View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_209 (Length: 250)

Name: NF8294A_low_209
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_209
NF8294A_low_209
[»] chr4 (17 HSPs)
chr4 (14-146)||(40390972-40391104)
chr4 (143-242)||(40391556-40391655)
chr4 (27-148)||(38377891-38378011)
chr4 (20-127)||(784061-784168)
chr4 (11-146)||(15025858-15025991)
chr4 (143-242)||(40380215-40380314)
chr4 (11-119)||(11672485-11672592)
chr4 (22-146)||(48282800-48282920)
chr4 (56-125)||(15882103-15882172)
chr4 (61-125)||(10574064-10574128)
chr4 (13-146)||(6449624-6449756)
chr4 (55-146)||(23410332-23410424)
chr4 (13-146)||(33610026-33610159)
chr4 (56-125)||(52123652-52123721)
chr4 (13-114)||(31049959-31050061)
chr4 (13-100)||(20403240-20403328)
chr4 (70-146)||(35414570-35414646)
[»] chr8 (17 HSPs)
chr8 (11-144)||(12596934-12597067)
chr8 (13-146)||(10467436-10467570)
chr8 (15-128)||(32797017-32797130)
chr8 (13-129)||(39344665-39344781)
chr8 (23-146)||(26938819-26938941)
chr8 (13-125)||(33038297-33038408)
chr8 (12-129)||(17219673-17219791)
chr8 (59-125)||(17153669-17153735)
chr8 (19-146)||(8026105-8026231)
chr8 (11-128)||(42023957-42024073)
chr8 (24-128)||(33695214-33695318)
chr8 (39-126)||(16483876-16483963)
chr8 (59-125)||(17156948-17157014)
chr8 (18-107)||(24916031-24916119)
chr8 (72-146)||(35054983-35055057)
chr8 (88-125)||(17143142-17143179)
chr8 (22-115)||(24292165-24292257)
[»] chr5 (19 HSPs)
chr5 (10-146)||(16089764-16089900)
chr5 (11-146)||(15069998-15070134)
chr5 (10-146)||(19343631-19343767)
chr5 (13-146)||(36235836-36235969)
chr5 (13-146)||(5459091-5459223)
chr5 (53-148)||(1298817-1298911)
chr5 (16-146)||(26724196-26724327)
chr5 (40-127)||(38948632-38948719)
chr5 (47-109)||(6502283-6502345)
chr5 (17-65)||(35270758-35270806)
chr5 (13-128)||(38607378-38607494)
chr5 (20-127)||(30403539-30403647)
chr5 (13-100)||(14820414-14820501)
chr5 (14-45)||(26188812-26188843)
chr5 (54-109)||(34005654-34005709)
chr5 (13-108)||(34784027-34784121)
chr5 (16-78)||(39058478-39058540)
chr5 (10-107)||(5159469-5159566)
chr5 (81-138)||(39057143-39057200)
[»] chr3 (15 HSPs)
chr3 (10-146)||(44446805-44446941)
chr3 (13-146)||(28769459-28769592)
chr3 (11-148)||(50334584-50334723)
chr3 (11-146)||(34359411-34359546)
chr3 (13-146)||(20314970-20315101)
chr3 (13-128)||(38673254-38673370)
chr3 (13-127)||(44648123-44648235)
chr3 (11-127)||(39340851-39340965)
chr3 (39-146)||(52423102-52423210)
chr3 (15-119)||(17268915-17269020)
chr3 (59-130)||(41544534-41544605)
chr3 (18-92)||(45743817-45743891)
chr3 (31-76)||(2382870-2382915)
chr3 (81-146)||(20336927-20336992)
chr3 (13-65)||(16876466-16876518)
[»] chr6 (14 HSPs)
chr6 (10-147)||(17957109-17957246)
chr6 (23-146)||(17157991-17158114)
chr6 (19-146)||(6197898-6198025)
chr6 (9-128)||(4254508-4254627)
chr6 (19-119)||(10313395-10313495)
chr6 (13-146)||(24672352-24672483)
chr6 (26-146)||(4408948-4409058)
chr6 (13-93)||(34187125-34187205)
chr6 (13-129)||(30465127-30465243)
chr6 (42-133)||(12611904-12611994)
chr6 (13-85)||(10516584-10516655)
chr6 (39-146)||(5644646-5644753)
chr6 (13-71)||(2538638-2538695)
chr6 (88-146)||(12338950-12339008)
[»] chr7 (14 HSPs)
chr7 (10-147)||(20132133-20132270)
chr7 (19-127)||(28098618-28098727)
chr7 (13-146)||(13009317-13009451)
chr7 (11-123)||(11297838-11297951)
chr7 (53-126)||(34471348-34471421)
chr7 (13-146)||(27567617-27567752)
chr7 (39-125)||(48696447-48696532)
chr7 (13-146)||(30851589-30851722)
chr7 (15-134)||(33991899-33992019)
chr7 (53-101)||(39596738-39596786)
chr7 (88-146)||(22485125-22485182)
chr7 (13-107)||(25067734-25067828)
chr7 (11-126)||(25411518-25411633)
chr7 (5-107)||(12925288-12925389)
[»] chr1 (9 HSPs)
chr1 (11-142)||(20986008-20986141)
chr1 (13-146)||(33752913-33753046)
chr1 (59-146)||(29307555-29307642)
chr1 (11-125)||(13392890-13393006)
chr1 (11-146)||(16545363-16545497)
chr1 (22-102)||(37470903-37470983)
chr1 (59-146)||(29102970-29103057)
chr1 (88-146)||(23230836-23230894)
chr1 (80-145)||(35218150-35218215)
[»] chr2 (13 HSPs)
chr2 (13-146)||(35954306-35954440)
chr2 (13-118)||(34904093-34904198)
chr2 (13-128)||(8794655-8794770)
chr2 (13-133)||(10077686-10077808)
chr2 (11-146)||(39293064-39293198)
chr2 (12-128)||(30640995-30641112)
chr2 (13-127)||(6191172-6191285)
chr2 (13-127)||(24490520-24490638)
chr2 (13-138)||(31994684-31994809)
chr2 (14-113)||(855648-855752)
chr2 (14-146)||(29242513-29242646)
chr2 (39-138)||(27694475-27694574)
chr2 (12-108)||(434511-434607)
[»] scaffold0233 (1 HSPs)
scaffold0233 (23-128)||(16894-16999)
[»] scaffold0020 (1 HSPs)
scaffold0020 (13-128)||(152141-152256)
[»] scaffold0005 (1 HSPs)
scaffold0005 (11-148)||(253697-253833)
[»] scaffold0478 (1 HSPs)
scaffold0478 (59-125)||(3352-3418)
[»] scaffold0036 (1 HSPs)
scaffold0036 (16-127)||(48396-48509)
[»] scaffold1911 (1 HSPs)
scaffold1911 (59-125)||(113-179)
[»] scaffold0720 (2 HSPs)
scaffold0720 (11-128)||(5440-5553)
scaffold0720 (97-134)||(7458-7495)
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-107)||(363064-363165)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 40390972 - 40391104
Alignment:
Q  14 atattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggga 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40390972 atattgtagtttgtaagaatagtctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaaatagtccctataaaatgcaaataggga 40391071  T
Q  114 ctaaaagtgaataaataatttgtagggactaaa 146  Q
    ||||||||||||||| |||||||||||||||||    
T  40391072 ctaaaagtgaataaaaaatttgtagggactaaa 40391104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 40391556 - 40391655
Alignment:
Q  143 taaattgaattatatacatctctcggttgaattatcacattattatctcacgttttttactcctcattttaatgattaccaaatcctcttacaatgctca 242  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  40391556 taaattgaattatatacatctatctattgaattatcacattattatctcaatttttttactcctcattttactgattaccaaatcctcttacaacgctca 40391655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 38377891 - 38378011
Alignment:
Q  27 taagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaata 126  Q
    |||||||| || ||||||| ||||| ||||| |||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  38377891 taagaatagtccctattttaaaaactttttataaaaaatgaacacttttagtcctccaaaatagtccctataaaatgcaaatagggaataaaagtgaata 38377990  T
Q  127 aataatttgtagggactaaatt 148  Q
    || ||||| || ||||||||||    
T  38377991 aaaaattt-taaggactaaatt 38378011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 784168 - 784061
Alignment:
Q  20 tagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaa 119  Q
    |||||| ||| ||||||| ||||||| ||||| |||||||||||||| ||| |||||||  |||||| |||||| ||||||||| ||||||  |||||||    
T  784168 tagtttctaaaaataatccctattttgaaaactttttacaaaaaatggatatttttagtcatccaaaatagtccgtataaaatgaaaatagaaactaaaa 784069  T
Q  120 gtgaataa 127  Q
    ||||||||    
T  784068 gtgaataa 784061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 15025858 - 15025991
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    |||||||| |||||||| | |||| || ||||||| ||||| ||||||||||| || ||||||| ||| ||||||| |||||| ||||||||  ||||||    
T  15025858 aaaatattatagtttgtgataatagtccctattttgaaaactttttacaaaaa-tgtatacttt-agtcctccaaaatagtccttataaaatataaatag 15025955  T
Q  111 ggactaaaagtgaataaataatttgtagggactaaa 146  Q
    ||||||||| ||||||||   |||||||||||||||    
T  15025956 ggactaaaaatgaataaaatttttgtagggactaaa 15025991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 40380215 - 40380314
Alignment:
Q  143 taaattgaattatatacatctctcggttgaattatcacattattatctcacgttttttactcctcattttaatgattaccaaatcctcttacaatgctca 242  Q
    |||||||||| |||| |||||||   ||||||||||||| ||| ||||||| |||||||||| ||| |||| |||||||||||||||||||||| |||||    
T  40380215 taaattgaatcatattcatctctttattgaattatcacaatataatctcactttttttactcttcactttactgattaccaaatcctcttacaacgctca 40380314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 11672592 - 11672485
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    ||||| |||||||||||||||||| |||||||||| |||| |  |||| ||||||| ||||||||||| || |||| |||||||||||||||  |||||     
T  11672592 aaaattttgtagtttgtaagaatagtctctattttaaaaaaaaattac-aaaaatgtatacttttagtcctgcaaaatagtccctataaaatataaataa 11672494  T
Q  111 ggactaaaa 119  Q
     ||||||||    
T  11672493 agactaaaa 11672485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 48282800 - 48282920
Alignment:
Q  22 gtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagt 121  Q
    ||||||||||||| ||| |||||  ||||| |||||||||||||  ||| ||||||| ||| ||| ||||| |||||||||| ||    |||||||||||    
T  48282800 gtttgtaagaatagtctttatttaaaaaac-ttttacaaaaaatagatatttttagtcctctaaaatagtctctataaaatgtaat---ggactaaaagt 48282895  T
Q  122 gaataaataatttgtagggactaaa 146  Q
    ||||||||  |||||||||||||||    
T  48282896 gaataaattttttgtagggactaaa 48282920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 15882172 - 15882103
Alignment:
Q  56 tacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaat 125  Q
    ||||||||||| ||| ||||||| ||||||  |||||||| |||||| ||||||||||||||||||||||    
T  15882172 tacaaaaaatggatagttttagtcctccaagatagtccctctaaaatacaaatagggactaaaagtgaat 15882103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 10574064 - 10574128
Alignment:
Q  61 aaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaat 125  Q
    |||||| ||| ||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||    
T  10574064 aaaatggatatttttagtcctccaaaatagtccctgtaaaatgcaaatagggactaaaggtgaat 10574128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 6449756 - 6449624
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    |||| |||||||||||| |||| || ||||||| ||||| |||| ||||| ||| | |||||||||  | |||| |||||  ||| |||| ||||||  |    
T  6449756 aataatgtagtttgtaaaaatagtccctattttaaaaactttttgcaaaagatggacacttttagtctttcaaaatagtctttat-aaatacaaatatcg 6449658  T
Q  113 actaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||||||||||||||  |||||| ||||||||    
T  6449657 actaaaagtgaataaattttttgtaaggactaaa 6449624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 23410424 - 23410332
Alignment:
Q  55 ttacaaaaaatgaatacttttagttctccaaactagtccctata-aaatgcaaatagggactaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||||||||  ||||||||||| ||||||| |||| | |||| |||||||||||  || |||||||||||| ||  |||||||||||||||    
T  23410424 ttacaaaaaatatatacttttagtcctccaaaatagttcatatataaatgcaaataaagaataaaagtgaatatattttttgtagggactaaa 23410332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 33610026 - 33610159
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    ||||||||||||| |||||||| ||  |||||| ||||| |||| |||||||||  ||| |||||| |||  || ||||||  |||| || |||||| |     
T  33610026 aatattgtagtttataagaatagtccttattttgaaaactttttgcaaaaaatgtctacgtttagtcctctgaaatagtccaaataatatccaaataaga 33610125  T
Q  113 actaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||||||| ||||| | ||| ||||| |||||    
T  33610126 actaaaagtggataaaaattttatagggtctaaa 33610159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 52123721 - 52123652
Alignment:
Q  56 tacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaat 125  Q
    ||||||| ||| ||||||||||| ||||||| ||||| ||||||||| |||||||  | |||||||||||    
T  52123721 tacaaaatatggatacttttagtcctccaaaatagtctctataaaatacaaatagatattaaaagtgaat 52123652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 31050061 - 31049959
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaa-tgaatacttttagttctccaaactagtccctataaaatgcaaatagg 111  Q
    |||||||||| ||||||  ||| ||  |||||| ||||| |||||||||||| || | | ||||||||||||||| ||||| |||| ||||| ||||| |    
T  31050061 aatattgtagcttgtaaagatagtcattattttgaaaaccttttacaaaaaaatggacatttttagttctccaaaatagtctctatgaaatgtaaatatg 31049962  T
Q  112 gac 114  Q
    |||    
T  31049961 gac 31049959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 20403240 - 20403328
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttac-aaaaaatgaatacttttagttctccaaactagtccctataaa 100  Q
    |||||| ||||||||||||||| || ||| | | ||||| |||||| |||||||| ||| ||||| | ||||| | |||||||||||||    
T  20403240 aatattatagtttgtaagaatagtccctaatctaaaaactttttacaaaaaaatggatatttttattcctccacaatagtccctataaa 20403328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 35414570 - 35414646
Alignment:
Q  70 acttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaataaataatttgtagggactaaa 146  Q
    ||||||||| || |||  |||||||||||||||| |||||  |||||||| ||||| || ||||| || ||||||||    
T  35414570 acttttagtccttcaacatagtccctataaaatgtaaatatagactaaaaatgaatcaaaaatttatatggactaaa 35414646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 12596934 - 12597067
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    ||||||||||||||||||| | || |||||||||| |||||||||||||||||||| |||  |||||| ||||||| |||||||||||||||||||||||    
T  12596934 aaaatattgtagtttgtaaaattagtctctattttgaaaacattttacaaaaaatggatatatttagtcctccaaaatagtccctataaaatgcaaatag 12597033  T
Q  111 ggactaaaagtgaataaataatttgtagggacta 144  Q
    |||||||| ||||||||| |||||||||||||||    
T  12597034 ggactaaacgtgaataaaaaatttgtagggacta 12597067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 10467570 - 10467436
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaa-tgaatacttttagttctccaaactagtccctataaaatgcaaatagg 111  Q
    |||||||||  ||||||||||| || ||||||| ||||| |||||||||||| || | ||||||||| ||||||| ||||||||||||||||||||||||    
T  10467570 aatattgtaacttgtaagaatagtccctattttgaaaactttttacaaaaaaatggacacttttagtcctccaaaatagtccctataaaatgcaaatagg 10467471  T
Q  112 gactaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||||| |||||||||  |||||| ||||||||    
T  10467470 gactaaaaatgaataaattttttgtaaggactaaa 10467436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 32797017 - 32797130
Alignment:
Q  15 tattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggac 114  Q
    |||||||||||||||||||| ||  |||||| ||||| |||||||||||||  |||||||| || ||||||| |||||| |||||||||||| |||||||    
T  32797017 tattgtagtttgtaagaatagtccatattttaaaaactttttacaaaaaatagatacttttggtcctccaaaatagtccttataaaatgcaattagggac 32797116  T
Q  115 taaaagtgaataaa 128  Q
    ||||||||||||||    
T  32797117 taaaagtgaataaa 32797130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 39344665 - 39344781
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    |||||||||||||||||||||| |   |||||| ||||| ||||| ||||| || | ||||||||| ||||||| ||||| |||||||||| ||||||||    
T  39344665 aatattgtagtttgtaagaatagttcatattttgaaaaccttttaaaaaaattggacacttttagtcctccaaaatagtctctataaaatgtaaataggg 39344764  T
Q  113 actaaaagtgaataaat 129  Q
    |||||||||||||||||    
T  39344765 actaaaagtgaataaat 39344781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 26938941 - 26938819
Alignment:
Q  23 tttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtg 122  Q
    |||||||||||| || ||||||| ||||| ||||  | |||||| | ||||||||| || |||| |||||||| ||||||||||||||||||||||||||    
T  26938941 tttgtaagaatagtccctattttgaaaactttttt-ataaaatggacacttttagtccttcaaaatagtccctttaaaatgcaaatagggactaaaagtg 26938843  T
Q  123 aataaataatttgtagggactaaa 146  Q
    |||||||  |||||||||||||||    
T  26938842 aataaattttttgtagggactaaa 26938819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 33038297 - 33038408
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    ||||||| |||||||||||||| |  ||||||| ||||| ||||||| |||||| |||||||||||||| |||  ||||||||||||||| |||||||||    
T  33038297 aatattgcagtttgtaagaatagttcctattttaaaaactttttacagaaaatggatacttttagttct-caagatagtccctataaaattcaaataggg 33038395  T
Q  113 actaaaagtgaat 125  Q
    |||||||| ||||    
T  33038396 actaaaagcgaat 33038408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 17219791 - 17219673
Alignment:
Q  12 aaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaa-tgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    ||||||| |||||||||| |||| || ||||||| ||||| || ||||||||| || ||| ||||||| ||||||| |||||||| || | |||||||||    
T  17219791 aaatattttagtttgtaaaaatagtccctattttgaaaactttatacaaaaaaatggatatttttagtcctccaaaatagtccctttacagtgcaaatag 17219692  T
Q  111 ggactaaaagtgaataaat 129  Q
    |||||||||||||||||||    
T  17219691 ggactaaaagtgaataaat 17219673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 17153669 - 17153735
Alignment:
Q  59 aaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaat 125  Q
    |||||||| ||||||||||| ||||||  |||||||| |||||||||||||||||||||||||||||    
T  17153669 aaaaaatggatacttttagtcctccaagatagtccctctaaaatgcaaatagggactaaaagtgaat 17153735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 8026105 - 8026231
Alignment:
Q  19 gtagtttgtaagaataatctctatttttaaaacat-tttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaa 117  Q
    |||||||||||||||| || ||||||| |||| |  ||||| ||||||  | ||||||||| |||||||  |||||||||||||||||||||  || |||    
T  8026105 gtagtttgtaagaatagtccctattttaaaaaaaaatttacgaaaaattgacacttttagtactccaaa--agtccctataaaatgcaaataaagagtaa 8026202  T
Q  118 aagtgaataaataatttgtagggactaaa 146  Q
    ||||||||||||  ||| |||||||||||    
T  8026203 aagtgaataaattttttatagggactaaa 8026231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 42024073 - 42023957
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    |||||||||||||| |||| |||| || ||||||  ||  | |||||||||| ||| | ||||||||| ||||||| |||||| ||||||| ||||||||    
T  42024073 aaaatattgtagtt-gtaataatagtccctatttaaaattctttttacaaaatatgtacacttttagtcctccaaaatagtccatataaaaagcaaatag 42023975  T
Q  111 ggactaaaagtgaataaa 128  Q
    ||||||||| ||||||||    
T  42023974 ggactaaaaatgaataaa 42023957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 33695214 - 33695318
Alignment:
Q  24 ttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtga 123  Q
    ||||||||||| ||| |||||| |||| |||||||||||| |||||| ||||| | ||||||| ||||| |||||||||  |||||  || ||||| |||    
T  33695214 ttgtaagaatagtctttattttgaaaagattttacaaaaactgaatatttttattcctccaaaatagtctctataaaatataaataaagattaaaaatga 33695313  T
Q  124 ataaa 128  Q
    |||||    
T  33695314 ataaa 33695318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 16483876 - 16483963
Alignment:
Q  39 ctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaata 126  Q
    ||||||| ||||| ||| ||||||| || ||| |||||||  |||||| ||||| || ||||||||||||||| ||||||||||||||    
T  16483876 ctattttgaaaacttttaacaaaaattggatatttttagtcatccaaaatagtctctgtaaaatgcaaataggaactaaaagtgaata 16483963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 17157014 - 17156948
Alignment:
Q  59 aaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaat 125  Q
    |||||||| ||||||||||| ||||||  || ||||| ||||||||||||||||||||| |||||||    
T  17157014 aaaaaatggatacttttagtcctccaagataatccctttaaaatgcaaatagggactaagagtgaat 17156948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 24916119 - 24916031
Alignment:
Q  18 tgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaa 107  Q
    |||||||||||| |||| || |||||||  |||| ||||| |||||||| ||| ||||||| ||||||| |||| |||||||||||||||    
T  24916119 tgtagtttgtaaaaatagtc-ctattttggaaactttttagaaaaaatggatatttttagtcctccaaaatagttcctataaaatgcaaa 24916031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 35055057 - 35054983
Alignment:
Q  72 ttttagttctccaaactagtccctat-aaaatgcaaatagggactaaaagtgaataaataatttgtagggactaaa 146  Q
    ||||||||||||||| |||||||||| ||||||||| || ||||||||| |||||||||  |||||||| ||||||    
T  35055057 ttttagttctccaaaatagtccctataaaaatgcaattaaggactaaaaatgaataaat-ttttgtaggaactaaa 35054983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 17143142 - 17143179
Alignment:
Q  88 tagtccctataaaatgcaaatagggactaaaagtgaat 125  Q
    |||||||| |||||||||||||||||||||||||||||    
T  17143142 tagtccctctaaaatgcaaatagggactaaaagtgaat 17143179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 24292257 - 24292165
Alignment:
Q  22 gtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggact 115  Q
    ||||||||||| | || ||||||| |||   ||||| |||||||| ||||||||||| ||| ||| |||||||| |||||| ||||||||||||    
T  24292257 gtttgtaagaacagtccctattttaaaagatttttataaaaaatggatacttttagtcctcaaaa-tagtccctgtaaaatacaaatagggact 24292165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 16089764 - 16089900
Alignment:
Q  10 aaaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaata 109  Q
    ||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||  |||||||||| ||| ||| ||||||||||||||||||||||    
T  16089764 aaaaatattatagtttgtaagaatagtctctgtttttaaaactttttacaaaaaatgggtacttttagtcctctaaaatagtccctataaaatgcaaata 16089863  T
Q  110 gggactaaaagtgaataaataatttgtagggactaaa 146  Q
     |||||||||||||||||| |||||||| ||||||||    
T  16089864 tggactaaaagtgaataaaaaatttgtaaggactaaa 16089900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 15069998 - 15070134
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    ||||||||||||||||||| |||| |||| ||||| ||||| |||||||||||||| ||| ||||||| || |||| ||||| |||||||||| ||||||    
T  15069998 aaaatattgtagtttgtaataatagtctcgattttgaaaactttttacaaaaaatggatatttttagtccttcaaaatagtctctataaaatgtaaatag 15070097  T
Q  111 ggactaaaagtgaataaa-taatttgtagggactaaa 146  Q
    |||||||||||||||||| |  |||||||||||||||    
T  15070098 ggactaaaagtgaataaatttttttgtagggactaaa 15070134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 19343631 - 19343767
Alignment:
Q  10 aaaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaata 109  Q
    |||||||||||||||||||| |||| |   |||||| ||||| |||||||||||||  ||| ||||||| |||||||||||||| |||||||||||||||    
T  19343631 aaaaatattgtagtttgtaaaaatagttcatattttaaaaactttttacaaaaaatagataattttagtcctccaaactagtccttataaaatgcaaata 19343730  T
Q  110 gggactaaaagtgaataaataatttgtagggactaaa 146  Q
    ||||||||||||||||||||  |||| |||| |||||    
T  19343731 gggactaaaagtgaataaattttttgcagggcctaaa 19343767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 36235836 - 36235969
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    |||||| ||||||||||||| | || | ||||| ||||| ||||| |||||||||||| ||||| | ||||||| |||||| ||||||||||||||| ||    
T  36235836 aatattttagtttgtaagaacagtccccattttaaaaactttttataaaaaatgaatatttttattcctccaaaatagtccttataaaatgcaaataagg 36235935  T
Q  113 actaaaagtgaataaataatttgtagggactaaa 146  Q
    ||||||| |||||||| |||||||||||||||||    
T  36235936 actaaaaatgaataaaaaatttgtagggactaaa 36235969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 5459223 - 5459091
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    |||||| |||||| |||||||  || |||||||| |||  || ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||    
T  5459223 aatattatagtttataagaatg-tccctattttttaaattttctacaaaaaatgaatacttttattcctccaaaatagtccctataaaatgcaaataggg 5459125  T
Q  113 actaaaagtgaataaataatttgtagggactaaa 146  Q
    | ||||| |||||||| || ||||||||||||||    
T  5459124 attaaaaatgaataaaaaaattgtagggactaaa 5459091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 1298817 - 1298911
Alignment:
Q  53 ttttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaataaa--taatttgtagggactaaatt 148  Q
    ||||||||||||||||||||||||   ||| ||| |||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||||    
T  1298817 ttttacaaaaaatgaatactttta---ctctaaaatagtccctataaaatgcaaatagggactaaaagtgaataaattttttttgtagggactaaatt 1298911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 26724196 - 26724327
Alignment:
Q  16 attgtagtttgtaagaataatctctatttttaaaacattttacaaaaaa-tgaatacttttagttctccaaactagtccctataaaatgcaaatagggac 114  Q
    |||||| ||| |||||| | || ||||||| ||||| |||||||||||| || ||||||||||| ||||||| |||||| ||||||||| |||||| |||    
T  26724196 attgtaatttataagaacagtccctattttgaaaactttttacaaaaaaatggatacttttagtcctccaaaatagtccttataaaatgaaaatagagac 26724295  T
Q  115 taaaagtgaataaataatttgtagggactaaa 146  Q
    |||||||||||||||  ||| ||||| |||||    
T  26724296 taaaagtgaataaattttttataggggctaaa 26724327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 38948632 - 38948719
Alignment:
Q  40 tatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaataa 127  Q
    |||||| ||||| |||||||||||||| | ||||||||| | || || ||||||||||||||| ||||||||||| ||||||||||||    
T  38948632 tattttaaaaactttttacaaaaaatggacacttttagtccacccaaatagtccctataaaattcaaatagggaccaaaagtgaataa 38948719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 6502283 - 6502345
Alignment:
Q  47 aaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaata 109  Q
    ||||| ||||||||||| || ||||||||||| ||||||| |||||||||||||||| |||||    
T  6502283 aaaactttttacaaaaattggatacttttagtcctccaaaatagtccctataaaatgtaaata 6502345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 35270758 - 35270806
Alignment:
Q  17 ttgtagtttgtaagaataatctctatttttaaaacattttacaaaaaat 65  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||    
T  35270758 ttgtagtttgtaagaataatctctattttgaaaacttttaacaaaaaat 35270806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 38607378 - 38607494
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttac-aaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagg 111  Q
    ||||||||||||| | |||||| ||  |||||| ||||| | |||| |||||||  ||| |||||||  | |||| ||||| ||||||||||||||| ||    
T  38607378 aatattgtagttttttagaatagtccttattttgaaaacttgttaccaaaaaatatatatttttagtctttcaaaatagtctctataaaatgcaaatcgg 38607477  T
Q  112 gactaaaagtgaataaa 128  Q
    |||||||||| ||||||    
T  38607478 gactaaaagtaaataaa 38607494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 30403647 - 30403539
Alignment:
Q  20 tagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtcc-ctataaaatgcaaatagggactaaa 118  Q
    ||||||||||||||| ||  |||||| ||||| ||||||||||||||   || |||||| ||||||| ||||||  ||||| ||| |||||   ||||||    
T  30403647 tagtttgtaagaatagtcattattttaaaaactttttacaaaaaatgggcacatttagtactccaaaatagtcctttataacatgtaaatataaactaaa 30403548  T
Q  119 agtgaataa 127  Q
    |||||||||    
T  30403547 agtgaataa 30403539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 14820501 - 14820414
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaa 100  Q
    |||| |||||||||||| |||||||  |||||| ||||| ||||| ||||||||   ||||||||| || |||| |||||| ||||||    
T  14820501 aataatgtagtttgtaaaaataatccatattttaaaaactttttataaaaaatggtcacttttagtccttcaaaatagtccttataaa 14820414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 26188843 - 26188812
Alignment:
Q  14 atattgtagtttgtaagaataatctctatttt 45  Q
    ||||||||||||||||||||||||||||||||    
T  26188843 atattgtagtttgtaagaataatctctatttt 26188812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 34005709 - 34005654
Alignment:
Q  54 tttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaata 109  Q
    ||||||||||||| ||| ||||||| ||  ||| ||||||||||||||||||||||    
T  34005709 tttacaaaaaatgtatatttttagtcctttaaaatagtccctataaaatgcaaata 34005654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 34784027 - 34784121
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaat 108  Q
    ||||||||| ||| | |||||| ||| |||||| ||||| ||||  ||||||| |||||||||||| || |||| |||| |||||||||| |||||    
T  34784027 aatattgtaatttattagaatattctttattttgaaaactttttctaaaaaat-aatacttttagtccttcaaaatagttcctataaaatacaaat 34784121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 39058540 - 39058478
Alignment:
Q  16 attgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagt 78  Q
    ||||||||||||||||||| ||  |||||| ||||| ||||||||| |||| | |||||||||    
T  39058540 attgtagtttgtaagaatagtccttattttgaaaactttttacaaacaatggacacttttagt 39058478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 5159566 - 5159469
Alignment:
Q  10 aaaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaa 107  Q
    |||| |||| |||||| ||| |||| ||  |||||| ||||| ||| |||||||||| |||||| |||| ||||||| || |  ||||||||||||||    
T  5159566 aaaattattatagtttctaaaaatagtccttattttaaaaacttttaacaaaaaatggatacttgtagtcctccaaaataatatctataaaatgcaaa 5159469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 39057200 - 39057143
Alignment:
Q  81 tccaaactagtccctataaaatgcaaatagggactaaaagtgaataaataatttgtag 138  Q
    |||||| ||||||| |||||||| ||||| ||| |||||||||||||||  |||||||    
T  39057200 tccaaaatagtcccaataaaatgtaaataaggattaaaagtgaataaattttttgtag 39057143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 44446941 - 44446805
Alignment:
Q  10 aaaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaata 109  Q
    ||||||||| ||||||||||||||| ||||| |||| ||||| ||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||    
T  44446941 aaaaatattatagtttgtaagaatagtctctgttttgaaaactttttacaaaaaatgtgtacttttagtcctccaaaatagtccctataaaatgcaaata 44446842  T
Q  110 gggactaaaagtgaataaataatttgtagggactaaa 146  Q
    ||||||||||||||||||| | |||||| | ||||||    
T  44446841 gggactaaaagtgaataaaaattttgtaagaactaaa 44446805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 28769592 - 28769459
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    |||||||||||||||||||||| ||| |||||| ||||| ||||||| |||||  ||||||||| | ||||||| |||||| ||||||||||||||| ||    
T  28769592 aatattgtagtttgtaagaatagtctttattttaaaaactttttacagaaaattgatacttttaatcctccaaaatagtccttataaaatgcaaataagg 28769493  T
Q  113 actaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||||||||||||||  ||| |||||| ||||    
T  28769492 actaaaagtgaataaattttttatagggattaaa 28769459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 50334723 - 50334584
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaac--attttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaat 108  Q
    ||||||||||||||||||| | || |  ||||||| || ||   |||||||||||||| ||| ||||||| ||| ||| |||||||||||||||||||||    
T  50334723 aaaatattgtagtttgtaaaattagttcctattttgaatactttttttacaaaaaatggatatttttagtcctctaaaatagtccctataaaatgcaaat 50334624  T
Q  109 agggactaaaagtgaataaataatttgtagggactaaatt 148  Q
    ||| |||||||||||||||||  |||||||||||||||||    
T  50334623 aggaactaaaagtgaataaattttttgtagggactaaatt 50334584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 34359411 - 34359546
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    |||||||| |||||||||| |||  || || |||| ||||| |||||||||||||| ||| ||||||| || ||||  ||||||||||||||| ||||||    
T  34359411 aaaatattatagtttgtaaaaatggtccctgttttgaaaactttttacaaaaaatggataattttagtccttcaaaaaagtccctataaaatgtaaatag 34359510  T
Q  111 ggactaaaagtgaataaataatttgtagggactaaa 146  Q
    | | ||||||||||||||   |||||||||||||||    
T  34359511 gaattaaaagtgaataaaatttttgtagggactaaa 34359546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 20314970 - 20315101
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    ||||||| | ||||||| |||| |||||||||| ||||  |||||||||||||  || |||  ||| ||||||| | |||||||||||||| ||||||||    
T  20314970 aatattgaattttgtaataatagtctctattttgaaaattttttacaaaaaatttatgctt--agtactccaaaattgtccctataaaatgtaaataggg 20315067  T
Q  113 actaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||||||||||||||  ||| ||| |||||||    
T  20315068 actaaaagtgaataaattttttatagagactaaa 20315101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 38673370 - 38673254
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatga-atacttttagttctccaaactagtccctataaaatgcaaatagg 111  Q
    ||||||||| |||||||||||| |  || ||| |||||| ||||||||||||  | ||||||||||| ||||||| ||||||| |||||||  || |||     
T  38673370 aatattgtaatttgtaagaatatttactgtttgtaaaaccttttacaaaaaaatagatacttttagtcctccaaaatagtccccataaaatataagtaga 38673271  T
Q  112 gactaaaagtgaataaa 128  Q
    |||||||||||||||||    
T  38673270 gactaaaagtgaataaa 38673254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 44648123 - 44648235
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    |||||||||||||||||| |||  |  |||||| ||||| ||||||||||  |  ||||||||||| ||| ||| ||||||||||||| | ||||||| |    
T  44648123 aatattgtagtttgtaagtatagaccttattttgaaaactttttacaaaa--ttgatacttttagtcctcaaaaatagtccctataaagttcaaatagag 44648220  T
Q  113 actaaaagtgaataa 127  Q
    |||||||||||||||    
T  44648221 actaaaagtgaataa 44648235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 39340851 - 39340965
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    ||||||||||||||||||| |||| || |||||||  ||   ||||||||||||||  |||||||||| ||||||| |||||  ||||||||| ||||||    
T  39340851 aaaatattgtagtttgtaaaaatagtccctatttt--aatttttttacaaaaaatgtgtacttttagtcctccaaaatagtcattataaaatgaaaatag 39340948  T
Q  111 ggactaaaagtgaataa 127  Q
      | |||||||||||||    
T  39340949 aaagtaaaagtgaataa 39340965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 146
Target Start/End: Original strand, 52423102 - 52423210
Alignment:
Q  39 ctatttttaaaacattttacaaaaaatgaatactttt-agttctccaaactagtccctataaaatgcaaatagggactaaaagtgaataaataatttgta 137  Q
    ||||||| ||||| |||||  ||||||| |||||||| ||| ||||||  ||| ||||||||||||||||||||| |||||||| |||||||  ||| ||    
T  52423102 ctattttgaaaactttttattaaaaatggatactttttagtcctccaatatagcccctataaaatgcaaataggggctaaaagtaaataaattttttata 52423201  T
Q  138 gggactaaa 146  Q
    |||| ||||    
T  52423202 gggattaaa 52423210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 17268915 - 17269020
Alignment:
Q  15 tattgtagtttgtaagaataatctctatttttaaaacatttta-caaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggga 113  Q
    ||||||||||||||| |||| ||| ||||||  ||||||||||  |||||||||||||||||| ||||  ||| || ||| ||||||||| |||||| ||    
T  17268915 tattgtagtttgtaaaaatagtctatattttataaacattttataaaaaaatgaatacttttaattctaaaaaataatccatataaaatgaaaatagaga 17269014  T
Q  114 ctaaaa 119  Q
     |||||    
T  17269015 ttaaaa 17269020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 41544605 - 41544534
Alignment:
Q  59 aaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaataaata 130  Q
    |||||||| | ||||||| |  |||||| |||| ||| ||||||||| ||||||||||||||||||||||||    
T  41544605 aaaaaatggacacttttaatcttccaaaatagttcctgtaaaatgcatatagggactaaaagtgaataaata 41544534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 45743817 - 45743891
Alignment:
Q  18 tgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtc 92  Q
    ||||||||||||||||  || ||||||| ||||| |||||||||||||| | |||||| || ||||||| |||||    
T  45743817 tgtagtttgtaagaatggtccctattttaaaaactttttacaaaaaatggacactttttgtcctccaaaatagtc 45743891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 2382915 - 2382870
Alignment:
Q  31 aataatctctatttttaaaacattttacaaaaaatgaatactttta 76  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||||    
T  2382915 aatattctctattttgaaaactttttacaaaaaatgaatactttta 2382870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 20336927 - 20336992
Alignment:
Q  81 tccaaactagtccctataaaatgcaaatagggactaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||| | |||||||||||||  ||||||| |||||||||||||||||  ||| ||||| |||||    
T  20336927 tccaaaattgtccctataaaatataaataggaactaaaagtgaataaattttttataggggctaaa 20336992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 16876466 - 16876518
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaat 65  Q
    |||||||||||||||||||||| || ||||||| |||| |  |||||||||||    
T  16876466 aatattgtagtttgtaagaatagtccctattttaaaaaaaaattacaaaaaat 16876518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 17957109 - 17957246
Alignment:
Q  10 aaaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaata 109  Q
    ||||||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||| |||| |||||| ||||||| ||||||||||||||| ||||||    
T  17957109 aaaaatattatagtttgtaagaatagtctctgttttgaaaactttttacaaaaaatggatacctttagtcctccaaaatagtccctataaaatacaaata 17957208  T
Q  110 gggactaaaagtgaataaataatttgtagggactaaat 147  Q
    |||||||||| |||||||| ||||| || |||||||||    
T  17957209 gggactaaaaatgaataaaaaatttataaggactaaat 17957246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 17158114 - 17157991
Alignment:
Q  23 tttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtg 122  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||| ||| ||||| |||||| ||||||||||||||||||||||    
T  17158114 tttgtaagaataatctctattttgaaaactttttacaaaaaatggatacttgtagtcctcaaaagtagtctctataagatgcaaatagggactaaaagtg 17158015  T
Q  123 aataaataatttgtagggactaaa 146  Q
    ||||| |  |||||||||||||||    
T  17158014 aataatttttttgtagggactaaa 17157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 6197898 - 6198025
Alignment:
Q  19 gtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaa 118  Q
    |||||||||||||||| |||||||||| ||||| ||||| |||||||| | ||||||| | ||||||| |||||||||||||||| ||||| |||| |||    
T  6197898 gtagtttgtaagaatagtctctattttgaaaactttttagaaaaaatggacacttttattcctccaaaatagtccctataaaatgtaaataaggaccaaa 6197997  T
Q  119 agtgaataaataatttgtagggactaaa 146  Q
    ||||||||||   || ||||||||||||    
T  6197998 agtgaataaacttttcgtagggactaaa 6198025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 4254627 - 4254508
Alignment:
Q  9 caaaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaat 108  Q
    |||||||| |||||||||||| ||||||| ||||||| |||||  ||||||||||||| | |||||||   ||||||| |||||| | ||||||| ||||    
T  4254627 caaaaatactgtagtttgtaaaaataatccctattttaaaaactgtttacaaaaaatggacacttttaaccctccaaaatagtccttgtaaaatgaaaat 4254528  T
Q  109 agggactaaaagtgaataaa 128  Q
    | ||| ||||||| ||||||    
T  4254527 aaggattaaaagtaaataaa 4254508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 10313395 - 10313495
Alignment:
Q  19 gtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaa 118  Q
    |||||||||||||||| || |||| || |||| |||| | | |||||  | ||||||||| ||||||| |||||||||||||||||||||| ||||||||    
T  10313395 gtagtttgtaagaatagtccctatattgaaaatatttaaaagaaaatatacacttttagtcctccaaaatagtccctataaaatgcaaataaggactaaa 10313494  T
Q  119 a 119  Q
    |    
T  10313495 a 10313495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 24672352 - 24672483
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    ||||||||| ||||||| |||| |||||||||| |||||  || | ||||||   ||| ||||||| ||||||| |||||| | ||| ||||||||||||    
T  24672352 aatattgtaatttgtaataatagtctctattttaaaaac--ttaaaaaaaaaaagatatttttagtcctccaaaatagtccatttaagatgcaaataggg 24672449  T
Q  113 actaaaagtgaataaataatttgtagggactaaa 146  Q
    || || ||||||||||   |||||||||||||||    
T  24672450 accaatagtgaataaaatttttgtagggactaaa 24672483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 4409058 - 4408948
Alignment:
Q  26 gtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaat 125  Q
    ||||||||| |||||||||| ||||| |||||||||||||          |||| |||||| |||||||||||||||| ||||||| |||||||||||||    
T  4409058 gtaagaatagtctctattttgaaaactttttacaaaaaat----------agttttccaaaatagtccctataaaatgtaaataggaactaaaagtgaat 4408969  T
Q  126 aaataatttgtagggactaaa 146  Q
    ||| | |||||| ||| ||||    
T  4408968 aaaaattttgtaaggattaaa 4408948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 34187125 - 34187205
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtcc 93  Q
    |||||||||||| ||||||||| |||||||||| ||||| | ||| ||||||||||||||||| || || |||| ||||||    
T  34187125 aatattgtagttcgtaagaatagtctctattttgaaaacttgttaaaaaaaatgaatacttttggtccttcaaaatagtcc 34187205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 30465243 - 30465127
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    ||||||| |||||||||||||| || ||||||| ||||  ||| ||||||||   ||| ||||||| ||| ||| ||||  |||||| ||| || |||||    
T  30465243 aatattgaagtttgtaagaatagtccctattttaaaaaattttgacaaaaaaattataattttagtcctcgaaaatagtgtctataagatgtaagtaggg 30465144  T
Q  113 actaaaagtgaataaat 129  Q
    ||||| |||||||||||    
T  30465143 actaagagtgaataaat 30465127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 12611904 - 12611994
Alignment:
Q  42 tttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaataaataatt 133  Q
    |||||||| | ||||||||||||| |||| |||| || | ||||| ||||| |||||||||| ||||| | |||||||||||||||| ||||    
T  12611904 tttttaaatctttttacaaaaaattaatattttttgtccaccaaaatagtcactataaaatgaaaata-gaactaaaagtgaataaaaaatt 12611994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 10516655 - 10516584
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaa 85  Q
    |||||||||||||||||||||| || ||| ||| | ||| |||||||||| ||| ||||||||||| ||||||    
T  10516655 aatattgtagtttgtaagaatagtcccta-tttaataactttttacaaaatatggatacttttagtcctccaa 10516584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 5644753 - 5644646
Alignment:
Q  39 ctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaataaataatttgtag 138  Q
    ||||||| ||||| ||| ||||||||   ||| ||||||| ||||||| ||||  |||||| ||| || |||||||||| |||||||||||  ||| |||    
T  5644753 ctattttaaaaacttttgacaaaaaaattataattttagtcctccaaaatagtgtctataagatgtaagtagggactaagagtgaataaatgttttatag 5644654  T
Q  139 ggactaaa 146  Q
     |||||||    
T  5644653 agactaaa 5644646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 2538638 - 2538695
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatac 71  Q
    |||||| |||||||||||||| ||| ||| |||||||| | ||||||||||||||||||    
T  2538638 aatattatagtttgtaagaatgatcccta-ttttaaaaaaatttacaaaaaatgaatac 2538695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 12338950 - 12339008
Alignment:
Q  88 tagtccctataaaatgcaaatagggactaaaagtgaataaataatttgtagggactaaa 146  Q
    ||||| ||||||||| |||| |  ||||||||||||||||| ||||||||| |||||||    
T  12338950 tagtctctataaaatacaaacaaagactaaaagtgaataaaaaatttgtagcgactaaa 12339008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 20132133 - 20132270
Alignment:
Q  10 aaaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaata 109  Q
    ||||||||| || |||||||||||| ||||| |||| ||||| |||||||||||||| |||| |||||| ||||||| ||||||||||||||| ||||||    
T  20132133 aaaaatattataatttgtaagaatagtctctgttttgaaaactttttacaaaaaatggatacctttagtcctccaaaatagtccctataaaatacaaata 20132232  T
Q  110 gggactaaaagtgaataaataatttgtagggactaaat 147  Q
    |||||||||| |||||||| |||||||| | |||||||    
T  20132233 gggactaaaaatgaataaaaaatttgtaagaactaaat 20132270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 28098618 - 28098727
Alignment:
Q  19 gtagtttgtaagaataatctctatttttaaaacatttt-acaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaa 117  Q
    ||||||||||  |||||||  |||||| ||||| |||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  28098618 gtagtttgtagaaataatccatattttgaaaacttttttacaaaaaatgaatatttttagtcctccaaaatagtccctataaaatgcaaatagggactaa 28098717  T
Q  118 aagtgaataa 127  Q
    |||| |||||    
T  28098718 aagtaaataa 28098727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 13009451 - 13009317
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaa-tgaatacttttagttctccaaactagtccctataaaatgcaaatagg 111  Q
    |||||||||||||||||||||| ||  |||||| | ||| |||||||||||| |||||||||||||| ||||||| |||||||| ||||||| ||||||     
T  13009451 aatattgtagtttgtaagaatagtcgttattttaataactttttacaaaaaagtgaatacttttagtcctccaaattagtccctgtaaaatgtaaataga 13009352  T
Q  112 gactaaaagtgaataaataatttgtagggactaaa 146  Q
    || |||  |||||||||   |||||||||||||||    
T  13009351 gattaattgtgaataaaacttttgtagggactaaa 13009317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 11297838 - 11297951
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttac-aaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaata 109  Q
    |||||||| |||||||||| |||| || ||||||| ||||| || ||| |||||||| ||||||||||| ||||||| |||||||| |||||| ||||||    
T  11297838 aaaatattttagtttgtaaaaatagtccctattttgaaaactttatactaaaaaatggatacttttagtcctccaaaatagtccctttaaaatacaaata 11297937  T
Q  110 gggactaaaagtga 123  Q
    ||||| ||||||||    
T  11297938 gggacaaaaagtga 11297951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 34471348 - 34471421
Alignment:
Q  53 ttttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaata 126  Q
    |||||||||||||| |||| |||||| || |||| ||||| |||||||||||||||||||||||||||||||||    
T  34471348 ttttacaaaaaatgtatacctttagtccttcaaaatagtctctataaaatgcaaatagggactaaaagtgaata 34471421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 27567752 - 27567617
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatga--atacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    |||||||||||||||||||||| ||  |||||| ||||| |||| |||||||  |  ||| ||||||| ||||||| |||||| |||||||||||||||     
T  27567752 aatattgtagtttgtaagaatagtccttattttgaaaactttttgcaaaaaaaaagtatatttttagtcctccaaaatagtccttataaaatgcaaatat 27567653  T
Q  111 ggactaaaagtgaataaataatttgtagggactaaa 146  Q
    ||| |||||||||| |||   ||| |||||||||||    
T  27567652 ggattaaaagtgaagaaaacttttttagggactaaa 27567617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 48696447 - 48696532
Alignment:
Q  39 ctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaat 125  Q
    ||||||| ||||| ||||| |||| | ||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  48696447 ctattttaaaaactttttagaaaaca-gaatatttttagtcctccaaaatagtctctataaaatgcaaatagggactaaaagtgaat 48696532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 30851722 - 30851589
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    ||||||| |||||||||||||| || ||||||| ||||  ||| ||||||||   ||| ||||||| ||| ||| ||||  |||||| ||| || |||||    
T  30851722 aatattgaagtttgtaagaatagtccctattttaaaaaattttgacaaaaaaattataattttagtcctcgaaaatagtgtctataagatgtaagtaggg 30851623  T
Q  113 actaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||||||||||||||  ||| ||| |||||||    
T  30851622 actaaaagtgaataaatgttttatagagactaaa 30851589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 33991899 - 33992019
Alignment:
Q  15 tattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttag-ttctccaaactagtccctataaaatgcaaataggga 113  Q
    ||||||||||| |||||||  ||| |||||| ||    |||||||||||||||||| ||||   ||||||||| || ||| |||||||| ||||||||||    
T  33991899 tattgtagtttttaagaatggtctatattttgaattttttttacaaaaaatgaatatttttttattctccaaaatattccttataaaatacaaataggga 33991998  T
Q  114 ctaaaagtgaataaataattt 134  Q
    ||||| ||||||||| |||||    
T  33991999 ctaaacgtgaataaaaaattt 33992019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 39596786 - 39596738
Alignment:
Q  53 ttttacaaaaaatgaatacttttagttctccaaactagtccctataaaa 101  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  39596786 ttttacaaaaaatgaatacttttagttctccaaaatagtctctataaaa 39596738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 22485182 - 22485125
Alignment:
Q  88 tagtccctataaaatgcaaatagggactaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||| ||||||||||||||||||||||||||| |||||| |||||||| ||||||||    
T  22485182 tagtccttataaaatgcaaatagggactaaaagtaaataaa-aatttgtacggactaaa 22485125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 25067734 - 25067828
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaa 107  Q
    |||||| |||||||||| |||| ||  |||||| |||||  ||||||||||||| |||||||||||  |||||| ||||| ||| ||||||||||    
T  25067734 aatattatagtttgtaaaaatagtccttattttgaaaactgtttacaaaaaatggatacttttagtcttccaaaatagtctctagaaaatgcaaa 25067828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 25411633 - 25411518
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    |||||||||||||||||||||||| ||  |||||| || || ||||   ||||||| ||| ||||| ||||| ||| |||| ||||||||||  ||| ||    
T  25411633 aaaatattgtagtttgtaagaatagtcaatattttaaatacttttttacaaaaatggatatttttaattctctaaaatagttcctataaaatataaacag 25411534  T
Q  111 ggactaaaagtgaata 126  Q
     ||||||||| |||||    
T  25411533 tgactaaaagagaata 25411518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 12925288 - 12925389
Alignment:
Q  5 tctccaaaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgc 104  Q
    |||||||||| ||| || ||| ||| |||||||  |||||||||||| |||||||||||||  ||| ||||||| ||||||| || ||| ||||||| ||    
T  12925288 tctccaaaaa-attataatttttaataataatccttatttttaaaactttttacaaaaaatagatatttttagtcctccaaaataatccttataaaaagc 12925386  T
Q  105 aaa 107  Q
    |||    
T  12925387 aaa 12925389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 20986008 - 20986141
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaa--tgaatacttttagttctccaaactagtccctataaaatgcaaat 108  Q
    |||||||||||||||| ||||||| || ||||||| ||||| ||||||||||||  |  ||||||||||| ||||||| |||||||||||||||||||||    
T  20986008 aaaatattgtagtttgcaagaatagtccctattttgaaaactttttacaaaaaaaatagatacttttagtcctccaaaatagtccctataaaatgcaaat 20986107  T
Q  109 agggactaaaagtgaataaataatttgtagggac 142  Q
    | ||||||||||| |||||||  |||||||||||    
T  20986108 aaggactaaaagtaaataaattttttgtagggac 20986141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 33753046 - 33752913
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    |||||||||||||||||||||  || ||||||| |||   | |||||||||||||| ||||||| ||||||||| |||||||||||||||| ||||| ||    
T  33753046 aatattgtagtttgtaagaatggtcactattttgaaactttattacaaaaaatgaacacttttacttctccaaaatagtccctataaaatgtaaataagg 33752947  T
Q  113 actaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||||||||||||| || ||||||||| ||||    
T  33752946 actaaaagtgaataaaaaaattgtagggattaaa 33752913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 29307642 - 29307555
Alignment:
Q  59 aaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||||| |||  |||||| ||||||| |||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  29307642 aaaaaatggatatatttagtcctccaaaatagtccctataaaatgcaaatagggactaagagttaataaaaaatttgtagggactaaa 29307555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 13392890 - 13393006
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacatttt-acaaaaaa-tgaatacttttagttctccaaactagtccctataaaatgcaaat 108  Q
    ||||||||||||||||||| |||| || ||||||| ||||| |||| |||||||| || ||| ||||||||||||||| |||| | |||||||| || ||    
T  13392890 aaaatattgtagtttgtaaaaatagtccctattttaaaaacttttttacaaaaaaatggataattttagttctccaaaatagttcatataaaatacatat 13392989  T
Q  109 agggactaaaagtgaat 125  Q
    |||||||||||||||||    
T  13392990 agggactaaaagtgaat 13393006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 16545497 - 16545363
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    ||||||||||||||| ||| |||  || ||||||| ||||| || ||||||||||| ||| ||||||| ||||||| |||||| || ||||||||||| |    
T  16545497 aaaatattgtagttt-taaaaatggtccctattttgaaaactttatacaaaaaatggatatttttagtcctccaaaatagtccttacaaaatgcaaattg 16545399  T
Q  111 ggactaaaagtgaataaataatttgtagggactaaa 146  Q
    | | |||||||||||||||  ||||||  |||||||    
T  16545398 gtagtaaaagtgaataaattttttgtacagactaaa 16545363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 37470983 - 37470903
Alignment:
Q  22 gtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaat 102  Q
    ||||||||||||| |  ||||||  ||||| |||||||||||||| || |||||||| ||||||| ||||| |||||||||    
T  37470983 gtttgtaagaatagttcctatttgaaaaactttttacaaaaaatggatgcttttagtcctccaaaatagtctctataaaat 37470903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 29102970 - 29103057
Alignment:
Q  59 aaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||||  ||| ||||||| ||||||| ||||  |||||||| ||||||| |||||||||||||||||||  |||||| ||| ||||    
T  29102970 aaaaaatagatatttttagtcctccaaaatagtatctataaaaagcaaataaggactaaaagtgaataaattttttgtatggattaaa 29103057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 23230894 - 23230836
Alignment:
Q  88 tagtccctataaaatgcaaatagggactaaaagtgaataaataatttgtagggactaaa 146  Q
    |||||| ||||||||| | |||| ||||||||||||||||| | |||||||||||||||    
T  23230894 tagtccttataaaatgtatatagtgactaaaagtgaataaaaattttgtagggactaaa 23230836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 35218150 - 35218215
Alignment:
Q  80 ctccaaactagtccctataaaatgcaaatagggactaaaagtgaataaataatttgtagggactaa 145  Q
    ||||||| |||||||||||||||| |||||  |||||||||| |||||| | |||||||| |||||    
T  35218150 ctccaaaatagtccctataaaatgtaaataaagactaaaagtaaataaaaattttgtaggaactaa 35218215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 35954306 - 35954440
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaat-gaatacttttagttctccaaactagtccctataaaatgcaaatagg 111  Q
    |||||||||||||||||||||| |||||||| | ||| | |||||  |||||| ||| ||||||||| ||||||| ||| |||||||||||  || ||||    
T  35954306 aatattgtagtttgtaagaatagtctctattataaaatctttttaataaaaattgaaaacttttagtcctccaaaatagcccctataaaatataactagg 35954405  T
Q  112 gactaaaagtgaataaataatttgtagggactaaa 146  Q
    ||||||||||||||||| || ||||||||||||||    
T  35954406 gactaaaagtgaataaaaaaattgtagggactaaa 35954440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 34904093 - 34904198
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||| ||||||||||| ||  ||| |||||| | ||||||||||||||||    
T  34904093 aatattgtagtttgtaagaataatccctattttgaaaactttttacaaagaatggatacttttagtcctataaaatagtccttttaaaatgcaaataggg 34904192  T
Q  113 actaaa 118  Q
    ||||||    
T  34904193 actaaa 34904198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 8794655 - 8794770
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    ||||||||| || ||||||||| || ||||||| ||||| |||||||||||||| | | |||||||  |||||| |||  ||||||||||||||||||||    
T  8794655 aatattgtaattcgtaagaatagtccctattttaaaaactttttacaaaaaatggacatttttagtcatccaaaatagctcctataaaatgcaaataggg 8794754  T
Q  113 actaaaagtgaataaa 128  Q
    ||||||||||||||||    
T  8794755 actaaaagtgaataaa 8794770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 10077686 - 10077808
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaa--tgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    ||||||||||||||||| |||| || ||||||| ||||| ||||||||||||  || ||| ||||||| ||||||| ||||||| ||||||| ||||||     
T  10077686 aatattgtagtttgtaataatagtccctattttgaaaactttttacaaaaaaaatggatatttttagtcctccaaaatagtcccaataaaatacaaatat 10077785  T
Q  111 ggactaaaagtgaataaataatt 133  Q
    |||||||||||||||||| ||||    
T  10077786 ggactaaaagtgaataaaaaatt 10077808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 39293198 - 39293064
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    ||||||||||| ||||||| |||| |  ||||||| ||||||||||  |||||||| ||| ||||| | ||||||| |||||| ||||||||| ||||||    
T  39293198 aaaatattgtaatttgtaataatagttcctattttaaaaacattttt-aaaaaatggatatttttattcctccaaaatagtccatataaaatgaaaatag 39293100  T
Q  111 ggactaaaagtgaataaataatttgtagggactaaa 146  Q
    ||||||||||||||||| |  |||||||||||||||    
T  39293099 ggactaaaagtgaataatttttttgtagggactaaa 39293064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 30641112 - 30640995
Alignment:
Q  12 aaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaa-tgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    ||||||| |||||||||| | || || ||||||| ||||| || ||||||||| || |||||||| || ||||||| |||||||| ||||||||||||||    
T  30641112 aaatattttagtttgtaaaagtagtccctattttgaaaactttatacaaaaaaatggatacttttggtcctccaaaatagtccctttaaaatgcaaatag 30641013  T
Q  111 ggactaaaagtgaataaa 128  Q
    ||||||||||||||||||    
T  30641012 ggactaaaagtgaataaa 30640995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 6191172 - 6191285
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    ||||||||| |||||||||||| ||  |||||| ||||| ||||||||||||||||||  |||||||||||||| ||||  ||||||||| |||||| |     
T  6191172 aatattgtactttgtaagaatagtccgtattttgaaaactttttacaaaaaatgaatatgtttagttctccaaaatagt-tctataaaatacaaataaga 6191270  T
Q  113 actaaaagtgaataa 127  Q
    |||||||||||||||    
T  6191271 actaaaagtgaataa 6191285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 24490638 - 24490520
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacatttt----acaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaat 108  Q
    ||||||||||||||||||||||||| ||||||| |     ||||    | |||||||| ||||||||||| ||| ||| ||||| |||||||||||||||    
T  24490638 aatattgtagtttgtaagaataatccctattttgattttttttttttaataaaaaatggatacttttagtcctctaaaatagtctctataaaatgcaaat 24490539  T
Q  109 agggactaaaagtgaataa 127  Q
    |||||||||||||||||||    
T  24490538 agggactaaaagtgaataa 24490520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 31994809 - 31994684
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    ||||||||| |||||||||||| || | ||||| ||||| ||||  |||||||| | |||| || | ||||||| ||||||||||||||||||||| |||    
T  31994809 aatattgtaatttgtaagaatagtcccaattttgaaaactttttttaaaaaatggacacttgtaatcctccaaaatagtccctataaaatgcaaattggg 31994710  T
Q  113 actaaaagtgaataaataatttgtag 138  Q
    | ||||| |||||||||  |||||||    
T  31994709 attaaaaatgaataaattttttgtag 31994684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 855648 - 855752
Alignment:
Q  14 atattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttct-----ccaaactagtccctataaaatgcaaat 108  Q
    ||||||||||||||| ||||| ||  |||||| ||||| |||||||||||||||||| ||||||| ||     ||||| |||||||||||||||||||||    
T  855648 atattgtagtttgtaggaatagtccatattttgaaaactttttacaaaaaatgaatatttttagtcctccagaccaaaatagtccctataaaatgcaaat 855747  T
Q  109 aggga 113  Q
    |||||    
T  855748 aggga 855752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 29242646 - 29242513
Alignment:
Q  14 atattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaacta---gtccctataaaatgcaaatag 110  Q
    ||||| ||||||||||||||| || ||||||| |   | |||||||||||||  ||||||||||| | ||| | ||   |||||||||||||||||||||    
T  29242646 atattatagtttgtaagaatagtccctattttgac--ctttttacaaaaaatcgatacttttagtcccccacaataatagtccctataaaatgcaaatag 29242549  T
Q  111 ggactaaaagtgaataaataatttgtagggactaaa 146  Q
    || |||||||||||||| |  |||||| ||||||||    
T  29242548 gggctaaaagtgaataatttttttgtaaggactaaa 29242513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 27694574 - 27694475
Alignment:
Q  39 ctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaataaataatttgtag 138  Q
    ||||||| ||||| |||||||||||||  ||| ||||||| || | || || |||||||||||||  |||||||| |||||||||||||||  |||||||    
T  27694574 ctattttaaaaactttttacaaaaaatagataattttagtccttctaaataatccctataaaatgtgaatagggattaaaagtgaataaattttttgtag 27694475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 434607 - 434511
Alignment:
Q  12 aaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaat 108  Q
    |||||||  |||||||||||||| ||  | |||| ||||| ||||  |||||||| ||| |||| || ||||||| |||| ||||||||||||||||    
T  434607 aaatatttaagtttgtaagaatagtccatcttttcaaaactttttctaaaaaatggatatttttcgtcctccaaaatagttcctataaaatgcaaat 434511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 16999 - 16894
Alignment:
Q  23 tttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtg 122  Q
    |||||||||||| || ||||||| ||||| |||||| ||||||| |||| |||||| ||| ||| ||||||||||||||| |||||||||||||||||||    
T  16999 tttgtaagaatagtccctattttgaaaacgttttactaaaaatgtatacctttagtcctctaaaatagtccctataaaatacaaatagggactaaaagtg 16900  T
Q  123 aataaa 128  Q
    ||||||    
T  16899 aataaa 16894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 152256 - 152141
Alignment:
Q  13 aatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaataggg 112  Q
    |||||||||| ||||||||||| || ||||||||||||| | || ||||||||||||| |||||||  | |||| ||||| |||||||||||||||| ||    
T  152256 aatattgtagattgtaagaatagtccctatttttaaaacttcttgcaaaaaatgaatatttttagtctttcaaaatagtctctataaaatgcaaataagg 152157  T
Q  113 actaaaagtgaataaa 128  Q
    ||||||||||| ||||    
T  152156 actaaaagtgagtaaa 152141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 253833 - 253697
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatag 110  Q
    |||||||| ||||||||||| ||| |||||||||| |||   |||||||||||||| ||||||||| | ||||||| |||||||||||||||||| ||||    
T  253833 aaaatattatagtttgtaaggatagtctctatttt-aaacttttttacaaaaaatggatacttttaatcctccaaaatagtccctataaaatgcagatag 253735  T
Q  111 ggactaaaagtgaataaataatttgtagggactaaatt 148  Q
     || ||||| ||||||| |  ||||||| |||||||||    
T  253734 agattaaaaatgaataatttttttgtagagactaaatt 253697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 3352 - 3418
Alignment:
Q  59 aaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaat 125  Q
    |||||||| ||||||||||| ||||||| | |||||| ||||| |||||||||||||||||||||||    
T  3352 aaaaaatggatacttttagtcctccaaaattgtccctctaaaacgcaaatagggactaaaagtgaat 3418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 48509 - 48396
Alignment:
Q  16 attgtagtttgtaagaataatctctatttttaaaacattttacaaaaaa--tgaatacttttagttctccaaactagtccctataaaatgcaaataggga 113  Q
    |||||||||| |||||| | || || |||| ||||| ||||||||||||  || |||||||||||  |||||| ||||| |||||||||| ||||| |||    
T  48509 attgtagtttataagaacagtccctcttttgaaaactttttacaaaaaaaatggatacttttagtcatccaaaatagtctctataaaatgaaaatatgga 48410  T
Q  114 ctaaaagtgaataa 127  Q
    ||||||||| ||||    
T  48409 ctaaaagtggataa 48396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1911 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 113 - 179
Alignment:
Q  59 aaaaaatgaatacttttagttctccaaactagtccctataaaatgcaaatagggactaaaagtgaat 125  Q
    |||||||| ||||||||||| ||||||  |||||||| ||||||| |||||| ||||||||||||||    
T  113 aaaaaatggatacttttagtcctccaagatagtccctctaaaatgtaaatagagactaaaagtgaat 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 5553 - 5440
Alignment:
Q  11 aaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaa-tgaatacttttagttctccaaactagtccctataaaatgcaaata 109  Q
    |||||||| |||||||||| | || || ||||||| ||||| || ||||||||| || |||||||     ||||||| ||||||||  ||||||||||||    
T  5553 aaaatattttagtttgtaaaagtagtccctattttgaaaactttatacaaaaaaatggatacttt-----ctccaaaatagtcccttgaaaatgcaaata 5459  T
Q  110 gggactaaaagtgaataaa 128  Q
    |||||||||| ||||||||    
T  5458 gggactaaaaatgaataaa 5440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 7495 - 7458
Alignment:
Q  97 taaaatgcaaatagggactaaaagtgaataaataattt 134  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  7495 taaaatgcaaatagggactaaaaatgaataaaaaattt 7458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 363165 - 363064
Alignment:
Q  5 tctccaaaaatattgtagtttgtaagaataatctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaactagtccctataaaatgc 104  Q
    |||||||||| ||| || ||| ||| |||||||  |||||||| ||| |||||||||||||  ||| ||||||| ||||||| || ||| ||||||| ||    
T  363165 tctccaaaaa-attataatttttaataataatccttatttttagaactttttacaaaaaatagatatttttagtcctccaaagtaatccttataaaaagc 363067  T
Q  105 aaa 107  Q
    |||    
T  363066 aaa 363064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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