View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_20 (Length: 441)
Name: NF8294A_low_20
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 45099027 - 45099455
Alignment:
| Q |
8 |
acatcaaagtaaagcaagttgagcgaagtactcacaatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatg |
107 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45099027 |
acatcaaagtaaagcaagttgagcgaagtactaacaatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatg |
45099126 |
T |
|
| Q |
108 |
ttatattaaaccttgaagctaaacttgagttttccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctccctt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45099127 |
ttatattaaaccttgaagctaaacttgagttttccctattcatctgttgagcagtcatgtaaacattttcaggcgcgatctctggagtagcacctccctt |
45099226 |
T |
|
| Q |
208 |
ctggtaatcaggtgtatgagtgcttactgcatgtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcatta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45099227 |
ctggtaatcaggtgtatgagtgcttactgcatgtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtgtcatta |
45099326 |
T |
|
| Q |
308 |
aaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaacca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45099327 |
aaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaacca |
45099426 |
T |
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| Q |
408 |
accttgttccataatctataacaaaatct |
436 |
Q |
| |
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| T |
45099427 |
accttgttccataatctataacaaaatct |
45099455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 140 - 360
Target Start/End: Complemental strand, 17348858 - 17348638
Alignment:
| Q |
140 |
tccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcat |
239 |
Q |
| |
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||||||||||||| ||||||||||| |||||| | || || ||||||||| || || || || ||||| ||||| ||||| |||||||| ||| || |
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| T |
17348858 |
tccctattcatctcctgagcagtcatataaacactatccggcgcgatctctctagccgcgccccctttctgataatctggtgtgtgagtgctcactacag |
17348759 |
T |
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| Q |
240 |
gtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcattaaaaggagttattttcatacctcctacattaat |
339 |
Q |
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|||||||| ||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||| |
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| T |
17348758 |
ccttagctgcatccttaaaaaccagaaaatccttatcaggaatccatgttctccaaagggtatcattaaaaggagttaatttttcacctccaacattaat |
17348659 |
T |
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| Q |
340 |
cctatgaacagtttccaaaac |
360 |
Q |
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|||||||| |||||| ||||| |
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| T |
17348658 |
cctatgaatagtttctaaaac |
17348638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 17363945 - 17363885
Alignment:
| Q |
301 |
atcattaaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacc |
361 |
Q |
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||||||||| ||||||||||||| ||| | || ||||||||||||| |||||| |||||| |
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| T |
17363945 |
atcattaaagggagttattttcaaaccatcaacgttaatcctatgaatagtttctaaaacc |
17363885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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