View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8294A_low_21 (Length: 438)

Name: NF8294A_low_21
Description: NF8294A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8294A_low_21
NF8294A_low_21
[»] chr4 (2 HSPs)
chr4 (16-432)||(40821517-40821932)
chr4 (327-432)||(40826201-40826306)
[»] chr7 (9 HSPs)
chr7 (132-432)||(20292021-20292311)
chr7 (312-421)||(20301393-20301502)
chr7 (334-432)||(20064893-20064991)
chr7 (327-432)||(20229247-20229352)
chr7 (327-432)||(20261830-20261935)
chr7 (244-319)||(20092587-20092660)
chr7 (336-432)||(20170431-20170527)
chr7 (336-432)||(20172424-20172520)
chr7 (312-432)||(20296617-20296737)
[»] scaffold0027 (1 HSPs)
scaffold0027 (310-355)||(135558-135603)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 40821932 - 40821517
Alignment:
Q  16 attttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaaatgacggtctaggnnnnnnnnnnnnnnnnnnnnnt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |    
T  40821932 attttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaaatgacggtctagggaaaaaaaagaaaagaaaag-t 40821834  T
Q  116 gataacctaaataagtagtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactctt 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40821833 gataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgtgattttttagactctt 40821734  T
Q  216 gactttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgtt 315  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821733 gactttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgtt 40821634  T
Q  316 caaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccga 415  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  40821633 caaatatgctctctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagtacataaaggacactga 40821534  T
Q  416 aactcttatctccaaag 432  Q
    |||||||||||||||||    
T  40821533 aactcttatctccaaag 40821517  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 432
Target Start/End: Complemental strand, 40826306 - 40826201
Alignment:
Q  327 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 426  Q
    |||||| |||| ||| ||| ||||||||   ||||| |||||||||| |||  || |||||||||||| |||| ||| |||||| | ||||||||  |||    
T  40826306 tctgttttgtttattctgtgttgctattccctacaatttagtattgcaatagacaccatcacatcatctcaattcatcaaggaccctgaaactctactct 40826207  T
Q  427 ccaaag 432  Q
    ||||||    
T  40826206 ccaaag 40826201  T

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Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 132 - 432
Target Start/End: Original strand, 20292021 - 20292311
Alignment:
Q  132 agtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactcttgactttaag---gaaa 228  Q
    ||||||||| |||||| ||| |||| ||||| |||| |||    |||| |||||  |||||||| |||||||||||||||||||||| |||||   ||||    
T  20292021 agtgaaatgtctcaaagaacattaattttttgaaataata----tttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaa 20292116  T
Q  229 tctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgctctc 328  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||      ||||||||||||||    
T  20292117 tctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgggt--ttcagt------tcaaatatgctctc 20292207  T
Q  329 tgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctcc 428  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||| |||||| | |||||||||||||||    
T  20292208 tgttctgttcattttgttttgctatttgttacaagttaatattgccataaacaccatcacatcatcccaattcatcaaggacgctgaaactcttatctcc 20292307  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 20301393 - 20301502
Alignment:
Q  312 tgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggaca 411  Q
    ||||||||| || ||| |||| |||||||| |||||| |||||||||||  |||||||| |  |||  || ||||||||||||||||| ||| ||||||     
T  20301393 tgttcaaatctgttctttgttttgttcattctgttttcctatttgttacgtgttagtatcggtatagacaccatcacatcatcccaattcatcaaggacc 20301492  T
Q  412 ccgaaactct 421  Q
    | ||||||||    
T  20301493 ctgaaactct 20301502  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 432
Target Start/End: Complemental strand, 20064991 - 20064893
Alignment:
Q  334 tgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 432  Q
    |||||||| ||||||  ||||||||||| |||||||| |  |||  || ||||||||||||||||| ||| |||||| | ||||| ||  |||||||||    
T  20064991 tgttcattgtgtttttgtatttgttacatgttagtatcggtatagacaccatcacatcatcccaattcatcaaggaccctgaaacactactctccaaag 20064893  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 20229247 - 20229352
Alignment:
Q  327 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 426  Q
    |||||| | |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||    
T  20229247 tctgttttattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct 20229346  T
Q  427 ccaaag 432  Q
    ||||||    
T  20229347 ccaaag 20229352  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 20261830 - 20261935
Alignment:
Q  327 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 426  Q
    |||||| | |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||    
T  20261830 tctgttgtattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct 20261929  T
Q  427 ccaaag 432  Q
    ||||||    
T  20261930 ccaaag 20261935  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
Q  244 aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa 319  Q
    ||||||||||||||||||||| ||||||||| | | | | ||||||| |||||  |||||||||  ||||||||||    
T  20092660 aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa 20092587  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 432
Target Start/End: Complemental strand, 20170527 - 20170431
Alignment:
Q  336 ttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 432  Q
    |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||||||||    
T  20170527 ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag 20170431  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 432
Target Start/End: Complemental strand, 20172520 - 20172424
Alignment:
Q  336 ttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 432  Q
    |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||||||||    
T  20172520 ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag 20172424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 432
Target Start/End: Original strand, 20296617 - 20296737
Alignment:
Q  312 tgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggaca 411  Q
    ||||||||| || | |||||| | | |||| |||||||| ||||||||||  | ||||||||||||  ||  || ||||| ||||||| ||| ||||||     
T  20296617 tgttcaaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggacc 20296716  T
Q  412 ccgaaactcttatctccaaag 432  Q
    | |||||||| ||||| ||||    
T  20296717 ctgaaactctaatctcaaaag 20296737  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 135603 - 135558
Alignment:
Q  310 gttgttcaaatatgctctctgttctgttcattttgttttgctattt 355  Q
    ||||||||||| || |||||||| |||| |||||||||||||||||    
T  135603 gttgttcaaatgtgttctctgttttgttaattttgttttgctattt 135558  T

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