View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8294A_low_208 (Length: 250)
Name: NF8294A_low_208
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8294A_low_208 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 41086189 - 41086368
Alignment:
| Q |
12 |
tttgtatctggtgtgttatagatcatttatagctctttgatggttttgggtggaaataaggaatgattgttgtcgctaaactgaaacaaatttgatgatt |
111 |
Q |
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| T |
41086189 |
tttgtatctggtgtgttataaatcatttatagctctttgatggttttggctggaaataaagaatgattgttgtcgctaaactgaaacaaatttgatgatt |
41086288 |
T |
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| Q |
112 |
gcggatctaatgctgagtttatgtcatggaatgtgttctgctctggagcactgttgtgtcctgtgccatgttgctgattt |
191 |
Q |
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| T |
41086289 |
gcggatctaatgctgagtttatgtcatggaatgtgttctgctctggagcactgttgtgtcctgtgccatgttgctgattt |
41086368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 41086389 - 41086435
Alignment:
| Q |
190 |
ttgatataccttggaggattgggactctggtagttaatatggtgata |
236 |
Q |
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| T |
41086389 |
ttgatataccttggaggattgggactctggtagttaatatggtgata |
41086435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 41074813 - 41074875
Alignment:
| Q |
129 |
tttatgtcatggaatgtgttctgctctggagcactgttgtgtcctgtgccatgttgctgattt |
191 |
Q |
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| T |
41074813 |
tttatgtcattgaaagttttctgctctggaatactgctgtgttttgtgccatgttgctgattt |
41074875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 41074896 - 41074942
Alignment:
| Q |
190 |
ttgatataccttggaggattgggactctggtagttaatatggtgata |
236 |
Q |
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| T |
41074896 |
ttgatataccttcgaggatcaggactctggaagttaatatggtgata |
41074942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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