View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_202 (Length: 250)

Name: NF8294A_low_202
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_202
NF8294A_low_202
[»] chr5 (7 HSPs)
chr5 (1-246)||(29013081-29013327)
chr5 (1-201)||(29365815-29366015)
chr5 (73-232)||(24085110-24085269)
chr5 (151-246)||(29014953-29015048)
chr5 (161-217)||(11095406-11095462)
chr5 (168-218)||(10391444-10391494)
chr5 (175-215)||(34117473-34117513)
[»] chr6 (1 HSPs)
chr6 (164-218)||(10016725-10016779)
[»] chr4 (2 HSPs)
chr4 (169-220)||(24193632-24193683)
chr4 (165-218)||(28615436-28615489)
[»] chr2 (3 HSPs)
chr2 (168-218)||(41809163-41809213)
chr2 (169-217)||(787435-787483)
chr2 (162-218)||(6547991-6548047)
[»] chr7 (1 HSPs)
chr7 (165-218)||(529464-529517)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 29013327 - 29013081
Alignment:
Q  1 tattgtaaattgttggttcataactttcatatagattatggaaaaa-tgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggttttta 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||    
T  29013327 tattgtaaattgttggttcataactttcatatagattatggaaaaaatgtttctttttgtagcttgtttttttgtttctcttacgtgagtgaggttttta 29013228  T
Q  100 ttcaatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgc 199  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29013227 ttcaatatgctctattgggttcaattatttagtggaaaagttgaaaactttgatttaaagtttaaggtctgtttggattggattattgaagcttatctgc 29013128  T
Q  200 tggcataaacacttgtgagttatgaagtacgaatacaaacaccaaac 246  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  29013127 tggcataaacacttgtgagttatgaagtacgaacacaaacaccaaac 29013081  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 29366015 - 29365815
Alignment:
Q  1 tattgtaaattgttggttcataactttcatatagattatgg-aaaaatgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggttttta 99  Q
    ||||||||||  ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||       |||||||| | |||||||| |||||||    
T  29366015 tattgtaaatgtttgattcataaccttcatatagattatgggaaaaatgtttctttttgtagcttgtttttttgtttctctcatgtgagtgaagttttta 29365916  T
Q  100 ttcaatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgc 199  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||    
T  29365915 ttcaatatgctctattgggttcaactatttagtggaaaaattgaaaactttgattg-aagtttaaggtccatttggattggattattgaggcttatctgc 29365817  T
Q  200 tg 201  Q
    ||    
T  29365816 tg 29365815  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 232
Target Start/End: Complemental strand, 24085269 - 24085110
Alignment:
Q  73 gtttctcttacgtgagtgaggtttttattcaatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtt 172  Q
    |||||||||| |||| ||||||||| ||||| | |  | |||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||    
T  24085269 gtttctcttatgtgactgaggttttaattcagtttactatattgggttcaattattttgtagaaaagttgaaaacgtggattgaaagtttaaggtctgtt 24085170  T
Q  173 tggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaa 232  Q
    ||||||||||||| |||||||| |  ||| |||||||||||||||||| ||||| |||||    
T  24085169 tggattggattatagaagcttaccgactgacataaacacttgtgagttttgaagcacgaa 24085110  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 29015048 - 29014953
Alignment:
Q  151 gattgaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaatacaaacaccaaac 246  Q
    |||||||||||||||| | |||||||||||||||| |||||||| | |||| ||||||||||| |||||| ||||| |||||  || |||||||||    
T  29015048 gattgaaagtttaaggcccgtttggattggattatagaagcttaccggctgacataaacacttctgagttctgaagcacgaacccagacaccaaac 29014953  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 11095406 - 11095462
Alignment:
Q  161 ttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtga 217  Q
    |||||||||||||||| ||| ||||| |||||||||| ||| |||||||||||||||    
T  11095406 ttaaggtctgtttggactggtttatttaagcttatctactgacataaacacttgtga 11095462  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 10391494 - 10391444
Alignment:
Q  168 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 218  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  10391494 ctgtttcgattggcttatttaagcttatctgctggcataatcacttgtgag 10391444  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 34117473 - 34117513
Alignment:
Q  175 gattggattattgaagcttatctgctggcataaacacttgt 215  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  34117473 gattggcttattggagcttatctactggcataaacacttgt 34117513  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 10016779 - 10016725
Alignment:
Q  164 aggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 218  Q
    ||||||||||||||||| |||||  ||||||||| | ||||||||||||||||||    
T  10016779 aggtctgtttggattggtttatttgagcttatctacaggcataaacacttgtgag 10016725  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 24193683 - 24193632
Alignment:
Q  169 tgtttggattggattattgaagcttatctgctggcataaacacttgtgagtt 220  Q
    |||||||||||  |||||  ||||||||| ||||||||||||||||||||||    
T  24193683 tgtttggattgacttatttgagcttatctcctggcataaacacttgtgagtt 24193632  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 28615489 - 28615436
Alignment:
Q  165 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 218  Q
    |||||||||||||||  ||||| ||| |||||| || |||||||||||||||||    
T  28615489 ggtctgtttggattgacttatttaagtttatctactagcataaacacttgtgag 28615436  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 41809163 - 41809213
Alignment:
Q  168 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 218  Q
    ||||||||||||| || || |||||||| || |||||||||||||||||||    
T  41809163 ctgtttggattggttttttaaagcttatttgttggcataaacacttgtgag 41809213  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 787483 - 787435
Alignment:
Q  169 tgtttggattggattattgaagcttatctgctggcataaacacttgtga 217  Q
    ||||||||||||||||||  ||| ||||| ||||||||| |||||||||    
T  787483 tgtttggattggattattcgagcatatctactggcataagcacttgtga 787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 6548047 - 6547991
Alignment:
Q  162 taaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 218  Q
    ||||||||||||||||||  ||||| |||||||||| || ||||||  |||||||||    
T  6548047 taaggtctgtttggattgacttattcaagcttatctactagcataagaacttgtgag 6547991  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 529517 - 529464
Alignment:
Q  165 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 218  Q
    |||||| ||||||||  |||||  ||||||||| ||||||||||||||||||||    
T  529517 ggtctgattggattgacttatttgagcttatctactggcataaacacttgtgag 529464  T

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