strand, 42960415 - 42959980
Alignment:
| Q |
6 |
aacaaagaagacattccaattgaagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaa |
105 |
Q |
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| T |
42960415 |
aacaaaaaagacattccaattgaagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaa |
42960316 |
T |
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| Q |
106 |
atgtggatgacaaccctgctgttaccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtcca |
205 |
Q |
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| T |
42960315 |
atgtggatgacaaccctgctgttaccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtcca |
42960216 |
T |
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| Q |
206 |
gtcacagcacttcacaaatctcactttgtgtgaaaaacaaactacagaacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcat |
305 |
Q |
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| T |
42960215 |
gtcacagcacttcacaaatctcactttgtgtgaaaaacaaactacagaacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcat |
42960116 |
T |
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| Q |
306 |
gtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttggcactatcatggtggatgccatgtagggaaggttatcgattcgg |
405 |
Q |
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| T |
42960115 |
gtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttggcactatcatggtggatgccatgtagggaaggttatcgattcgg |
42960016 |
T |
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| Q |
406 |
atcataaggttcttggtgttaacagacttcgtgtca |
441 |
Q |
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| T |
42960015 |
atcataaggttcttggtgttaacagacttcgtgtca |
42959980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 394
Target Start/End: Original strand, 5504339 - 5504708
Alignment:
| Q |
25 |
ttgaagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgc |
124 |
Q |
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|||||||||| |||||||| || |||| || ||||||| | | | |||||| |||||| ||||| ||| ||||||| |||||| |||| || ||||| |
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| T |
5504339 |
ttgaagcattcaagggaggctttgtcttgtccaaagttggcagtgcttggtcagtaggtgagctcaagttggtcaacaccaatgtgaatgaaaatcctgc |
5504438 |
T |
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| Q |
125 |
tgttaccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaat |
224 |
Q |
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| T |
5504439 |
tgttaccttcaactacttcagtcatccatacgatttaaagcgctgcgtcgaagggatcagcatggccattaaagtagtccagtcagaacacttcacaaac |
5504538 |
T |
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| Q |
225 |
ctcactttgtgtgaaaaacaaactacagaacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcac |
324 |
Q |
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| T |
5504539 |
tacacattatgtaaaagagaaaccgcagagagacttcttaaccttagtgtgaagactactgtcaacttcataccaaaacatgccaatgacacatcttccc |
5504638 |
T |
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| Q |
325 |
tagaacagttttgtagagacactgtgatcactatttggcactatcatggtggatgccatgtagggaaggt |
394 |
Q |
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| T |
5504639 |
tagagcagttctgcaaagacactgtcatcacaatttggcattaccatggtggatgtcatgtgggaaaggt |
5504708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 3094265 - 3094314
Alignment:
| Q |
327 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
376 |
Q |
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| T |
3094265 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
3094314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 3085419 - 3085468
Alignment:
| Q |
327 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
376 |
Q |
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| T |
3085419 |
gaacaattttgtagagacactgtgatgacaatatggcattatcatggtgg |
3085468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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